Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.7e-172 607.4 300 100.0
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 1.7e-123 446.4 294 77.2
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 3.8e-123 445.3 297 77.1
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 1.2e-121 440.3 287 75.6
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 2.3e-120 436.0 292 74.7
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 3.9e-120 435.3 293 75.8
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 8.7e-120 434.1 289 75.8
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 8.7e-120 434.1 292 75.0
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 3.3e-119 432.2 285 76.5
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 5.6e-119 431.4 288 77.1
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 4.8e-118 428.3 289 74.4
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 3.1e-117 425.6 292 73.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 5.3e-117 424.9 281 76.2
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 4.5e-116 421.8 289 73.7
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 7.6e-116 421.0 289 73.4
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 7.6e-116 421.0 290 75.5
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.7e-115 419.9 289 74.7
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 2.9e-115 419.1 289 72.7
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 3.8e-115 418.7 293 73.4
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 4.9e-115 418.3 284 72.9
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.9e-114 416.4 293 72.7
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.9e-114 416.4 293 73.0
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 2.5e-114 416.0 282 74.8
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 2.5e-114 416.0 292 71.9
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 4.2e-114 415.2 294 71.4
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 5.5e-114 414.8 291 72.2
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.6e-113 413.3 289 71.3
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.6e-113 413.3 289 71.3
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.5e-113 412.1 284 73.6
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 6.0e-113 411.4 290 71.0
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 7.9e-113 411.0 291 71.8
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 1.0e-112 410.6 297 73.1
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 1.3e-112 410.2 291 72.5
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 1.3e-112 410.2 288 72.6
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 3.0e-112 409.1 288 72.2
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 3.9e-112 408.7 293 73.7
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 3.9e-112 408.7 296 69.6
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 3.9e-112 408.7 288 72.6
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 5.1e-112 408.3 293 69.6
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 5.1e-112 408.3 291 71.5
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 1.1e-111 407.1 293 69.3
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.5e-111 406.8 288 71.5
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.9e-111 406.4 291 71.1
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 3.3e-111 405.6 287 71.4
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 3.3e-111 405.6 287 72.1
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 1.6e-110 403.3 288 71.5
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 2.1e-110 402.9 289 71.3
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 4.8e-110 401.7 288 70.5
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 6.3e-110 401.4 279 74.9
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.1e-109 400.6 291 69.4
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 1.4e-109 400.2 293 70.0
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 1.4e-109 400.2 292 69.5
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 2.4e-109 399.4 284 69.7
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 3.1e-109 399.1 292 69.2
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 4.1e-109 398.7 277 71.8
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 9.0e-109 397.5 289 68.9
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 1.2e-108 397.1 278 71.6
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 1.2e-108 397.1 291 69.8
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 1.5e-108 396.7 291 69.4
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 3.4e-108 395.6 283 70.3
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 4.5e-108 395.2 284 68.3
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 5.9e-108 394.8 292 67.1
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.0e-107 394.0 292 69.2
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 1.3e-107 393.7 302 69.5
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.2e-107 392.9 294 66.3
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 2.2e-107 392.9 284 68.0
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 5.0e-107 391.7 290 68.3
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 8.4e-107 391.0 283 70.3
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 1.4e-106 390.2 288 69.1
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.9e-106 389.8 283 70.3
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 4.2e-106 388.7 277 68.6
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 4.2e-106 388.7 292 67.8
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 7.2e-106 387.9 282 69.1
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 1.2e-105 387.1 291 67.7
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 1.8e-104 383.3 291 67.0
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.7e-104 381.3 291 67.7
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.9e-103 379.8 287 69.0
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 2.5e-103 379.4 291 66.3
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 4.3e-103 378.6 289 66.1
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 5.7e-103 378.3 289 67.8
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 5.7e-103 378.3 291 66.7
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.3e-102 377.1 287 67.6
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 2.8e-102 375.9 290 66.9
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 2.8e-102 375.9 296 65.9
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 2.8e-102 375.9 296 65.9
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.7e-102 375.6 292 66.1
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 3.7e-102 375.6 289 66.1
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 3.7e-102 375.6 279 68.5
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 6.3e-102 374.8 292 66.1
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 8.2e-102 374.4 292 65.8
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 3.1e-101 372.5 272 70.6
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 4.1e-101 372.1 290 65.9
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 4.1e-101 372.1 295 65.8
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 2.6e-100 369.4 283 65.7
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 4.5e-100 368.6 220 81.8
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 1.7e-99 366.7 301 64.1
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 5.5e-98 361.7 293 64.2
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 7.2e-98 361.3 276 68.5
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 9.4e-98 360.9 287 65.5
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 1.2e-97 360.5 292 64.0
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 1.6e-97 360.1 259 71.0
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 1.6e-97 360.1 297 65.0
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 7.9e-97 357.8 259 70.3
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 3.0e-96 355.9 278 66.5
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 2.8e-94 349.4 291 60.8
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 5.3e-93 345.1 244 69.3
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 2.0e-92 343.2 293 62.5
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 4.5e-92 342.0 282 62.4
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 5.9e-92 341.7 300 61.0
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 2.9e-91 339.3 282 61.3
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 4.2e-90 335.5 281 62.3
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 9.4e-90 334.3 268 66.0
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 5.1e-88 328.6 294 60.5
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 1.1e-87 327.4 229 71.2
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 7.4e-87 324.7 230 73.5
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 3.5e-84 315.8 198 75.3
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 8.5e-83 311.2 186 79.6
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 7.2e-82 308.1 228 71.5
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 2.1e-81 306.6 293 59.0
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 1.8e-80 303.5 293 56.7
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 3.8e-75 285.8 311 49.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 8.5e-75 284.6 289 56.4
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 3.4e-71 272.7 229 61.6
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 2.8e-70 269.6 289 52.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.4e-69 267.3 257 56.0
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.9e-67 259.6 198 69.2
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 3.2e-66 256.1 217 61.8
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 3.2e-66 256.1 224 62.5
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.1e-65 251.9 218 61.5
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 6.1e-65 251.9 218 61.5
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.0e-64 251.1 245 52.2
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.4e-64 250.8 206 63.6
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 1.2e-60 237.7 197 65.5
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 4.5e-60 235.7 223 58.7
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 2.9e-59 233.0 201 57.7
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 1.1e-58 231.1 138 73.9
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 2.5e-58 229.9 139 78.4
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 1.6e-57 227.3 235 54.9
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 4.0e-56 222.6 222 55.9
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 6.8e-56 221.9 193 63.7
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 7.8e-52 208.4 138 74.6
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 1.9e-50 203.8 126 77.0
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 5.8e-47 192.2 193 49.7
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 5.4e-45 185.7 239 45.2
CBR_g26342 Chara braunii HOM05D003601 ORTHO05D004896 4.1e-37 159.5 325 36.3
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.7e-35 154.1 187 51.3
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 1.6e-33 147.5 178 49.4
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 1.6e-33 147.5 178 49.4
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 2.8e-33 146.7 275 40.0
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 3.6e-33 146.4 178 49.4
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 2.9e-30 136.7 115 53.0
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 3.8e-30 136.3 223 35.9
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 9.2e-29 131.7 85 72.9
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 7.8e-28 128.6 120 60.8
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.1e-27 125.9 174 48.3
Sc08g0001920 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.3e-26 123.2 78 73.1
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 4.3e-26 122.9 80 71.2
CDE08G1615 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 5.6e-26 122.5 81 69.1
EL10Ac9g21063 Beta vulgaris HOM05D003601 ORTHO05D004896 1.6e-25 120.9 108 63.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.4e-23 113.2 105 57.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.3e-22 111.3 190 37.9
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.7e-20 103.6 205 34.1
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 5.1e-19 99.4 65 69.2
Actinidia20220 Actinidia chinensis HOM05D003601 ORTHO05D004896 4.3e-18 96.3 86 58.1
CBR_g49218 Chara braunii HOM05D003601 ORTHO05D004896 1.4e-16 91.3 177 39.0
Sc23g0002180 Simmondsia chinensis HOM05D003601 ORTHO05D004896 6.4e-14 82.4 91 56.0
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 9.3e-13 78.6 89 55.1
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 2.1e-12 77.4 100 50.0
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 6.0e-12 75.9 66 62.1
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 6.7e-11 72.4 269 26.4
Carub.0006s3606 Capsella rubella HOM05D003601 ORTHO05D015895 1.3e-09 68.2 77 44.2
AT4G01023 Arabidopsis thaliana HOM05D003601 ORTHO05D015895 4.8e-09 66.2 62 50.0
Thhalv10029283m.g Eutrema salsugineum HOM05D003601 ORTHO05D015895 1.4e-08 64.7 35 65.7
AL6G52380 Arabidopsis lyrata HOM05D003601 ORTHO05D015895 3.1e-08 63.5 72 38.9
C01p04070 Brassica napus HOM05D003601 ORTHO05D013806 1.7e-06 57.8 71 47.9
Sp6g01130 Schrenkiella parvula HOM05D003601 ORTHO05D015895 1.7e-06 57.8 37 56.8
A02p43170 Brassica napus HOM05D003601 ORTHO05D013806 2.2e-06 57.4 89 39.3
C02p38360 Brassica napus HOM05D003601 ORTHO05D015895 3.8e-06 56.6 57 42.1
Sabra17G0123400 Salix brachista HOM05D000390 ORTHO05D001192 3.8e-06 56.6 44 63.6
FvH4_5g30073 Fragaria vesca HOM05D003601 ORTHO05D004896 8.4e-06 55.5 72 38.9


User provided reference genes

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