Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 0.0e+00 1091.6 529 100.0
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.1e-237 825.1 485 83.3
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.6e-230 802.7 482 81.5
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 3.1e-229 798.5 477 80.3
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.2e-225 786.6 479 81.0
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.1e-225 785.8 477 80.3
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 3.5e-225 785.0 477 79.9
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 1.1e-221 773.5 480 78.8
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 4.1e-221 771.5 480 79.4
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 2.6e-220 768.8 478 79.3
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.6e-220 768.8 494 76.9
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 4.2e-218 761.5 477 77.4
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 5.5e-218 761.1 477 78.2
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 3.6e-217 758.4 480 77.9
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.3e-216 755.7 480 77.1
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 6.7e-216 754.2 480 76.9
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 8.7e-216 753.8 479 77.2
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 5.7e-215 751.1 477 77.4
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 4.8e-214 748.0 478 78.0
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 4.8e-214 748.0 478 77.2
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 8.2e-214 747.3 479 77.0
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.1e-213 746.9 479 76.4
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.4e-213 746.5 478 77.8
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.4e-213 745.7 478 77.8
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 5.3e-213 744.6 480 76.5
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 5.3e-213 744.6 477 76.9
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.2e-212 743.4 478 75.7
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.6e-212 742.3 478 77.4
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 2.6e-212 742.3 478 77.2
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 3.4e-212 741.9 478 76.4
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 4.5e-212 741.5 477 76.9
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-211 739.6 478 77.4
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 6.5e-211 737.6 478 76.6
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.9e-210 736.1 478 75.1
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 3.2e-210 735.3 478 76.2
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 5.5e-210 734.6 486 75.9
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.7e-209 732.3 486 75.9
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 2.7e-209 732.3 486 75.3
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.7e-209 732.3 480 75.0
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 3.6e-209 731.9 480 76.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 7.9e-209 730.7 481 75.7
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 1.0e-208 730.3 477 75.1
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 1.0e-208 730.3 478 76.6
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 1.8e-208 729.6 477 75.5
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 5.1e-208 728.0 477 75.3
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 5.1e-208 728.0 492 74.4
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 6.7e-208 727.6 486 75.1
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 6.7e-208 727.6 479 75.6
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.1e-207 726.9 475 75.4
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 1.5e-207 726.5 478 74.5
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 2.0e-207 726.1 478 75.5
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 2.0e-207 726.1 479 75.6
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 4.4e-207 724.9 475 75.2
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 3.7e-206 721.8 508 72.0
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.3e-206 721.1 478 75.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.4e-205 719.9 478 76.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.4e-205 719.2 478 73.6
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 2.4e-205 719.2 475 74.9
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 2.6e-204 715.7 478 73.2
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 1.7e-203 713.0 481 73.6
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 2.2e-203 712.6 477 73.6
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.4e-202 709.9 482 73.4
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.2e-201 706.8 482 73.7
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 1.6e-201 706.4 507 69.8
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.7e-201 705.7 513 70.2
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 7.9e-201 704.1 478 73.2
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 1.5e-199 699.9 477 72.7
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 4.4e-199 698.4 477 72.1
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 5.7e-199 698.0 478 72.2
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.7e-198 696.4 477 71.9
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 4.8e-198 694.9 506 68.6
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 6.3e-198 694.5 477 74.6
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 6.3e-198 694.5 559 65.7
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 5.3e-197 691.4 434 78.3
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 5.9e-196 688.0 516 68.8
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 5.0e-195 684.9 479 71.4
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 5.0e-195 684.9 482 72.4
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.2e-194 682.2 478 72.6
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 2.7e-193 679.1 483 70.8
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 4.7e-193 678.3 432 78.2
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 6.7e-192 674.5 475 70.9
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 6.7e-192 674.5 436 76.6
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 3.8e-187 658.7 477 70.0
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 3.8e-187 658.7 477 70.0
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 6.5e-187 657.9 478 69.9
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 3.2e-186 655.6 433 76.7
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 2.1e-185 652.9 498 68.1
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 6.1e-185 651.4 497 67.2
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 4.5e-180 635.2 485 66.4
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 1.5e-178 630.2 477 67.5
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 8.9e-176 620.9 421 74.8
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 2.6e-175 619.4 494 64.4
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.3e-174 617.1 489 64.8
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 2.2e-174 616.3 441 70.7
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.7e-174 615.5 441 70.7
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 3.1e-173 612.5 477 66.9
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.7e-171 606.7 476 64.1
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 2.5e-170 602.8 438 69.9
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 2.5e-170 602.8 508 59.6
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.3e-168 596.3 492 62.0
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.2e-165 585.9 472 63.1
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 3.6e-161 572.4 480 62.1
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 4.7e-161 572.0 497 60.6
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 1.4e-160 570.5 364 77.5
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.4e-160 570.5 472 62.5
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 6.8e-160 568.2 363 77.4
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 2.0e-156 556.6 394 72.3
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 3.0e-155 552.7 475 61.1
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 9.5e-154 547.7 365 75.1
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 8.1e-153 544.7 501 56.9
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.5e-151 540.4 392 68.9
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.3e-150 537.3 446 62.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 2.1e-148 530.0 517 54.2
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.6e-148 528.9 505 54.7
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 2.1e-145 520.0 303 82.5
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 6.4e-142 508.4 368 71.2
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.4e-141 506.5 471 56.7
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 4.3e-138 495.7 483 53.8
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 5.8e-135 485.3 507 50.7
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.5e-130 470.7 420 60.2
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 2.4e-125 453.4 256 83.2
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 7.1e-125 451.8 366 66.4
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 4.6e-124 449.1 344 69.5
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.1e-112 411.4 399 51.4
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.3e-107 393.7 480 49.2
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 1.0e-99 368.2 374 57.2
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.9e-99 366.3 334 60.2
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 5.1e-91 339.3 289 61.6
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.3e-86 324.7 325 56.0
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.3e-83 313.9 238 68.1
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.3e-70 271.6 214 63.1
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 3.8e-70 270.0 395 39.2
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 9.8e-66 255.4 179 67.0
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-62 244.6 125 88.8
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 1.0e-59 235.3 306 41.5
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 2.9e-54 217.2 214 58.9
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 5.0e-54 216.5 335 40.3
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 1.4e-51 208.4 108 87.0
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.0e-50 204.5 108 84.3
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.4e-48 198.4 108 83.3
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.5e-39 167.2 195 50.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.2e-36 156.4 94 75.5
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 1.9e-32 144.8 132 56.8
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.1e-30 136.7 90 68.9
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 8.9e-27 125.9 351 27.6
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 6.4e-25 119.8 68 77.9
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.4e-24 117.9 124 56.5
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.8e-17 94.0 431 25.3
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 7.1e-16 89.7 61 75.4
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 3.3e-13 80.9 82 50.0
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 7.3e-13 79.7 72 58.3
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 6.9e-11 73.2 45 73.3
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 4.9e-09 67.0 38 76.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.4e-08 65.5 41 65.9
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 3.5e-07 60.8 45 62.2
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 4.6e-07 60.5 33 78.8
MBI14_g24972_MAGBIO Magnolia biondii HOM05D004081 ORTHO05D004935 3.9e-06 57.4 58 55.2


User provided reference genes

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