Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0003940 Simmondsia chinensis HOM05D007098 ORTHO05D008793 3.3e-203 712.6 782 100.0
Ah.08g218330 Amaranthus hybridus HOM05D007098 ORTHO05D008793 7.6e-107 392.5 670 74.0
AUR62001258 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.9e-103 380.2 672 75.0
EL10Ac7g18049 Beta vulgaris HOM05D007098 ORTHO05D008793 4.3e-102 376.7 671 73.0
AUR62025750 Chenopodium quinoa HOM05D007098 ORTHO05D008793 3.6e-101 373.6 671 73.9
FvH4_5g07010 Fragaria vesca HOM05D007098 ORTHO05D008793 2.2e-98 364.4 668 73.4
FAN13G2898 Fragaria x ananassa HOM05D007098 ORTHO05D008793 4.2e-97 360.1 668 72.6
FAN18G2243 Fragaria x ananassa HOM05D007098 ORTHO05D008793 2.7e-96 357.5 668 72.8
MD06G1160200 Malus domestica HOM05D007098 ORTHO05D008793 4.6e-96 356.7 669 70.9
Haze_07291 Corylus avellana HOM05D007098 ORTHO05D008793 5.1e-95 353.2 682 69.6
QL10p005624 Quercus lobata HOM05D007098 ORTHO05D008793 4.3e-94 350.1 676 70.7
GSVIVG01007576001 Vitis vinifera HOM05D007098 ORTHO05D008793 7.3e-94 349.4 671 73.5
RcHm_v2.0_Chr7g0191671 Rosa chinensis HOM05D007098 ORTHO05D008793 1.3e-93 348.6 668 71.9
Prupe.5G160200 Prunus persica HOM05D007098 ORTHO05D008793 1.6e-93 348.2 664 73.5
Cpa.g.sc4.42 Carica papaya HOM05D007098 ORTHO05D008793 4.8e-93 346.7 665 69.9
CiPaw.11G013600 Carya illinoinensis HOM05D007098 ORTHO05D008793 1.8e-92 344.7 677 69.6
FAN04G0983 Fragaria x ananassa HOM05D007098 ORTHO05D008793 1.8e-92 344.7 665 62.9
Hma1.2p1_0014F.1_g009950 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.8e-92 344.7 672 69.9
Duzib205G2031 Durio zibethinus HOM05D007098 ORTHO05D008793 4.0e-92 343.6 679 72.5
Dinv11119 Davidia involucrata HOM05D002040 ORTHO05D002502 1.9e-89 334.7 674 66.8
TWI39G0887 Tripterygium wilfordii HOM05D007098 ORTHO05D008793 3.2e-89 334.0 676 68.9
Thecc.03G120500 Theobroma cacao HOM05D007098 ORTHO05D008793 2.1e-88 331.3 686 68.8
ClCG03G003340 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.7e-88 330.9 672 68.3
CANSAT80G2237 Cannabis sativa HOM05D007098 ORTHO05D008793 1.8e-87 328.2 325 53.2
MSTRG.9703 Avicennia marina HOM05D007098 ORTHO05D008793 3.0e-87 327.4 672 69.2
TAR371G0113 Trochodendron aralioides HOM05D007098 ORTHO05D008793 1.1e-86 325.5 679 70.3
Atru.chr9.986 Acer truncatum HOM05D007098 ORTHO05D008793 3.3e-86 323.9 678 67.7
CSS0030055 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 2.8e-85 320.9 464 65.1
Cfa018906 Carpinus fangiana HOM05D007098 ORTHO05D008793 1.8e-84 318.2 535 80.7
Gorai.001G062100 Gossypium raimondii HOM05D007098 ORTHO05D008793 4.0e-84 317.0 686 66.8
Ciclev10019054m.g Citrus clementina HOM05D007098 ORTHO05D008793 5.3e-84 316.6 677 67.2
Manes.06G113500 Manihot esculenta HOM05D007098 ORTHO05D008793 1.2e-83 315.5 671 63.9
CsaV3_1G009150 Cucumis sativus L. HOM05D007098 ORTHO05D008793 1.5e-83 315.1 672 63.8
Gohir.D07G058600 Gossypium hirsutum HOM05D007098 ORTHO05D008793 2.6e-83 314.3 686 66.6
Gohir.A07G054300 Gossypium hirsutum HOM05D007098 ORTHO05D008793 4.5e-83 313.5 683 66.5
Nn5g28372 Nelumbo nucifera HOM05D007098 ORTHO05D008793 4.9e-82 310.1 673 67.3
MBI11_g46348_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 1.1e-81 308.9 681 67.8
Dinv38489 Davidia involucrata HOM05D007098 ORTHO05D008793 1.4e-81 308.5 461 64.9
Sed0010608 Sechium edule HOM05D007098 ORTHO05D008793 1.9e-81 308.1 673 66.9
Hund21512 Selenicereus undatus HOM05D007098 ORTHO05D008793 1.9e-81 308.1 666 71.9
Sabra12G0066500 Salix brachista HOM05D007098 ORTHO05D008793 2.5e-81 307.8 678 66.8
Cc04_g10690 Coffea canephora HOM05D007098 ORTHO05D008793 3.2e-81 307.4 681 66.7
Lalb_Chr10g0098821 Lupinus albus HOM05D007098 ORTHO05D008793 1.2e-80 305.4 677 66.0
Peaxi162Scf00089g00927 Petunia axillaris HOM05D007098 ORTHO05D008793 2.7e-80 304.3 682 69.8
Phvul.011G039200 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 4.6e-80 303.5 464 63.4
PGSC0003DMG400015232 Solanum tuberosum HOM05D007098 ORTHO05D008793 1.3e-79 302.0 674 67.4
Actinidia16202 Actinidia chinensis HOM05D007098 ORTHO05D008793 8.7e-79 299.3 622 69.3
THA.LOC104824999 Tarenaya hassleriana HOM05D007098 ORTHO05D008793 8.7e-79 299.3 677 64.4
Lj2g0008135 Lotus japonicus HOM05D007098 ORTHO05D008793 1.5e-78 298.5 673 66.9
Potri.012G091800 Populus trichocarpa HOM05D007098 ORTHO05D008793 1.9e-78 298.1 675 66.7
arahy.Tifrunner.gnm1.ann1.RHK9HC Arachis hypogaea HOM05D007098 ORTHO05D008793 2.5e-78 297.7 680 65.9
Rhsim08G0182900 Rhododendron simsii HOM05D007098 ORTHO05D008793 4.3e-78 297.0 534 79.0
vmacro19257 Vaccinium macrocarpon HOM05D007098 ORTHO05D008793 5.7e-78 296.6 535 78.1
arahy.Tifrunner.gnm1.ann1.PW5CDL Arachis hypogaea HOM05D007098 ORTHO05D008793 9.6e-78 295.8 680 65.9
Glyma.12G037500 Glycine max HOM05D007098 ORTHO05D008793 1.3e-77 295.4 674 66.3
CSS0038177 Camellia sinensis var. sinensis HOM05D007098 ORTHO05D008793 6.2e-77 293.1 464 63.1
Migut.D02039 Erythranthe guttata HOM05D007098 ORTHO05D008793 1.4e-76 292.0 683 67.3
MELO3C002322.2 Cucumis melo HOM05D007098 ORTHO05D008793 6.9e-76 289.7 672 64.4
SalBow1G0423 Salvia bowleyana HOM05D007098 ORTHO05D008793 1.5e-75 288.5 670 63.3
Carub.0008s1032 Capsella rubella HOM05D007098 ORTHO05D008793 5.8e-75 286.6 678 65.5
Aa31LG3G5960 Aethionema arabicum HOM05D007098 ORTHO05D008793 1.0e-74 285.8 677 65.7
Nitab4.5_0006717g0020 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.7e-74 285.0 678 69.8
Glyma.11G111200 Glycine max HOM05D007098 ORTHO05D008793 3.8e-74 283.9 674 65.3
VMungo1127G2011 Vigna mungo HOM05D007098 ORTHO05D008793 3.8e-74 283.9 458 61.6
Nitab4.5_0001360g0150 Nicotiana tabacum HOM05D007098 ORTHO05D008793 1.9e-73 281.6 678 68.9
CARHR258300 Cardamine hirsuta HOM05D007098 ORTHO05D008793 7.1e-73 279.6 677 64.8
Psat2g130240 Pisum sativum HOM05D007098 ORTHO05D008793 7.1e-73 279.6 328 47.9
AL8G24320 Arabidopsis lyrata HOM05D007098 ORTHO05D008793 6.1e-72 276.6 679 64.4
Sopen03g030770 Solanum pennellii HOM05D007098 ORTHO05D008793 1.3e-71 275.4 674 68.8
HanXRQChr09g0272771 Helianthus annuus HOM05D007098 ORTHO05D008793 5.1e-71 273.5 678 62.4
AT5G50280 Arabidopsis thaliana HOM05D007098 ORTHO05D008793 6.7e-71 273.1 679 64.5
arahy.Tifrunner.gnm1.ann1.L7HRZC Arachis hypogaea HOM05D007098 ORTHO05D008793 8.7e-71 272.7 337 45.4
Thhalv10012796m.g Eutrema salsugineum HOM05D007098 ORTHO05D008793 1.9e-70 271.6 672 64.7
Sp6g12370 Schrenkiella parvula HOM05D007098 ORTHO05D008793 2.5e-70 271.2 677 64.0
SGA_v2.0_scaffold45G17096 Striga asiatica HOM05D006560 ORTHO05D008164 1.3e-69 268.9 679 59.5
Eucgr.B00165 Eucalyptus grandis HOM05D007098 ORTHO05D008793 6.3e-69 266.5 507 80.7
PSO782G3618 Papaver somniferum HOM05D007098 ORTHO05D008793 6.3e-69 266.5 672 65.5
CDE09G0597 Ceratophyllum demersum HOM05D007098 ORTHO05D008793 1.4e-68 265.4 676 68.0
Glyma.02G116500 Glycine max HOM05D007098 ORTHO05D008793 1.4e-68 265.4 326 44.5
PSO063G4104 Papaver somniferum HOM05D007098 ORTHO05D008793 5.3e-68 263.5 672 65.2
VMungo1215G0824 Vigna mungo HOM05D007098 ORTHO05D008793 6.9e-68 263.1 328 44.5
TPR.G24468 Trifolium pratense HOM05D007098 ORTHO05D008793 5.9e-67 260.0 668 64.7
Lsat_1_v5_gn_4_78280 Lactuca sativa HOM05D007098 ORTHO05D008793 7.7e-67 259.6 340 44.4
A03p27750 Brassica napus HOM05D007098 ORTHO05D008793 1.3e-66 258.8 671 59.5
BraA03t11986Z Brassica rapa HOM05D007098 ORTHO05D008793 1.3e-66 258.8 671 59.3
ECA232G2468 Erigeron canadensis HOM05D001195 ORTHO05D001138 1.7e-66 258.5 462 51.5
BolC3t15668H Brassica oleracea HOM05D007098 ORTHO05D008793 2.2e-66 258.1 671 59.6
Lj5A101T108 Lonicera japonica HOM05D007098 ORTHO05D008793 3.8e-66 257.3 180 67.2
Phvul.003G042600 Phaseolus vulgaris HOM05D007098 ORTHO05D008793 3.8e-66 257.3 327 44.6
C03p33470 Brassica napus HOM05D007098 ORTHO05D008793 6.5e-66 256.5 670 59.9
Medtr5g045490 Medicago truncatula HOM05D007098 ORTHO05D008793 6.5e-66 256.5 460 58.7
BcaB01g02904 Brassica carinata HOM05D007098 ORTHO05D008793 1.1e-65 255.8 670 59.6
Solyc03g111650.4 Solanum lycopersicum HOM05D007098 ORTHO05D008793 1.4e-65 255.4 674 53.4
BcaC01g04822 Brassica carinata HOM05D007098 ORTHO05D008793 2.5e-65 254.6 681 58.4
CAN.G472.49 Capsicum annuum HOM05D007098 ORTHO05D008793 1.2e-59 235.7 489 86.3
Ca_04973_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 1.2e-59 235.7 450 59.1
ATR0824G168 Amborella trichopoda HOM05D007098 ORTHO05D008793 3.8e-58 230.7 331 39.9
HPP92_024236 Vanilla planifolia HOM05D007098 ORTHO05D008793 1.5e-49 202.2 159 59.1
Glyma.01G059100 Glycine max HOM05D007098 ORTHO05D008793 2.7e-48 198.0 156 61.5
SEGI_05165 Sequoiadendron giganteum HOM05D007098 ORTHO05D008793 6.1e-48 196.8 310 63.9
Os05g0294600 Oryza sativa ssp. japonica HOM05D007098 ORTHO05D008793 7.2e-41 173.3 180 47.2
Ca_26530_v3 Cicer arietinum L. HOM05D005706 ORTHO05D008793 5.7e-38 163.7 238 85.3
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 5.6e-25 120.6 97 59.8
Mapoly0023s0082 Marchantia polymorpha HOM05D007098 ORTHO05D008793 1.2e-24 119.4 175 34.9
AagrBONN_evm.TU.Sc2ySwM_228.5130 Anthoceros agrestis HOM05D007098 ORTHO05D008793 5.4e-20 104.0 168 31.5
Hma1.2p1_0014F.1_g009960 Hydrangea macrophylla HOM05D007098 ORTHO05D008793 1.5e-14 85.9 57 75.4
Lj5C101T15 Lonicera japonica HOM05D007098 ORTHO05D008793 2.0e-14 85.5 56 75.0
Duzib084G0201 Durio zibethinus HOM05D007098 ORTHO05D008793 3.4e-14 84.7 65 64.6
DCAR_021600 Daucus carota HOM05D007098 ORTHO05D008793 1.3e-13 82.8 57 71.9
Zm00001eb154110 Zea mays HOM05D007098 ORTHO05D008793 8.3e-13 80.1 85 47.1
MBI11_g46065_MAGBIO Magnolia biondii HOM05D007098 ORTHO05D008793 6.0e-11 73.9 53 71.7
ClCG03G003360 Citrullus lanatus HOM05D007098 ORTHO05D008793 2.3e-10 72.0 48 66.7
Ca_30971_v3 Cicer arietinum L. HOM05D007098 ORTHO05D008793 3.0e-10 71.6 232 29.7
arahy.Tifrunner.gnm1.ann1.0Z4KK5 Arachis hypogaea HOM05D007098 ORTHO05D008793 5.0e-10 70.9 61 62.3
Hma1.2p1_1303F.1_g274420 Hydrangea macrophylla HOM05D003056 ORTHO05D003422 8.1e-08 63.5 165 24.2
EL10Ac8g18299 Beta vulgaris HOM05D003056 ORTHO05D003422 1.4e-07 62.8 142 26.8
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 8.9e-07 60.1 123 27.6
Aa31LG8G16030 Aethionema arabicum HOM05D003056 ORTHO05D003422 4.4e-06 57.8 139 23.7
CDE07G1469 Ceratophyllum demersum HOM05D003056 ORTHO05D003422 4.4e-06 57.8 169 23.1
Ca_01194_v3 Cicer arietinum L. HOM05D006218 ORTHO05D007338 5.8e-06 57.4 119 30.3
Ah.09g230000 Amaranthus hybridus HOM05D003056 ORTHO05D003422 7.5e-06 57.0 116 26.7
PGR004G0301 Punica granatum HOM05D000001 ORTHO05D000003 7.5e-06 57.0 135 27.4
TAR628G1322 Trochodendron aralioides HOM05D000001 ORTHO05D011242 7.5e-06 57.0 103 33.0


User provided reference genes

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