Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0001370 Simmondsia chinensis HOM05D004380 ORTHO05D005134 4.6e-171 605.1 487 100.0
Ah.09g224390 Amaranthus hybridus HOM05D004380 ORTHO05D005134 4.3e-68 263.1 479 53.9
Manes.15G172200 Manihot esculenta HOM05D004380 ORTHO05D005134 3.7e-67 260.0 520 50.0
Haze_08305 Corylus avellana HOM05D004380 ORTHO05D005134 1.8e-61 241.1 511 52.3
AUR62007222 Chenopodium quinoa HOM05D004380 ORTHO05D005134 6.7e-61 239.2 510 52.9
QL03p017813 Quercus lobata HOM05D004380 ORTHO05D005134 5.6e-60 236.1 514 45.9
GSVIVG01013206001 Vitis vinifera HOM05D004380 ORTHO05D005134 2.1e-59 234.2 487 44.6
Cc01_g02120 Coffea canephora HOM05D004380 ORTHO05D005134 8.2e-59 232.3 487 56.1
Cfa012380 Carpinus fangiana HOM05D004380 ORTHO05D005134 1.1e-58 231.9 500 43.8
Gorai.007G293700 Gossypium raimondii HOM05D004380 ORTHO05D005134 1.1e-58 231.9 497 55.1
CiPaw.11G087400 Carya illinoinensis HOM05D004380 ORTHO05D005134 5.3e-58 229.6 486 44.0
Cpa.g.sc69.34 Carica papaya HOM05D004380 ORTHO05D005134 1.5e-57 228.0 496 37.1
Haze_08308 Corylus avellana HOM05D004380 ORTHO05D005134 2.6e-57 227.3 500 53.0
Actinidia10879 Actinidia chinensis HOM05D004380 ORTHO05D005134 3.4e-57 226.9 504 54.4
Potri.003G087200 Populus trichocarpa HOM05D004380 ORTHO05D005134 3.4e-57 226.9 502 50.2
Thecc.05G299600 Theobroma cacao HOM05D004380 ORTHO05D005134 3.4e-57 226.9 481 56.8
vmacro14143 Vaccinium macrocarpon HOM05D004380 ORTHO05D005134 2.9e-56 223.8 494 47.0
TWI81G0890 Tripterygium wilfordii HOM05D004380 ORTHO05D005134 6.5e-56 222.6 529 39.7
ClCG03G011240 Citrullus lanatus HOM05D004380 ORTHO05D005134 2.5e-55 220.7 503 39.2
Peaxi162Scf01164g00006 Petunia axillaris HOM05D004380 ORTHO05D005134 1.2e-54 218.4 503 57.1
Lalb_Chr04g0258181 Lupinus albus HOM05D004380 ORTHO05D005134 2.1e-54 217.6 501 43.3
PGSC0003DMG400022576 Solanum tuberosum HOM05D004380 ORTHO05D005134 3.5e-54 216.9 503 56.9
CAN.G1336.5 Capsicum annuum HOM05D004380 ORTHO05D005134 1.8e-53 214.5 503 49.9
EL10Ac4g09041 Beta vulgaris HOM05D004380 ORTHO05D005134 3.0e-53 213.8 480 54.6
Sed0018208 Sechium edule HOM05D004380 ORTHO05D005134 3.0e-53 213.8 503 39.2
Gohir.D11G272400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.9e-53 213.4 497 54.1
Aa31LG9G15640 Aethionema arabicum HOM05D004380 ORTHO05D005134 8.7e-53 212.2 488 41.6
Rhsim07G0121900 Rhododendron simsii HOM05D004380 ORTHO05D005134 1.1e-52 211.8 494 46.2
Nitab4.5_0005084g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 1.9e-52 211.1 488 54.9
Migut.J01084 Erythranthe guttata HOM05D004380 ORTHO05D005134 2.5e-52 210.7 490 39.8
Gohir.A11G262400 Gossypium hirsutum HOM05D004380 ORTHO05D005134 3.3e-52 210.3 497 53.3
THA.LOC104814403 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 7.4e-52 209.1 490 43.5
Duzib128G0331 Durio zibethinus HOM05D004380 ORTHO05D005134 3.7e-51 206.8 491 46.2
Sabra03G0056900 Salix brachista HOM05D004380 ORTHO05D005134 4.8e-51 206.5 497 48.5
Nn6g33684 Nelumbo nucifera HOM05D004380 ORTHO05D005134 8.2e-51 205.7 548 56.2
AUR62018778 Chenopodium quinoa HOM05D004380 ORTHO05D005134 1.1e-50 205.3 449 53.0
CsaV3_2G035720 Cucumis sativus L. HOM05D004380 ORTHO05D005134 2.0e-49 201.1 514 38.9
HanXRQChr16g0500491 Helianthus annuus HOM05D004380 ORTHO05D005134 2.0e-49 201.1 492 45.3
Medtr8g030840 Medicago truncatula HOM05D004380 ORTHO05D005134 3.4e-49 200.3 490 42.9
MELO3C024775.2 Cucumis melo HOM05D004380 ORTHO05D005134 5.9e-49 199.5 511 40.9
Solyc03g033950.4 Solanum lycopersicum HOM05D004380 ORTHO05D005134 1.3e-48 198.4 464 57.3
SGA_v2.0_scaffold86G26890 Striga asiatica HOM05D004380 ORTHO05D005134 1.3e-48 198.4 490 35.9
Lsat_1_v5_gn_6_63641 Lactuca sativa HOM05D004380 ORTHO05D005134 2.2e-48 197.6 486 40.9
DCAR_015696 Daucus carota HOM05D004380 ORTHO05D005134 2.9e-48 197.2 530 37.2
AT1G31870 Arabidopsis thaliana HOM05D004380 ORTHO05D005134 7.2e-47 192.6 485 44.9
SGA_v2.0_scaffold20G09254 Striga asiatica HOM05D003893 ORTHO05D005167 1.2e-46 191.8 456 35.5
Carub.0001s3020 Capsella rubella HOM05D004380 ORTHO05D005134 3.6e-46 190.3 501 50.9
ECA233G1538 Erigeron canadensis HOM05D004380 ORTHO05D005134 1.0e-45 188.7 486 47.3
A05p25450 Brassica napus HOM05D004380 ORTHO05D005134 9.7e-44 182.2 493 51.9
arahy.Tifrunner.gnm1.ann1.522STQ Arachis hypogaea HOM05D004380 ORTHO05D005134 1.3e-43 181.8 511 36.4
Hma1.2p1_0311F.1_g121260 Hydrangea macrophylla HOM05D004380 ORTHO05D005134 1.7e-43 181.4 487 49.7
BcaB03g13784 Brassica carinata HOM05D004380 ORTHO05D005134 2.2e-43 181.0 488 52.3
C05p39530 Brassica napus HOM05D004380 ORTHO05D005134 2.8e-43 180.6 494 51.2
Atru.chr1.3775 Acer truncatum HOM05D004380 ORTHO05D005134 4.8e-43 179.9 437 48.1
BcaC05g27949 Brassica carinata HOM05D004380 ORTHO05D005134 4.8e-43 179.9 494 51.2
CDE02G1296 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 6.3e-43 179.5 506 37.9
Thhalv10007193m.g Eutrema salsugineum HOM05D004380 ORTHO05D005134 6.3e-43 179.5 489 49.3
BraA05t21429Z Brassica rapa HOM05D004380 ORTHO05D005134 8.2e-43 179.1 493 50.5
AL1G45970 Arabidopsis lyrata HOM05D004380 ORTHO05D005134 1.1e-42 178.7 492 49.0
BolC5t32694H Brassica oleracea HOM05D004380 ORTHO05D005134 1.1e-42 178.7 495 50.3
Glyma.07G070900 Glycine max HOM05D004380 ORTHO05D005134 3.1e-42 177.2 493 39.4
Ciclev10033653m.g Citrus clementina HOM05D004380 ORTHO05D005134 5.3e-42 176.4 490 51.6
CARHR031210 Cardamine hirsuta HOM05D004380 ORTHO05D005134 5.9e-41 172.9 490 46.9
Lj3g0000626 Lotus japonicus HOM05D004380 ORTHO05D005134 5.9e-41 172.9 509 47.9
Phvul.010G098800 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.3e-40 171.8 478 47.5
MD16G1006500 Malus domestica HOM05D004380 ORTHO05D005134 2.2e-40 171.0 484 43.4
PSO832G0693 Papaver somniferum HOM05D004380 ORTHO05D005134 2.9e-40 170.6 486 52.1
Dinv25182 Davidia involucrata HOM05D004380 ORTHO05D005134 5.0e-40 169.9 449 43.9
Oeu037610.2 Olea europaea HOM05D004380 ORTHO05D005134 8.5e-40 169.1 481 42.8
HanXRQChr12g0372541 Helianthus annuus HOM05D004380 ORTHO05D005134 7.2e-39 166.0 492 41.5
PSO782G4920 Papaver somniferum HOM05D004380 ORTHO05D005134 7.2e-39 166.0 495 47.1
Nitab4.5_0008421g0010 Nicotiana tabacum HOM05D004380 ORTHO05D005134 9.4e-39 165.6 446 52.0
Haze_13061 Corylus avellana HOM05D000001 ORTHO05D010365 1.2e-38 165.2 150 69.3
Prupe.8G202500 Prunus persica HOM05D004380 ORTHO05D005134 1.6e-38 164.9 493 34.3
arahy.Tifrunner.gnm1.ann1.MX4EXC Arachis hypogaea HOM05D004380 ORTHO05D005134 2.7e-38 164.1 467 33.0
Sopen03g006700 Solanum pennellii HOM05D004380 ORTHO05D005134 3.6e-38 163.7 435 56.8
CANSAT21G1629 Cannabis sativa HOM05D004380 ORTHO05D005134 1.4e-37 161.8 484 46.9
unitig_21.g20505 Utricularia gibba HOM05D004380 ORTHO05D005134 1.4e-37 161.8 509 38.1
Psat4g154840 Pisum sativum HOM05D004380 ORTHO05D005134 1.8e-37 161.4 455 40.4
RcHm_v2.0_Chr4g0446311 Rosa chinensis HOM05D004380 ORTHO05D005134 3.9e-37 160.2 480 49.6
Oeu045705.2 Olea europaea HOM05D004380 ORTHO05D005134 6.7e-37 159.5 499 41.1
Hund11272 Selenicereus undatus HOM05D004380 ORTHO05D005134 1.1e-36 158.7 149 67.8
PSO063G6462 Papaver somniferum HOM05D004380 ORTHO05D005134 2.0e-36 157.9 486 50.2
FAN07G2732 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.3e-36 157.1 483 50.5
Ca_23634_v3 Cicer arietinum L. HOM05D000346 ORTHO05D000326 2.2e-35 154.5 458 41.5
CSS0014122 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.7e-35 153.7 430 46.5
CSS0026269 Camellia sinensis var. sinensis HOM05D004380 ORTHO05D005134 3.7e-35 153.7 430 46.5
FvH4_4g36560 Fragaria vesca HOM05D004380 ORTHO05D005134 6.3e-35 152.9 481 47.6
FAN12G0331 Fragaria x ananassa HOM05D004380 ORTHO05D005134 6.3e-35 152.9 481 47.6
FAN22G0510 Fragaria x ananassa HOM05D004380 ORTHO05D005134 8.2e-35 152.5 483 49.9
FAN17G2609 Fragaria x ananassa HOM05D004380 ORTHO05D005134 3.4e-33 147.1 482 45.4
Os08g0178300 Oryza sativa ssp. japonica HOM05D004380 ORTHO05D005134 1.0e-32 145.6 494 53.4
TAR629G2821 Trochodendron aralioides HOM05D004380 ORTHO05D005134 1.2e-30 138.7 500 33.8
QL12p007207 Quercus lobata HOM05D004380 ORTHO05D005134 1.6e-30 138.3 167 56.3
COL.COLO4_13527 Corchorus olitorius HOM05D004380 ORTHO05D005134 1.4e-29 135.2 111 70.3
Aqoxy3G00393 Aquilegia oxysepala HOM05D004380 ORTHO05D005134 2.3e-29 134.4 495 44.4
CiPaw.04G096200 Carya illinoinensis HOM05D004380 ORTHO05D005134 3.0e-29 134.0 504 29.8
Lj6C290G5 Lonicera japonica HOM05D004380 ORTHO05D005134 3.9e-29 133.7 527 38.5
VMungo0331G0855 Vigna mungo HOM05D004380 ORTHO05D005134 8.8e-29 132.5 506 36.4
Lsat_1_v5_gn_3_2421 Lactuca sativa HOM05D004380 ORTHO05D005134 2.0e-28 131.3 177 54.2
CAN.G1823.5 Capsicum annuum HOM05D004380 ORTHO05D005134 5.7e-28 129.8 143 59.4
CDE11G0710 Ceratophyllum demersum HOM05D004380 ORTHO05D005134 1.1e-26 125.6 439 40.1
CAN.G1186.1 Capsicum annuum HOM05D004380 ORTHO05D005134 1.4e-26 125.2 141 58.9
SHI10270 Sapria himalayana HOM05D004380 ORTHO05D005134 1.0e-24 119.0 179 53.6
ATR0665G406 Amborella trichopoda HOM05D004380 ORTHO05D005134 1.7e-24 118.2 526 49.0
Zm00001eb400590 Zea mays HOM05D004380 ORTHO05D005134 9.4e-23 112.5 180 45.6
Sp1g27590 Schrenkiella parvula HOM05D004380 ORTHO05D005134 1.2e-22 112.1 413 48.2
SEGI_39298 Sequoiadendron giganteum HOM05D004380 ORTHO05D005134 1.2e-22 112.1 517 44.7
arahy.Tifrunner.gnm1.ann1.ARJY2C Arachis hypogaea HOM05D004380 ORTHO05D005134 1.6e-22 111.7 132 53.8
THA.LOC104812727 Tarenaya hassleriana HOM05D004380 ORTHO05D005134 3.0e-21 107.5 113 57.5
HPP92_020129 Vanilla planifolia HOM05D004380 ORTHO05D005134 5.7e-20 103.2 132 51.5
SMO118G0163 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.4e-18 97.8 106 52.8
SMO144G0180 Selaginella moellendorffii HOM05D004380 ORTHO05D005134 2.4e-18 97.8 106 52.8
AagrBONN_evm.TU.Sc2ySwM_117.3835 Anthoceros agrestis HOM05D004380 ORTHO05D005134 2.2e-16 91.3 100 57.0
Potri.001G147100 Populus trichocarpa HOM05D004380 ORTHO05D005134 2.2e-16 91.3 107 53.3
TPR.G22617 Trifolium pratense HOM05D004380 ORTHO05D005134 2.2e-16 91.3 78 60.3
TPR.G11131 Trifolium pratense HOM05D004380 ORTHO05D005134 2.5e-15 87.8 137 43.8
CAN.G248.21 Capsicum annuum HOM05D004380 ORTHO05D005134 4.2e-15 87.0 107 51.4
Actinidia31472 Actinidia chinensis HOM05D004380 ORTHO05D005134 7.2e-15 86.3 230 34.8
arahy.Tifrunner.gnm1.ann1.I1PL9V Arachis hypogaea HOM05D004380 ORTHO05D005134 1.4e-13 82.0 76 67.1
Lj2C247T7 Lonicera japonica HOM05D004380 ORTHO05D005134 1.4e-13 82.0 76 67.1
Medtr8g446970 Medicago truncatula HOM05D004380 ORTHO05D005134 4.4e-12 77.0 79 53.2
Mapoly0062s0011 Marchantia polymorpha HOM05D004380 ORTHO05D005134 9.1e-10 69.3 502 45.0
CBR_g26347 Chara braunii HOM05D004380 ORTHO05D005134 1.6e-09 68.6 116 43.1
arahy.Tifrunner.gnm1.ann1.45D7QY Arachis hypogaea HOM05D004380 ORTHO05D005134 7.7e-09 66.2 81 56.8
Pp3c3_10050 Physcomitrium patens HOM05D004380 ORTHO05D005134 2.3e-08 64.7 489 45.4
TPR.G17657 Trifolium pratense HOM05D004380 ORTHO05D005134 3.8e-08 63.9 120 40.0
Phvul.011G076400 Phaseolus vulgaris HOM05D004380 ORTHO05D005134 1.9e-07 61.6 48 77.1
HPP92_020120 Vanilla planifolia HOM05D004380 ORTHO05D005134 4.2e-07 60.5 55 65.5
Hund11501 Selenicereus undatus HOM05D004380 ORTHO05D005134 7.2e-07 59.7 36 88.9
CARHR062710 Cardamine hirsuta HOM05D004380 ORTHO05D005134 1.6e-06 58.5 79 55.7
HPP92_020130 Vanilla planifolia HOM05D004380 ORTHO05D005134 1.6e-06 58.5 54 64.8
Sed0024296 Sechium edule HOM05D004380 ORTHO05D005134 3.6e-06 57.4 63 60.3


User provided reference genes

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