Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc22g0000940 Simmondsia chinensis HOM05D003894 ORTHO05D004584 2.7e-137 491.9 233 100.0
GSVIVG01004722001 Vitis vinifera HOM05D003894 ORTHO05D004584 4.4e-95 351.7 230 74.8
QL12p011698 Quercus lobata HOM05D003894 ORTHO05D004584 5.8e-95 351.3 228 74.6
Actinidia14416 Actinidia chinensis HOM05D003894 ORTHO05D004584 1.7e-94 349.7 228 74.6
CSS0010253 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 3.7e-94 348.6 228 72.8
CSS0041030 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 1.1e-93 347.1 228 72.8
CSS0035779 Camellia sinensis var. sinensis HOM05D003894 ORTHO05D004584 9.2e-93 344.0 218 73.4
CiPaw.12G051400 Carya illinoinensis HOM05D003894 ORTHO05D004584 2.0e-92 342.8 228 72.8
Atru.chr9.1291 Acer truncatum HOM05D003894 ORTHO05D004584 4.6e-92 341.7 223 74.4
TWI81G0562 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 1.3e-91 340.1 223 74.4
Thecc.03G249300 Theobroma cacao HOM05D003894 ORTHO05D004584 1.7e-91 339.7 218 73.4
Dinv39159 Davidia involucrata HOM05D003894 ORTHO05D004584 5.0e-91 338.2 230 72.2
Prupe.5G067100 Prunus persica HOM05D003894 ORTHO05D004584 5.0e-91 338.2 228 71.1
Rhsim11G0023700 Rhododendron simsii HOM05D003894 ORTHO05D004584 8.6e-91 337.4 218 72.9
Hma1.2p1_0316F.1_g122980 Hydrangea macrophylla HOM05D003894 ORTHO05D004584 1.5e-90 336.7 228 71.5
Cpa.g.sc29.176 Carica papaya HOM05D003894 ORTHO05D004584 1.9e-90 336.3 217 72.8
COL.COLO4_37151 Corchorus olitorius HOM05D003894 ORTHO05D004584 1.9e-90 336.3 218 72.9
MD06G1056700 Malus domestica HOM05D003894 ORTHO05D004584 9.5e-90 334.0 228 69.3
Migut.A01116 Erythranthe guttata HOM05D003894 ORTHO05D004584 1.1e-88 330.5 229 70.3
Gohir.D08G187500 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.4e-88 330.1 223 71.3
Nitab4.5_0001381g0150 Nicotiana tabacum HOM05D003894 ORTHO05D004584 1.4e-88 330.1 230 69.1
Gohir.A08G169100 Gossypium hirsutum HOM05D003894 ORTHO05D004584 5.2e-88 328.2 223 70.4
Sed0006464 Sechium edule HOM05D003894 ORTHO05D004584 5.2e-88 328.2 228 70.2
CiPaw.11G080600 Carya illinoinensis HOM05D003894 ORTHO05D004584 6.8e-88 327.8 228 70.6
Ciclev10020835m.g Citrus clementina HOM05D003894 ORTHO05D004584 8.9e-88 327.4 217 70.0
Duzib205G0957 Durio zibethinus HOM05D003894 ORTHO05D004584 8.9e-88 327.4 213 72.8
Solyc06g060770.3 Solanum lycopersicum HOM05D003894 ORTHO05D004584 8.9e-88 327.4 220 70.9
TWI60G0612 Tripterygium wilfordii HOM05D003894 ORTHO05D004584 2.0e-87 326.2 223 71.3
ClCG10G002550 Citrullus lanatus HOM05D003894 ORTHO05D004584 2.6e-87 325.9 217 72.8
PGR031G3663 Punica granatum HOM05D003894 ORTHO05D004584 3.4e-87 325.5 201 77.6
MELO3C013927.2 Cucumis melo HOM05D003894 ORTHO05D004584 5.8e-87 324.7 228 70.6
Eucgr.D02094 Eucalyptus grandis HOM05D003894 ORTHO05D004584 9.8e-87 323.9 211 74.9
Gorai.004G197200 Gossypium raimondii HOM05D003894 ORTHO05D004584 9.8e-87 323.9 223 70.4
Sopen06g020890 Solanum pennellii HOM05D003894 ORTHO05D004584 1.3e-86 323.6 220 70.0
TAR629G1092 Trochodendron aralioides HOM05D003894 ORTHO05D004584 1.3e-86 323.6 228 68.0
CsaV3_3G002580 Cucumis sativus L. HOM05D003894 ORTHO05D004584 1.7e-86 323.2 228 70.2
Oeu064622.1 Olea europaea HOM05D003894 ORTHO05D004584 1.7e-86 323.2 218 71.6
Gohir.A03G007600 Gossypium hirsutum HOM05D003894 ORTHO05D004584 2.2e-86 322.8 228 68.9
Medtr7g016670 Medicago truncatula HOM05D003894 ORTHO05D004584 2.9e-86 322.4 207 74.9
FAN04G2823 Fragaria x ananassa HOM05D003894 ORTHO05D004584 6.4e-86 321.2 221 70.1
FAN08G0890 Fragaria x ananassa HOM05D003894 ORTHO05D004584 6.4e-86 321.2 221 70.1
Nn6g33915 Nelumbo nucifera HOM05D003894 ORTHO05D004584 8.3e-86 320.9 228 67.1
FAN18G1468 Fragaria x ananassa HOM05D003894 ORTHO05D004584 1.1e-85 320.5 221 70.1
Gorai.003G172100 Gossypium raimondii HOM05D003894 ORTHO05D004584 1.1e-85 320.5 228 68.9
Glyma.05G060500 Glycine max HOM05D003894 ORTHO05D004584 1.4e-85 320.1 215 72.1
Hund14570 Selenicereus undatus HOM05D003894 ORTHO05D004584 1.4e-85 320.1 218 71.1
RcHm_v2.0_Chr7g0203621 Rosa chinensis HOM05D003894 ORTHO05D004584 1.9e-85 319.7 221 69.7
CAN.G62.34 Capsicum annuum HOM05D003894 ORTHO05D004584 3.2e-85 318.9 220 69.5
Ca_06903_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 3.2e-85 318.9 216 70.8
Lj4g0028027 Lotus japonicus HOM05D003894 ORTHO05D004584 3.2e-85 318.9 205 76.6
PGSC0003DMG401011882 Solanum tuberosum HOM05D003894 ORTHO05D004584 3.2e-85 318.9 220 69.5
TPR.G23384 Trifolium pratense HOM05D003894 ORTHO05D004584 3.2e-85 318.9 211 72.0
CAN.G1058.48 Capsicum annuum HOM05D003894 ORTHO05D004584 5.4e-85 318.2 231 68.0
Nitab4.5_0000618g0110 Nicotiana tabacum HOM05D003894 ORTHO05D004584 7.1e-85 317.8 211 72.0
Potri.003G078000 Populus trichocarpa HOM05D003894 ORTHO05D004584 1.2e-84 317.0 223 71.3
SGA_v2.0_scaffold199G41177 Striga asiatica HOM05D003894 ORTHO05D004584 1.6e-84 316.6 211 71.6
SGA_v2.0_scaffold104G30167 Striga asiatica HOM05D003894 ORTHO05D004584 2.1e-84 316.2 211 70.1
vmacro00193 Vaccinium macrocarpon HOM05D003894 ORTHO05D004584 2.7e-84 315.8 240 65.8
VMungo0251G1668 Vigna mungo HOM05D003894 ORTHO05D004584 6.0e-84 314.7 216 71.8
FvH4_5g19130 Fragaria vesca HOM05D003894 ORTHO05D004584 1.0e-83 313.9 222 69.8
Gohir.D03G163400 Gossypium hirsutum HOM05D003894 ORTHO05D004584 1.0e-83 313.9 219 68.5
Manes.01G081900 Manihot esculenta HOM05D003894 ORTHO05D004584 1.3e-83 313.5 215 68.4
Sabra03G0048400 Salix brachista HOM05D003894 ORTHO05D004584 1.7e-83 313.2 200 75.0
A01p20010 Brassica napus HOM05D003894 ORTHO05D004584 2.3e-83 312.8 212 69.8
BraA01t01924Z Brassica rapa HOM05D003894 ORTHO05D004584 2.3e-83 312.8 212 69.8
Phvul.003G221600 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 2.3e-83 312.8 216 71.3
Glyma.17G142800 Glycine max HOM05D003894 ORTHO05D004584 3.0e-83 312.4 189 78.3
Sopen08g026970 Solanum pennellii HOM05D003894 ORTHO05D004584 3.0e-83 312.4 230 67.0
EL10Ac5g12379 Beta vulgaris HOM05D003894 ORTHO05D004584 3.9e-83 312.0 218 68.3
Carub.0008s0035 Capsella rubella HOM05D003894 ORTHO05D004584 3.9e-83 312.0 213 68.1
Peaxi162Scf01022g00325 Petunia axillaris HOM05D003894 ORTHO05D004584 5.1e-83 311.6 220 68.6
BcaC09g50466 Brassica carinata HOM05D003894 ORTHO05D004584 1.5e-82 310.1 202 71.3
C01p25110 Brassica napus HOM05D003894 ORTHO05D004584 1.5e-82 310.1 202 71.3
Lalb_Chr16g0386751 Lupinus albus HOM05D003894 ORTHO05D004584 1.5e-82 310.1 193 75.6
Sp7g16820 Schrenkiella parvula HOM05D003894 ORTHO05D004584 1.9e-82 309.7 202 71.3
arahy.Tifrunner.gnm1.ann1.HK0HI4 Arachis hypogaea HOM05D003894 ORTHO05D004584 2.5e-82 309.3 228 66.7
arahy.Tifrunner.gnm1.ann1.HNG0SX Arachis hypogaea HOM05D003894 ORTHO05D004584 2.5e-82 309.3 230 68.3
Duzib084G0486 Durio zibethinus HOM05D003894 ORTHO05D004584 2.5e-82 309.3 218 69.3
AT4G17360 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 3.3e-82 308.9 202 71.8
AL7G37350 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 9.5e-82 307.4 202 70.3
Thhalv10025694m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 9.5e-82 307.4 202 70.8
BcaNung00098 Brassica carinata HOM05D003894 ORTHO05D004584 1.2e-81 307.0 202 70.3
arahy.Tifrunner.gnm1.ann1.0BBG36 Arachis hypogaea HOM05D003894 ORTHO05D004584 1.6e-81 306.6 228 66.7
BolC1t02463H Brassica oleracea HOM05D003894 ORTHO05D004584 2.1e-81 306.2 202 70.8
CARHR223970 Cardamine hirsuta HOM05D003894 ORTHO05D004584 2.1e-81 306.2 202 70.3
Solyc08g078490.4 Solanum lycopersicum HOM05D003894 ORTHO05D004584 2.1e-81 306.2 218 67.4
AT5G47435 Arabidopsis thaliana HOM05D003894 ORTHO05D004584 2.8e-81 305.8 214 67.3
CANSAT21G2005 Cannabis sativa HOM05D003894 ORTHO05D004584 3.6e-81 305.4 206 70.9
A06p45100 Brassica napus HOM05D003894 ORTHO05D004584 4.7e-81 305.1 202 71.3
BraA06t27379Z Brassica rapa HOM05D003894 ORTHO05D004584 4.7e-81 305.1 202 71.3
CARHR173940 Cardamine hirsuta HOM05D003894 ORTHO05D004584 4.7e-81 305.1 217 67.3
Thhalv10000960m.g Eutrema salsugineum HOM05D003894 ORTHO05D004584 4.7e-81 305.1 193 72.0
Carub.0007s2405 Capsella rubella HOM05D003894 ORTHO05D004584 6.2e-81 304.7 202 69.3
MSTRG.12111 Avicennia marina HOM05D003894 ORTHO05D004584 1.1e-80 303.9 210 67.1
AL8G10600 Arabidopsis lyrata HOM05D003894 ORTHO05D004584 5.2e-80 301.6 214 66.8
Sabra01G0134600 Salix brachista HOM05D003894 ORTHO05D004584 8.9e-80 300.8 244 63.1
BcaC06g34254 Brassica carinata HOM05D003894 ORTHO05D004584 1.5e-79 300.1 193 71.0
BolC7t43649H Brassica oleracea HOM05D003894 ORTHO05D004584 2.0e-79 299.7 193 71.0
PSO170G4158 Papaver somniferum HOM05D003894 ORTHO05D004584 3.4e-79 298.9 186 73.7
BcaC06g31388 Brassica carinata HOM05D003894 ORTHO05D004584 4.4e-79 298.5 200 70.0
Lalb_Chr05g0214381 Lupinus albus HOM05D003894 ORTHO05D004584 4.4e-79 298.5 206 69.4
Nitab4.5_0002289g0080 Nicotiana tabacum HOM05D003894 ORTHO05D004584 4.4e-79 298.5 240 63.8
Sp2g12140 Schrenkiella parvula HOM05D003894 ORTHO05D004584 4.4e-79 298.5 193 69.9
Aa31sc265G50 Aethionema arabicum HOM05D003894 ORTHO05D004584 5.8e-79 298.1 202 68.8
C07p31050 Brassica napus HOM05D003894 ORTHO05D004584 9.9e-79 297.4 193 70.5
Ca_24586_v3 Cicer arietinum L. HOM05D003894 ORTHO05D004584 9.9e-79 297.4 191 70.7
PSO017G7068 Papaver somniferum HOM05D003894 ORTHO05D004584 1.3e-78 297.0 186 73.1
TPR.G18144 Trifolium pratense HOM05D003894 ORTHO05D004584 1.3e-78 297.0 199 68.8
Cc08_g12260 Coffea canephora HOM05D003894 ORTHO05D004584 2.9e-78 295.8 241 63.1
CDE02G2221 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 3.8e-78 295.4 209 66.0
HanXRQChr08g0227781 Helianthus annuus HOM05D003894 ORTHO05D004584 1.1e-77 293.9 228 63.6
Lsat_1_v5_gn_3_1181 Lactuca sativa HOM05D003894 ORTHO05D004584 1.1e-77 293.9 218 65.6
SalBow6G6274 Salvia bowleyana HOM05D003894 ORTHO05D004584 1.1e-77 293.9 234 63.7
unitig_22.g6241 Utricularia gibba HOM05D003894 ORTHO05D004584 3.2e-77 292.4 229 62.0
Aa31LG6G100 Aethionema arabicum HOM05D003894 ORTHO05D004584 5.4e-77 291.6 203 67.0
DCAR_006838 Daucus carota HOM05D003894 ORTHO05D004584 1.6e-76 290.0 196 71.9
Aqoxy7G00816 Aquilegia oxysepala HOM05D003894 ORTHO05D004584 2.7e-76 289.3 219 63.5
Glyma.01G208000 Glycine max HOM05D003894 ORTHO05D004584 2.7e-76 289.3 187 71.1
VMungo1215G1221 Vigna mungo HOM05D003894 ORTHO05D004584 3.5e-76 288.9 196 69.4
Medtr5g012850 Medicago truncatula HOM05D003894 ORTHO05D004584 1.0e-75 287.3 217 62.2
Phvul.002G057400 Phaseolus vulgaris HOM05D003894 ORTHO05D004584 1.0e-75 287.3 196 69.4
DCAR_008499 Daucus carota HOM05D003894 ORTHO05D004584 9.6e-74 280.8 195 69.7
ECA233G0588 Erigeron canadensis HOM05D003894 ORTHO05D004584 9.6e-74 280.8 193 70.5
ATR0317G052 Amborella trichopoda HOM05D003894 ORTHO05D004584 8.1e-73 277.7 192 67.2
SEGI_14746 Sequoiadendron giganteum HOM05D003894 ORTHO05D004584 6.4e-70 268.1 181 65.7
CDE04G1229 Ceratophyllum demersum HOM05D003894 ORTHO05D004584 6.0e-68 261.5 172 68.6
Zm00001eb404490 Zea mays HOM05D003894 ORTHO05D004584 3.0e-67 259.2 186 64.5
arahy.Tifrunner.gnm1.ann1.31006K Arachis hypogaea HOM05D003894 ORTHO05D004584 8.7e-67 257.7 230 60.4
AagrBONN_evm.TU.Sc2ySwM_117.1331 Anthoceros agrestis HOM05D003894 ORTHO05D004584 4.0e-64 248.8 194 61.3
Pp3c2_3170 Physcomitrium patens HOM05D003894 ORTHO05D004584 9.0e-64 247.7 191 62.3
Pp3c1_39510 Physcomitrium patens HOM05D003894 ORTHO05D004584 4.5e-63 245.4 195 60.0
Pp3c14_22020 Physcomitrium patens HOM05D003894 ORTHO05D004584 7.6e-63 244.6 191 62.3
Os03g0102100 Oryza sativa ssp. japonica HOM05D003894 ORTHO05D004584 4.9e-62 241.9 177 65.5
SMO146G0337 Selaginella moellendorffii HOM05D003894 ORTHO05D004584 4.0e-56 222.2 202 55.4
AUR62007102 Chenopodium quinoa HOM05D003894 ORTHO05D004584 3.4e-55 219.2 133 76.7
Psat3g203360 Pisum sativum HOM05D003894 ORTHO05D004584 1.4e-53 213.8 140 74.3
Psat2g176960 Pisum sativum HOM05D003894 ORTHO05D004584 2.4e-53 213.0 140 70.7
Lj8A264T58 Lonicera japonica HOM05D003894 ORTHO05D004584 2.7e-52 209.5 140 72.1
PGSC0003DMG401004821 Solanum tuberosum HOM05D003894 ORTHO05D004584 6.0e-52 208.4 139 71.2
AUR62019965 Chenopodium quinoa HOM05D003894 ORTHO05D004584 1.3e-51 207.2 129 74.4
Nitab4.5_0001076g0020 Nicotiana tabacum HOM05D003894 ORTHO05D004584 3.1e-48 196.1 113 80.5
Lsat_1_v5_gn_1_54820 Lactuca sativa HOM05D003894 ORTHO05D004584 3.4e-47 192.6 132 67.4
Lsat_1_v5_gn_7_43960 Lactuca sativa HOM05D003894 ORTHO05D004584 3.4e-47 192.6 132 67.4
Lsat_1_v5_gn_8_19200 Lactuca sativa HOM05D003894 ORTHO05D004584 3.4e-47 192.6 132 67.4
Potri.001G156600 Populus trichocarpa HOM05D003894 ORTHO05D004584 4.9e-46 188.7 116 76.7
Peaxi162Scf00209g00012 Petunia axillaris HOM05D003894 ORTHO05D004584 9.3e-45 184.5 113 75.2
Mapoly0048s0089 Marchantia polymorpha HOM05D003894 ORTHO05D004584 6.9e-40 168.3 126 65.9
Lsat_1_v5_gn_3_140581 Lactuca sativa HOM05D003894 ORTHO05D004584 9.0e-40 167.9 116 69.0
Lsat_1_v5_gn_6_107601 Lactuca sativa HOM05D003894 ORTHO05D004584 9.0e-40 167.9 116 69.0
Lsat_1_v5_gn_6_98401 Lactuca sativa HOM05D003894 ORTHO05D004584 9.0e-40 167.9 116 69.0
Lsat_1_v5_gn_7_52220 Lactuca sativa HOM05D003894 ORTHO05D004584 9.0e-40 167.9 116 69.0
Lsat_1_v5_gn_8_116920 Lactuca sativa HOM05D003894 ORTHO05D004584 9.0e-40 167.9 116 69.0
Lsat_1_v5_gn_0_29701 Lactuca sativa HOM05D003894 ORTHO05D004584 2.6e-39 166.4 115 68.7
Lsat_1_v5_gn_4_3501 Lactuca sativa HOM05D003894 ORTHO05D004584 2.6e-39 166.4 116 68.1
Glyma.11G034300 Glycine max HOM05D003894 ORTHO05D004584 4.6e-36 155.6 103 70.9
PRCOL_00002707 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 2.4e-32 143.3 184 41.3
Haze_07898 Corylus avellana HOM05D003894 ORTHO05D004584 1.5e-31 140.6 90 75.6
Oeu024051.1 Olea europaea HOM05D003894 ORTHO05D004584 1.7e-25 120.6 80 70.0
HPP92_025623 Vanilla planifolia HOM05D003894 ORTHO05D004584 6.3e-25 118.6 71 76.1
Haze_07897 Corylus avellana HOM05D003894 ORTHO05D004584 1.1e-24 117.9 88 63.6
Cfa012736 Carpinus fangiana HOM05D003894 ORTHO05D004584 1.4e-24 117.5 88 63.6
Lsat_1_v5_gn_1_122420 Lactuca sativa HOM05D003894 ORTHO05D004584 4.1e-24 115.9 85 64.7
Actinidia02143 Actinidia chinensis HOM05D003894 ORTHO05D004584 8.8e-19 98.2 65 75.4
BcaB08g36006 Brassica carinata HOM05D003894 ORTHO05D004584 2.2e-17 93.6 64 60.9
Cc04_g06480 Coffea canephora HOM05D003894 ORTHO05D004584 3.7e-17 92.8 55 74.5
Cc00_g07750 Coffea canephora HOM05D003894 ORTHO05D004584 1.8e-16 90.5 55 72.7
CBR_g37463 Chara braunii HOM05D003894 ORTHO05D004584 1.6e-15 87.4 99 43.4
Cre10.g430450 Chlamydomonas reinhardtii HOM05D003894 ORTHO05D004584 5.0e-14 82.4 176 29.5
Glyma.11G034200 Glycine max HOM05D003894 ORTHO05D004584 1.2e-12 77.8 50 74.0
PRCOL_00004292 Prasinoderma coloniale HOM05D003894 ORTHO05D004584 1.2e-12 77.8 225 30.2
Cfa024956 Carpinus fangiana HOM05D003894 ORTHO05D004584 1.8e-11 73.9 175 30.3
TWI38G2300 Tripterygium wilfordii HOM05D000462 ORTHO05D001280 4.1e-08 62.8 42 69.0
Lsat_1_v5_gn_2_53921 Lactuca sativa HOM05D003894 ORTHO05D004584 2.9e-06 56.6 37 67.6


User provided reference genes

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