Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0006570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 0.0e+00 1150.6 601 100.0
AUR62020182 Chenopodium quinoa HOM05D001598 ORTHO05D007192 2.2e-239 832.4 592 73.3
Hund20974 Selenicereus undatus HOM05D001598 ORTHO05D007192 8.4e-239 830.5 594 73.7
Ciclev10014503m.g Citrus clementina HOM05D001598 ORTHO05D007192 2.4e-238 828.9 597 72.7
Dinv32128 Davidia involucrata HOM05D001598 ORTHO05D007192 1.6e-237 826.2 592 72.8
TAR375G0698 Trochodendron aralioides HOM05D001598 ORTHO05D007192 8.6e-236 820.5 595 72.3
Atru.chr3.2751 Acer truncatum HOM05D001598 ORTHO05D007192 5.6e-235 817.8 594 72.4
Gorai.009G080100 Gossypium raimondii HOM05D001598 ORTHO05D007192 9.6e-235 817.0 592 71.8
Gohir.D05G078700 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.8e-234 815.5 595 71.4
Gohir.A05G076000 Gossypium hirsutum HOM05D001598 ORTHO05D007192 2.4e-233 812.4 592 71.3
EL10Ac7g16239 Beta vulgaris HOM05D001598 ORTHO05D007192 5.2e-233 811.2 628 68.9
COL.COLO4_25318 Corchorus olitorius HOM05D001598 ORTHO05D007192 5.2e-233 811.2 592 72.1
CSS0038227 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.5e-232 809.7 593 72.0
Potri.009G156400 Populus trichocarpa HOM05D001598 ORTHO05D007192 2.0e-232 809.3 593 72.7
Manes.11G103300 Manihot esculenta HOM05D001598 ORTHO05D007192 4.9e-231 804.7 592 70.9
Aqoxy3G02341 Aquilegia oxysepala HOM05D001598 ORTHO05D007192 3.2e-230 802.0 592 69.8
vmacro14297 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 3.2e-230 802.0 597 69.5
MD11G1181200 Malus domestica HOM05D001598 ORTHO05D007192 7.1e-230 800.8 593 70.2
Sabra09G0122500 Salix brachista HOM05D001598 ORTHO05D007192 1.2e-229 800.0 592 71.1
Eucgr.J00614 Eucalyptus grandis HOM05D001598 ORTHO05D007192 1.6e-229 799.7 597 69.8
CiPaw.13G127200 Carya illinoinensis HOM05D001598 ORTHO05D007192 4.6e-229 798.1 595 70.6
PGR119G0245 Punica granatum HOM05D001598 ORTHO05D007192 6.0e-229 797.7 598 70.7
Hma1.2p1_0218F.1_g092460 Hydrangea macrophylla HOM05D001598 ORTHO05D007192 1.7e-228 796.2 592 70.3
Rhsim01G0197500 Rhododendron simsii HOM05D001598 ORTHO05D007192 2.3e-228 795.8 592 69.9
DCAR_000741 Daucus carota HOM05D001598 ORTHO05D007192 5.6e-227 791.2 593 68.8
CARHR191850 Cardamine hirsuta HOM05D001598 ORTHO05D007192 1.6e-226 789.6 592 68.4
Prupe.6G153900 Prunus persica HOM05D001598 ORTHO05D007192 8.1e-226 787.3 591 70.4
GSVIVG01037501001 Vitis vinifera HOM05D001598 ORTHO05D007192 8.1e-226 787.3 592 70.4
Lalb_Chr10g0105801 Lupinus albus HOM05D001598 ORTHO05D007192 1.1e-225 786.9 592 69.4
Solyc01g009050.3 Solanum lycopersicum HOM05D001598 ORTHO05D007192 4.0e-225 785.0 599 68.9
Sopen01g004540 Solanum pennellii HOM05D001598 ORTHO05D007192 5.3e-225 784.6 599 69.1
CANSAT54G2824 Cannabis sativa HOM05D001598 ORTHO05D007192 1.2e-224 783.5 596 69.6
TWI31G0930 Tripterygium wilfordii HOM05D001598 ORTHO05D007192 1.2e-224 783.5 592 70.1
C03p11930 Brassica napus HOM05D001598 ORTHO05D007192 1.5e-224 783.1 592 68.2
Phvul.008G209600 Phaseolus vulgaris HOM05D001598 ORTHO05D007192 2.0e-224 782.7 592 69.8
Migut.N02410 Erythranthe guttata HOM05D001598 ORTHO05D007192 2.6e-224 782.3 592 69.3
A03p10390 Brassica napus HOM05D001598 ORTHO05D007192 7.6e-224 780.8 592 67.9
BraA03t10351Z Brassica rapa HOM05D001598 ORTHO05D007192 7.6e-224 780.8 593 68.0
Ah.08g222590 Amaranthus hybridus HOM05D001598 ORTHO05D007192 2.9e-223 778.9 542 75.1
AL6G32560 Arabidopsis lyrata HOM05D001598 ORTHO05D007192 4.9e-223 778.1 592 67.9
BolC3t13663H Brassica oleracea HOM05D001598 ORTHO05D007192 6.4e-223 777.7 593 67.3
Glyma.02G272700 Glycine max HOM05D001598 ORTHO05D007192 8.4e-223 777.3 592 69.3
AT5G20990 Arabidopsis thaliana HOM05D001598 ORTHO05D007192 1.4e-222 776.5 592 67.7
SalBow3G4459 Salvia bowleyana HOM05D001598 ORTHO05D007192 1.9e-222 776.2 597 67.5
Sp6g23530 Schrenkiella parvula HOM05D001598 ORTHO05D007192 2.4e-222 775.8 592 67.2
RcHm_v2.0_Chr5g0048741 Rosa chinensis HOM05D001598 ORTHO05D007192 4.2e-222 775.0 593 69.3
CAN.G651.7 Capsicum annuum HOM05D001598 ORTHO05D007192 5.4e-222 774.6 597 68.0
Nitab4.5_0002300g0120 Nicotiana tabacum HOM05D001598 ORTHO05D007192 5.4e-222 774.6 597 67.3
LjContig00564g0017485 Lotus japonicus HOM05D001598 ORTHO05D007192 1.2e-221 773.5 592 68.9
Thhalv10012894m.g Eutrema salsugineum HOM05D001598 ORTHO05D007192 1.6e-221 773.1 592 67.6
Carub.0006s1931 Capsella rubella HOM05D001598 ORTHO05D007192 3.9e-220 768.5 592 66.9
SGA_v2.0_scaffold16G07584 Striga asiatica HOM05D001598 ORTHO05D007192 1.1e-219 766.9 592 68.4
Sed0001025 Sechium edule HOM05D001598 ORTHO05D007192 1.5e-219 766.5 595 67.4
Medtr5g087490 Medicago truncatula HOM05D001598 ORTHO05D007192 5.6e-219 764.6 592 68.9
Cc01_g07890 Coffea canephora HOM05D001598 ORTHO05D007192 7.4e-219 764.2 599 67.6
VMungo0647G2429 Vigna mungo HOM05D001598 ORTHO05D007192 9.6e-219 763.8 593 68.5
HanXRQChr06g0180651 Helianthus annuus HOM05D001598 ORTHO05D007192 1.3e-218 763.5 592 68.6
PSO063G3947 Papaver somniferum HOM05D001598 ORTHO05D007192 2.1e-218 762.7 592 67.7
CsaV3_1G041840 Cucumis sativus L. HOM05D001598 ORTHO05D007192 3.6e-218 761.9 595 67.7
MELO3C015599.2 Cucumis melo HOM05D001598 ORTHO05D007192 5.3e-217 758.1 595 67.2
MSTRG.12417 Avicennia marina HOM05D001598 ORTHO05D007192 6.9e-217 757.7 592 67.7
ECA247G1799 Erigeron canadensis HOM05D001598 ORTHO05D007192 6.9e-217 757.7 596 67.1
AUR62001598 Chenopodium quinoa HOM05D001598 ORTHO05D007192 1.2e-216 756.9 623 66.8
arahy.Tifrunner.gnm1.ann1.4UW9RQ Arachis hypogaea HOM05D001598 ORTHO05D007192 1.5e-216 756.5 631 66.1
arahy.Tifrunner.gnm1.ann1.IS34PQ Arachis hypogaea HOM05D001598 ORTHO05D007192 2.6e-216 755.7 631 66.2
ClCG03G014390 Citrullus lanatus HOM05D001598 ORTHO05D007192 1.3e-215 753.4 594 67.7
TPR.G11692 Trifolium pratense HOM05D001598 ORTHO05D007192 8.4e-215 750.7 599 67.1
Lsat_1_v5_gn_2_37520 Lactuca sativa HOM05D001598 ORTHO05D007192 1.8e-212 743.0 605 65.8
Actinidia22467 Actinidia chinensis HOM05D001598 ORTHO05D007192 2.3e-212 742.7 592 67.4
unitig_8.g2986 Utricularia gibba HOM05D001598 ORTHO05D007192 1.8e-209 733.0 596 67.3
FAN25G1601 Fragaria x ananassa HOM05D001598 ORTHO05D007192 2.4e-209 732.6 597 65.7
MBI07_g03077_MAGBIO Magnolia biondii HOM05D001598 ORTHO05D007192 3.1e-209 732.3 600 65.0
FAN21G0325 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.9e-209 731.1 593 65.8
ATR0215G007 Amborella trichopoda HOM05D001598 ORTHO05D007192 7.6e-208 727.6 596 64.4
FAN11G2542 Fragaria x ananassa HOM05D001598 ORTHO05D007192 6.5e-207 724.5 596 64.8
Aa31LG1G13740 Aethionema arabicum HOM05D001598 ORTHO05D007192 1.0e-204 717.2 592 62.8
Zm00001eb432770 Zea mays HOM05D001598 ORTHO05D007192 1.8e-204 716.5 594 64.5
Nitab4.5_0000428g0110 Nicotiana tabacum HOM05D001598 ORTHO05D007192 2.3e-204 716.1 597 63.5
Psat2g023160 Pisum sativum HOM05D001598 ORTHO05D007192 1.9e-198 696.4 541 67.7
Haze_23633 Corylus avellana HOM05D001598 ORTHO05D007192 6.1e-197 691.4 678 58.1
Thecc.09G265000 Theobroma cacao HOM05D001598 ORTHO05D007192 1.8e-196 689.9 592 64.4
Oeu051504.1 Olea europaea HOM05D001598 ORTHO05D007192 2.2e-194 682.9 597 63.8
Cpa.g.sc34.224 Carica papaya HOM05D001598 ORTHO05D007192 4.5e-192 675.2 555 65.8
CDE02G2133 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 1.6e-189 666.8 588 61.1
Peaxi162Scf00050g02227 Petunia axillaris HOM05D001598 ORTHO05D007192 5.7e-187 658.3 796 50.3
FvH4_3g26260 Fragaria vesca HOM05D001598 ORTHO05D007192 5.9e-184 648.3 518 66.2
Pp3c14_4050 Physcomitrium patens HOM05D001598 ORTHO05D007192 5.9e-184 648.3 611 57.1
CDE06G2705 Ceratophyllum demersum HOM05D001598 ORTHO05D007192 3.0e-180 636.0 626 57.5
CSS0048937 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.2e-176 624.0 485 69.1
QL01p007286 Quercus lobata HOM05D001598 ORTHO05D007192 4.7e-173 612.1 656 54.4
Ca_06138_v3 Cicer arietinum L. HOM05D001598 ORTHO05D007192 4.0e-172 609.0 592 57.9
SMO145G0256 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.2e-171 607.4 592 55.9
Lj2C893G11 Lonicera japonica HOM05D001598 ORTHO05D007192 1.4e-169 600.5 483 65.6
AagrBONN_evm.TU.Sc2ySwM_228.3025 Anthoceros agrestis HOM05D001598 ORTHO05D007192 2.7e-160 569.7 609 52.4
HPP92_013468 Vanilla planifolia HOM05D001598 ORTHO05D007192 1.2e-157 560.8 619 52.7
HPP92_013469 Vanilla planifolia HOM05D001598 ORTHO05D007192 8.3e-154 548.1 516 57.0
SEGI_02371 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 1.5e-147 527.3 440 61.1
Mapoly1495s0001 Marchantia polymorpha HOM05D001598 ORTHO05D007192 7.8e-144 515.0 491 55.4
Lj2A895G19 Lonicera japonica HOM05D001598 ORTHO05D007192 1.1e-126 458.0 435 57.5
Atru.ctg664.11 Acer truncatum HOM05D001598 ORTHO05D007192 4.7e-125 452.6 432 59.5
Cre10.g451400 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 5.2e-116 422.5 463 51.2
SEGI_00915 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 2.8e-109 400.2 349 59.0
MCO09G295 Micromonas commoda HOM05D001598 ORTHO05D007192 9.7e-86 322.0 437 45.3
AagrBONN_evm.TU.Sc2ySwM_117.1323 Anthoceros agrestis HOM05D001598 ORTHO05D007192 1.0e-79 302.0 411 43.6
SHI25335 Sapria himalayana HOM05D001598 ORTHO05D000001 5.3e-76 289.7 237 60.3
PRCOL_00000516 Prasinoderma coloniale HOM05D005603 ORTHO05D006944 2.2e-61 241.1 376 42.6
vmacro23059 Vaccinium macrocarpon HOM05D001598 ORTHO05D007192 2.7e-56 224.2 249 53.4
TPR.G11462 Trifolium pratense HOM05D001598 ORTHO05D007192 2.6e-54 217.6 285 47.7
CSS0046041 Camellia sinensis var. sinensis HOM05D001598 ORTHO05D007192 1.3e-45 188.7 108 84.3
Nn1g00103 Nelumbo nucifera HOM05D001598 ORTHO05D007192 3.7e-45 187.2 139 69.1
Lj2A895T22 Lonicera japonica HOM05D001598 ORTHO05D007192 6.3e-45 186.4 111 80.2
CBR_g53773 Chara braunii HOM05D000019 ORTHO05D000002 2.7e-43 181.0 379 33.5
HPP92_013448 Vanilla planifolia HOM05D001598 ORTHO05D007192 4.0e-39 167.2 109 73.4
TPR.G24627 Trifolium pratense HOM05D001598 ORTHO05D007192 8.3e-37 159.5 146 55.5
Zm00001eb067470 Zea mays HOM05D001598 ORTHO05D007192 1.8e-36 158.3 171 53.2
QL01p007301 Quercus lobata HOM05D001598 ORTHO05D007192 4.1e-36 157.1 99 80.8
CBR_g53784 Chara braunii HOM05D001598 ORTHO05D007192 5.4e-36 156.8 138 60.9
HanXRQChr07g0205981 Helianthus annuus HOM05D001598 ORTHO05D007192 4.7e-32 143.7 94 76.6
Lj2C893T10 Lonicera japonica HOM05D001598 ORTHO05D007192 1.5e-30 138.7 79 81.0
SEGI_37017 Sequoiadendron giganteum HOM05D001598 ORTHO05D007192 7.5e-30 136.3 99 67.7
Mapoly0056s0125 Marchantia polymorpha HOM05D001598 ORTHO05D007192 1.2e-27 129.0 96 67.7
SHI25334 Sapria himalayana HOM05D001598 ORTHO05D000001 2.7e-27 127.9 90 68.9
SGA_v2.0_scaffold6G03251 Striga asiatica HOM05D001598 ORTHO05D007192 3.3e-25 120.9 378 31.0
Ca_02574_v3 Cicer arietinum L. HOM05D000009 ORTHO05D000008 3.5e-19 100.9 84 63.1
Ca_14173_v3 Cicer arietinum L. HOM05D000092 ORTHO05D005910 6.0e-19 100.1 96 58.3
PRCOL_00002568 Prasinoderma coloniale HOM05D001598 ORTHO05D007192 5.1e-18 97.1 130 46.2
Glyma.14G045450 Glycine max HOM05D001598 ORTHO05D007192 6.6e-18 96.7 65 69.2
Sc01g0005570 Simmondsia chinensis HOM05D001598 ORTHO05D007192 2.8e-16 91.3 67 68.7
Os04g0661600 Oryza sativa ssp. japonica HOM05D001598 ORTHO05D007192 2.6e-14 84.7 61 70.5
MCO03G199 Micromonas commoda HOM05D001598 ORTHO05D007192 4.4e-14 84.0 135 40.0
Cre06.g282150 Chlamydomonas reinhardtii HOM05D001598 ORTHO05D007192 5.4e-12 77.0 129 37.2
Gohir.D02G147550 Gossypium hirsutum HOM05D006828 ORTHO05D008312 7.1e-12 76.6 50 74.0
Gorai.013G167300 Gossypium raimondii HOM05D006828 ORTHO05D008312 7.1e-12 76.6 50 74.0
Gohir.D05G085901 Gossypium hirsutum HOM05D001598 ORTHO05D008312 6.0e-11 73.6 50 70.0
SMO307G0084 Selaginella moellendorffii HOM05D001598 ORTHO05D007192 1.6e-08 65.5 65 46.2
TPR.G22712 Trifolium pratense HOM05D001598 ORTHO05D046738 3.1e-07 61.2 65 56.9
Glyma.16G121250 Glycine max HOM05D001598 ORTHO05D046738 4.4e-06 57.4 67 53.7


User provided reference genes

Program Settings