Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 2.1e-123 446.4 370 100.0
EL10Ac7g15904 Beta vulgaris HOM05D002034 ORTHO05D006399 4.6e-54 216.1 252 61.1
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.3e-52 209.5 244 62.7
Actinidia34475 Actinidia chinensis HOM05D002034 ORTHO05D006399 9.6e-52 208.4 244 62.3
Potri.001G281300 Populus trichocarpa HOM05D002034 ORTHO05D006399 2.8e-51 206.8 263 62.4
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 2.4e-50 203.8 259 55.6
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.6e-49 200.3 242 61.6
vmacro14615 Vaccinium macrocarpon HOM05D002034 ORTHO05D006399 3.4e-49 199.9 265 56.6
Hund18957 Selenicereus undatus HOM05D002034 ORTHO05D006399 3.8e-48 196.4 249 57.8
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 2.4e-47 193.7 243 61.7
Hma1.2p1_0841F.1_g226910 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.3e-45 188.0 239 61.5
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 8.7e-45 185.3 244 50.4
Ciclev10027796m.g Citrus clementina HOM05D000417 ORTHO05D000342 1.5e-44 184.5 273 52.0
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 1.6e-43 181.0 241 59.3
Actinidia23869 Actinidia chinensis HOM05D002034 ORTHO05D006399 2.1e-43 180.6 242 55.4
Dinv28685 Davidia involucrata HOM05D002034 ORTHO05D006399 6.2e-43 179.1 245 62.4
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 2.4e-42 177.2 243 58.8
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.5e-41 174.5 241 55.6
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 1.5e-41 174.5 244 57.4
QL01p039969 Quercus lobata HOM05D002034 ORTHO05D006399 4.5e-41 172.9 253 56.9
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 7.6e-41 172.2 283 53.7
BraA03t10531Z Brassica rapa HOM05D002034 ORTHO05D004251 4.9e-40 169.5 247 45.3
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 2.4e-39 167.2 242 59.5
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 3.2e-39 166.8 251 56.2
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 4.2e-39 166.4 259 52.5
Phvul.008G257600 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 5.5e-39 166.0 254 51.6
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 7.1e-39 165.6 241 61.0
Psat5g153880 Pisum sativum HOM05D002034 ORTHO05D006399 4.6e-38 162.9 257 49.8
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 6.0e-38 162.5 264 50.4
Carub.0008s1906 Capsella rubella HOM05D002034 ORTHO05D006399 1.0e-37 161.8 245 49.0
Lj6g0014994 Lotus japonicus HOM05D002034 ORTHO05D006399 1.8e-37 161.0 260 53.1
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 2.3e-37 160.6 245 58.0
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 3.0e-37 160.2 271 49.8
C03p14310 Brassica napus HOM05D002034 ORTHO05D006399 6.7e-37 159.1 247 45.3
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 6.7e-37 159.1 250 52.8
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 8.7e-37 158.7 247 53.0
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 1.1e-36 158.3 253 56.5
VMungo0647G1676 Vigna mungo HOM05D002034 ORTHO05D006399 1.1e-36 158.3 251 56.6
AUR62009684 Chenopodium quinoa HOM05D002034 ORTHO05D006399 1.9e-36 157.5 158 63.9
TWI79G0783 Tripterygium wilfordii HOM05D002034 ORTHO05D006399 7.4e-36 155.6 259 49.4
Ah.08g215230 Amaranthus hybridus HOM05D002034 ORTHO05D006399 1.3e-35 154.8 285 46.0
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 1.3e-35 154.8 256 51.2
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 1.3e-35 154.8 260 55.8
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.6e-35 154.5 264 51.5
CDE06G0527 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.1e-35 154.1 289 46.7
Aa31LG11G250 Aethionema arabicum HOM05D002034 ORTHO05D006399 4.8e-35 152.9 246 51.2
AL8G34690 Arabidopsis lyrata HOM05D002034 ORTHO05D006399 8.1e-35 152.1 251 44.2
Aqoxy1G01307 Aquilegia oxysepala HOM05D002034 ORTHO05D006399 1.8e-34 151.0 260 52.7
BolC3t13875H Brassica oleracea HOM05D002034 ORTHO05D006399 1.8e-34 151.0 255 44.3
CARHR272300 Cardamine hirsuta HOM05D002034 ORTHO05D006399 5.3e-34 149.4 261 45.6
Sabra16G0175000 Salix brachista HOM05D002034 ORTHO05D006399 1.5e-33 147.9 259 51.7
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 3.4e-33 146.7 288 44.8
AUR62001888 Chenopodium quinoa HOM05D002034 ORTHO05D006399 4.5e-33 146.4 151 62.9
AT5G58470 Arabidopsis thaliana HOM05D002034 ORTHO05D006399 5.8e-33 146.0 249 47.4
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 7.6e-33 145.6 248 44.4
HPP92_025110 Vanilla planifolia HOM05D002034 ORTHO05D006399 1.0e-32 145.2 241 41.9
MBI05_g02399_MAGBIO Magnolia biondii HOM05D002034 ORTHO05D006399 2.2e-32 144.1 242 49.2
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 2.9e-32 143.7 272 49.3
Medtr3g031740 Medicago truncatula HOM05D002034 ORTHO05D006399 4.9e-32 142.9 266 45.5
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 6.5e-32 142.5 259 46.3
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 2.5e-31 140.6 243 45.7
Lalb_Chr10g0103541 Lupinus albus HOM05D002034 ORTHO05D006399 2.5e-31 140.6 257 52.5
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 3.2e-31 140.2 240 55.0
Thhalv10012621m.g Eutrema salsugineum HOM05D000417 ORTHO05D000342 5.5e-31 139.4 240 44.6
Oeu053356.2 Olea europaea HOM05D002034 ORTHO05D006399 7.1e-31 139.0 242 56.2
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 3.5e-30 136.7 243 44.9
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 6.0e-30 136.0 243 44.4
Hma1.2p1_2630F.1_g325730 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 6.0e-30 136.0 197 54.3
TAR633G1742 Trochodendron aralioides HOM05D002034 ORTHO05D006399 1.0e-29 135.2 246 50.0
SGA_v2.0_scaffold104G30143 Striga asiatica HOM05D002034 ORTHO05D006399 3.0e-29 133.7 286 50.3
ECA248G0185 Erigeron canadensis HOM05D002034 ORTHO05D006399 3.9e-29 133.3 288 49.0
Atru.chr3.4131 Acer truncatum HOM05D002034 ORTHO05D006399 8.7e-29 132.1 271 50.6
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 8.7e-29 132.1 241 41.1
BraA02t05843Z Brassica rapa HOM05D002034 ORTHO05D006399 1.1e-28 131.7 244 42.6
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 1.1e-28 131.7 278 48.6
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 1.9e-28 131.0 261 48.3
A10p15750 Brassica napus HOM05D002034 ORTHO05D004251 3.3e-28 130.2 243 44.0
COL.COLO4_11127 Corchorus olitorius HOM05D002034 ORTHO05D006399 3.3e-28 130.2 131 62.6
Gohir.A03G026400 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.3e-28 129.8 253 49.8
DCAR_007354 Daucus carota HOM05D002034 ORTHO05D006399 9.6e-28 128.6 258 39.1
SHI19198 Sapria himalayana HOM05D002034 ORTHO05D006399 9.6e-28 128.6 276 39.1
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.6e-27 127.9 245 47.8
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 2.1e-27 127.5 248 47.6
Gohir.D05G108500 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.8e-27 127.1 241 48.5
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 3.7e-27 126.7 262 49.2
BraA10t43645Z Brassica rapa HOM05D002034 ORTHO05D006399 6.3e-27 125.9 251 44.2
ATR0174G006 Amborella trichopoda HOM05D002034 ORTHO05D006399 8.2e-27 125.6 331 39.0
arahy.Tifrunner.gnm1.ann1.99AA0S Arachis hypogaea HOM05D002034 ORTHO05D006399 8.2e-27 125.6 264 48.5
FAN21G0003 Fragaria x ananassa HOM05D002034 ORTHO05D006399 8.2e-27 125.6 262 51.5
Sed0020719 Sechium edule HOM05D002034 ORTHO05D006399 1.1e-26 125.2 263 47.5
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.4e-26 124.0 260 49.6
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 5.3e-26 122.9 266 42.9
BcaB05g22434 Brassica carinata HOM05D002034 ORTHO05D006399 9.0e-26 122.1 251 45.0
BolC9t57892H Brassica oleracea HOM05D002034 ORTHO05D006399 1.2e-25 121.7 243 42.0
Sp6g20160 Schrenkiella parvula HOM05D002034 ORTHO05D006399 1.2e-25 121.7 241 45.6
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 2.6e-25 120.6 258 48.8
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 2.6e-25 120.6 258 48.8
Lsat_1_v5_gn_5_174460 Lactuca sativa HOM05D000417 ORTHO05D000342 2.6e-25 120.6 250 50.8
A03p12200 Brassica napus HOM05D002034 ORTHO05D004251 3.4e-25 120.2 253 39.5
Gorai.009G112700 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.4e-25 120.2 239 48.1
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 4.5e-25 119.8 258 48.4
BcaB08g36182 Brassica carinata HOM05D002034 ORTHO05D006399 5.9e-25 119.4 242 41.3
CDE04G0201 Ceratophyllum demersum HOM05D002034 ORTHO05D006399 2.2e-24 117.5 182 50.0
Lj2A1091G43 Lonicera japonica HOM05D002034 ORTHO05D006399 2.2e-24 117.5 243 45.3
Lalb_Chr04g0252031 Lupinus albus HOM05D002034 ORTHO05D006399 2.2e-24 117.5 257 49.4
Solyc06g082220.4 Solanum lycopersicum HOM05D002034 ORTHO05D006399 2.2e-24 117.5 154 60.4
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 5.0e-24 116.3 296 39.5
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 5.0e-24 116.3 272 41.5
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 6.5e-24 115.9 255 47.8
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 1.1e-23 115.2 256 47.7
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 1.4e-23 114.8 256 47.7
Phvul.006G072900 Phaseolus vulgaris HOM05D002034 ORTHO05D006399 3.2e-23 113.6 272 47.8
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 4.2e-23 113.2 243 46.9
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 5.5e-23 112.8 245 43.7
Ca_05091_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 5.5e-23 112.8 253 54.2
Ca_14994_v3 Cicer arietinum L. HOM05D002034 ORTHO05D006399 5.5e-23 112.8 253 54.2
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 7.2e-23 112.5 254 43.3
Gohir.A05G108332 Gossypium hirsutum HOM05D002034 ORTHO05D006399 7.2e-23 112.5 244 36.5
BolC9t57305H Brassica oleracea HOM05D002034 ORTHO05D006399 1.2e-22 111.7 247 42.5
C09p44360 Brassica napus HOM05D002034 ORTHO05D006399 3.5e-22 110.2 248 46.0
A02p07680 Brassica napus HOM05D002034 ORTHO05D006399 1.8e-21 107.8 235 48.5
Cpa.g.sc2.376 Carica papaya HOM05D002034 ORTHO05D006399 2.3e-21 107.5 243 46.1
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 3.9e-21 106.7 252 49.2
RcHm_v2.0_Chr5g0071281 Rosa chinensis HOM05D002034 ORTHO05D006399 3.9e-21 106.7 268 47.0
CBR_g17146 Chara braunii HOM05D002034 ORTHO05D006399 8.7e-21 105.5 275 37.5
Glyma.11G165000 Glycine max HOM05D002034 ORTHO05D006399 2.5e-20 104.0 259 47.1
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 1.3e-19 101.7 302 42.4
FAN16G2984 Fragaria x ananassa HOM05D002034 ORTHO05D006399 1.4e-18 98.2 264 47.3
Glyma.18G058200 Glycine max HOM05D002034 ORTHO05D006399 9.0e-18 95.5 258 47.7
FAN11G3559 Fragaria x ananassa HOM05D002034 ORTHO05D006399 2.6e-17 94.0 260 46.2
FvH4_3g39510 Fragaria vesca HOM05D002034 ORTHO05D006399 4.5e-17 93.2 264 46.2
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 7.7e-17 92.4 294 38.1
C04p55240 Brassica napus HOM05D002034 ORTHO05D006399 6.5e-16 89.4 128 49.2
Os01g0164400 Oryza sativa ssp. japonica HOM05D002034 ORTHO05D006399 8.5e-16 89.0 53 73.6
AagrBONN_evm.TU.Sc2ySwM_344.1306 Anthoceros agrestis HOM05D002034 ORTHO05D006399 3.2e-15 87.0 52 78.8
Pp3c12_3430 Physcomitrium patens HOM05D002034 ORTHO05D006399 7.2e-15 85.9 240 37.1
Mapoly0074s0009 Marchantia polymorpha HOM05D002034 ORTHO05D006399 1.0e-13 82.0 45 80.0
FAN25G3394 Fragaria x ananassa HOM05D000417 ORTHO05D000342 3.0e-13 80.5 256 45.3
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 3.0e-13 80.5 50 78.0
Pp3c17_1620 Physcomitrium patens HOM05D002034 ORTHO05D006399 4.3e-12 76.6 245 31.4
SMO358G0702 Selaginella moellendorffii HOM05D002034 ORTHO05D006399 4.3e-12 76.6 42 81.0
Haze_24395 Corylus avellana HOM05D002034 ORTHO05D006399 2.2e-11 74.3 172 45.3
VMungo0540G2394 Vigna mungo HOM05D002034 ORTHO05D006399 2.2e-11 74.3 273 42.9
BcaC01g04152 Brassica carinata HOM05D002034 ORTHO05D006399 2.8e-11 73.9 233 32.2
BolC9t53947H Brassica oleracea HOM05D002034 ORTHO05D006399 1.4e-10 71.6 55 63.6
TAR623G0025 Trochodendron aralioides HOM05D002034 ORTHO05D006399 2.4e-10 70.9 245 42.9
A09p54750 Brassica napus HOM05D002034 ORTHO05D006399 3.1e-10 70.5 124 50.8
C02p38030 Brassica napus HOM05D002034 ORTHO05D006399 1.5e-09 68.2 223 32.7
MD11G1063400 Malus domestica HOM05D002034 ORTHO05D006399 6.5e-08 62.8 264 42.8
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 1.4e-07 61.6 39 64.1
Haze_11731 Corylus avellana HOM05D005264 ORTHO05D005428 1.4e-07 61.6 45 57.8
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 2.5e-07 60.8 42 61.9
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 7.2e-07 59.3 42 61.9
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 9.4e-07 58.9 29 79.3
MCO15G549 Micromonas commoda HOM05D005264 ORTHO05D005428 1.6e-06 58.2 41 58.5
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 2.1e-06 57.8 47 57.4
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 2.1e-06 57.8 41 61.0
CBR_g224 Chara braunii HOM05D005264 ORTHO05D005428 2.7e-06 57.4 46 56.5
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 4.7e-06 56.6 43 58.1
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 7.9e-06 55.8 39 66.7
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 7.9e-06 55.8 39 66.7
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 7.9e-06 55.8 39 59.0
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 7.9e-06 55.8 26 84.6
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 7.9e-06 55.8 26 84.6


User provided reference genes

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