Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0004890 Simmondsia chinensis HOM05D006271 ORTHO05D008237 7.8e-184 647.1 357 100.0
EL10Ac7g15870 Beta vulgaris HOM05D006271 ORTHO05D008237 4.2e-97 359.0 364 64.0
CiPaw.13G067000 Carya illinoinensis HOM05D006271 ORTHO05D008237 4.4e-86 322.4 374 58.3
Hund18965 Selenicereus undatus HOM05D006271 ORTHO05D008237 5.7e-86 322.0 345 59.4
Ciclev10001595m.g Citrus clementina HOM05D006271 ORTHO05D008237 2.2e-85 320.1 365 55.6
GSVIVG01024608001 Vitis vinifera HOM05D006271 ORTHO05D008237 3.7e-85 319.3 360 60.0
Cfa011797 Carpinus fangiana HOM05D006271 ORTHO05D008237 7.0e-84 315.1 288 61.5
TAR369G0029 Trochodendron aralioides HOM05D006271 ORTHO05D008237 1.7e-82 310.5 361 51.2
Haze_24435 Corylus avellana HOM05D006271 ORTHO05D008237 6.6e-82 308.5 288 60.1
MD03G1058300 Malus domestica HOM05D006271 ORTHO05D008237 1.5e-78 297.4 371 55.8
Cpa.g.c32708 Carica papaya HOM05D006271 ORTHO05D008237 2.6e-78 296.6 288 59.0
TAR633G1937 Trochodendron aralioides HOM05D006271 ORTHO05D008237 2.6e-78 296.6 310 53.2
MD11G1060500 Malus domestica HOM05D006271 ORTHO05D008237 4.4e-78 295.8 358 56.4
Hma1.2p1_0613F.1_g189190 Hydrangea macrophylla HOM05D006271 ORTHO05D008237 7.5e-78 295.0 294 57.5
AUR62009716 Chenopodium quinoa HOM05D006271 ORTHO05D008237 1.7e-77 293.9 359 52.1
Nitab4.5_0003270g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 6.4e-77 292.0 356 52.2
Nitab4.5_0002768g0040 Nicotiana tabacum HOM05D006271 ORTHO05D008237 1.2e-75 287.7 361 53.2
RcHm_v2.0_Chr6g0268191 Rosa chinensis HOM05D006271 ORTHO05D008237 1.2e-75 287.7 293 55.6
CAN.G1095.29 Capsicum annuum HOM05D006271 ORTHO05D008237 2.7e-75 286.6 290 56.6
Atru.chr5.2170 Acer truncatum HOM05D006271 ORTHO05D008237 7.8e-75 285.0 276 58.0
CsaV3_7G022840 Cucumis sativus L. HOM05D006271 ORTHO05D008237 3.0e-74 283.1 378 48.9
CSS0050408 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 8.6e-74 281.6 293 56.7
arahy.Tifrunner.gnm1.ann1.0DE1FL Arachis hypogaea HOM05D006271 ORTHO05D008237 1.1e-73 281.2 292 53.4
HanXRQChr08g0228551 Helianthus annuus HOM05D006271 ORTHO05D008237 1.1e-73 281.2 298 55.4
PGSC0003DMG400030380 Solanum tuberosum HOM05D006271 ORTHO05D008237 1.1e-73 281.2 306 52.3
ClCG08G003170 Citrullus lanatus HOM05D006271 ORTHO05D008237 1.5e-73 280.8 291 56.7
Sopen06g033780 Solanum pennellii HOM05D006271 ORTHO05D008237 1.9e-73 280.4 360 51.7
Eucgr.K01366 Eucalyptus grandis HOM05D006271 ORTHO05D008237 2.5e-73 280.0 288 55.6
DCAR_018792 Daucus carota HOM05D006271 ORTHO05D008237 1.6e-72 277.3 284 54.9
Glyma.19G024000 Glycine max HOM05D006271 ORTHO05D008237 3.6e-72 276.2 357 51.5
Ca_26670_v3 Cicer arietinum L. HOM05D006271 ORTHO05D008237 4.7e-72 275.8 284 54.9
Psat6g224880 Pisum sativum HOM05D006271 ORTHO05D008237 4.7e-72 275.8 283 56.2
THA.LOC104800763 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 2.3e-71 273.5 290 54.1
Lsat_1_v5_gn_9_14460 Lactuca sativa HOM05D006271 ORTHO05D008237 3.1e-71 273.1 291 55.3
Medtr7g033700 Medicago truncatula HOM05D006271 ORTHO05D008237 3.1e-71 273.1 367 47.4
Aqoxy4G02154 Aquilegia oxysepala HOM05D006271 ORTHO05D008237 4.0e-71 272.7 290 54.8
arahy.Tifrunner.gnm1.ann1.4PY88X Arachis hypogaea HOM05D006271 ORTHO05D008237 6.8e-71 271.9 370 50.8
Oeu032478.1 Olea europaea HOM05D006271 ORTHO05D008237 6.8e-71 271.9 304 52.0
Cc01_g15040 Coffea canephora HOM05D006271 ORTHO05D008237 1.2e-70 271.2 369 47.2
Rhsim13G0062500 Rhododendron simsii HOM05D006271 ORTHO05D008237 3.4e-70 269.6 286 54.9
AUR62036230 Chenopodium quinoa HOM05D006271 ORTHO05D008237 4.4e-70 269.2 245 62.9
TWI79G1094 Tripterygium wilfordii HOM05D006271 ORTHO05D008237 9.8e-70 268.1 367 49.6
A05p15180 Brassica napus HOM05D006271 ORTHO05D008237 1.3e-69 267.7 291 54.3
Thhalv10016851m.g Eutrema salsugineum HOM05D006271 ORTHO05D008237 2.9e-69 266.5 289 54.3
CANSAT11G2184 Cannabis sativa HOM05D006271 ORTHO05D008237 3.7e-69 266.2 360 53.9
CSS0007493 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 4.9e-69 265.8 279 57.0
Prupe.6G045300 Prunus persica HOM05D006271 ORTHO05D008237 6.4e-69 265.4 360 53.1
Sp4g12860 Schrenkiella parvula HOM05D006271 ORTHO05D008237 1.1e-68 264.6 355 51.3
BraA05t20437Z Brassica rapa HOM05D006271 ORTHO05D008237 1.4e-68 264.2 297 53.5
Duzib168G1576 Durio zibethinus HOM05D006271 ORTHO05D008237 2.4e-68 263.5 379 52.2
FAN13G0829 Fragaria x ananassa HOM05D006271 ORTHO05D008237 3.2e-68 263.1 287 54.0
CARHR123600 Cardamine hirsuta HOM05D006271 ORTHO05D008237 9.2e-68 261.5 294 53.4
FAN18G4385 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.2e-67 261.2 287 53.7
VMungo0464G0054 Vigna mungo HOM05D006271 ORTHO05D008237 1.2e-67 261.2 274 53.6
Carub.0008s0813 Capsella rubella HOM05D006271 ORTHO05D008237 3.5e-67 259.6 294 53.7
Aa31LG5G6440 Aethionema arabicum HOM05D006271 ORTHO05D008237 6.0e-67 258.8 352 52.6
COL.COLO4_11178 Corchorus olitorius HOM05D006271 ORTHO05D008237 7.8e-67 258.5 356 53.4
PGR004G1333 Punica granatum HOM05D006271 ORTHO05D008237 1.0e-66 258.1 278 55.4
BcaB02g10312 Brassica carinata HOM05D006271 ORTHO05D008237 1.3e-66 257.7 279 53.4
Thecc.09G360000 Theobroma cacao HOM05D006271 ORTHO05D008237 1.3e-66 257.7 365 49.0
FAN04G1993 Fragaria x ananassa HOM05D006271 ORTHO05D008237 6.6e-66 255.4 316 50.3
Potri.019G126500 Populus trichocarpa HOM05D006271 ORTHO05D008237 2.5e-65 253.4 301 51.2
Medtr8g063090 Medicago truncatula HOM05D006271 ORTHO05D008237 5.6e-65 252.3 359 51.0
Peaxi162Scf00390g00528 Petunia axillaris HOM05D006271 ORTHO05D008237 5.6e-65 252.3 287 51.2
PSO170G5827 Papaver somniferum HOM05D006271 ORTHO05D008237 7.3e-65 251.9 290 51.0
Manes.12G056300 Manihot esculenta HOM05D006271 ORTHO05D008237 2.8e-64 250.0 350 50.3
Sed0013584 Sechium edule HOM05D006271 ORTHO05D008237 2.8e-64 250.0 283 54.4
ECA247G1693 Erigeron canadensis HOM05D006271 ORTHO05D008237 3.6e-64 249.6 275 53.5
CSS0039557 Camellia sinensis var. sinensis HOM05D006271 ORTHO05D008237 8.1e-64 248.4 357 48.7
PSO017G5241 Papaver somniferum HOM05D006271 ORTHO05D008237 8.1e-64 248.4 294 51.0
Ah.07g202380 Amaranthus hybridus HOM05D006271 ORTHO05D008237 1.1e-63 248.1 287 55.7
AT2G30280 Arabidopsis thaliana HOM05D006271 ORTHO05D008237 1.8e-63 247.3 290 51.4
Lalb_Chr22g0360771 Lupinus albus HOM05D006271 ORTHO05D008237 1.8e-63 247.3 283 52.7
Phvul.008G153700 Phaseolus vulgaris HOM05D006271 ORTHO05D008237 2.3e-63 246.9 270 51.9
QL01p025615 Quercus lobata HOM05D006271 ORTHO05D008237 5.2e-63 245.7 496 36.9
Sabra19G0124300 Salix brachista HOM05D006271 ORTHO05D008237 1.5e-62 244.2 378 44.2
AL4G25130 Arabidopsis lyrata HOM05D006271 ORTHO05D008237 2.6e-62 243.4 294 51.0
MBI15_g26246_MAGBIO Magnolia biondii HOM05D006271 ORTHO05D008237 2.6e-62 243.4 284 52.1
unitig_60.g25562 Utricularia gibba HOM05D006271 ORTHO05D008237 1.7e-61 240.7 271 48.0
Sabra19G0130300 Salix brachista HOM05D006271 ORTHO05D008237 2.9e-61 240.0 371 45.8
BcaC02g11116 Brassica carinata HOM05D006271 ORTHO05D008237 1.4e-60 237.7 271 52.8
TPR.G1139 Trifolium pratense HOM05D006271 ORTHO05D008237 1.4e-60 237.7 260 52.3
Dinv12252 Davidia involucrata HOM05D006271 ORTHO05D008237 4.1e-60 236.1 225 57.8
Lj1g0015465 Lotus japonicus HOM05D006271 ORTHO05D008237 5.4e-60 235.7 358 47.5
SalBow2G1290 Salvia bowleyana HOM05D006271 ORTHO05D008237 5.4e-60 235.7 331 45.9
BolC4t23562H Brassica oleracea HOM05D006271 ORTHO05D008237 1.2e-59 234.6 283 50.9
Gohir.D03G144000 Gossypium hirsutum HOM05D006271 ORTHO05D008237 1.2e-59 234.6 272 54.0
FAN08G2456 Fragaria x ananassa HOM05D006271 ORTHO05D008237 1.6e-59 234.2 384 48.2
Migut.N00750 Erythranthe guttata HOM05D006271 ORTHO05D008237 4.6e-59 232.6 291 49.5
SGA_v2.0_scaffold77G25374 Striga asiatica HOM05D006271 ORTHO05D008237 6.0e-59 232.3 248 51.6
Gohir.A03G024500 Gossypium hirsutum HOM05D006271 ORTHO05D008237 2.3e-58 230.3 269 52.8
Gorai.003G151300 Gossypium raimondii HOM05D006271 ORTHO05D008237 3.9e-58 229.6 364 49.7
Actinidia23186 Actinidia chinensis HOM05D006271 ORTHO05D008237 2.5e-57 226.9 345 51.3
Medtr7g033685 Medicago truncatula HOM05D006271 ORTHO05D008237 1.4e-55 221.1 269 48.7
vmacro02904 Vaccinium macrocarpon HOM05D006271 ORTHO05D008237 6.8e-55 218.8 285 48.1
THA.LOC104800777 Tarenaya hassleriana HOM05D006271 ORTHO05D008237 4.4e-54 216.1 277 48.0
ATR0681G348 Amborella trichopoda HOM05D006727 ORTHO05D008408 2.2e-53 213.8 294 48.0
FvH4_5g27270 Fragaria vesca HOM05D006271 ORTHO05D008237 6.4e-53 212.2 220 55.0
Os12g0110300 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 1.1e-49 201.4 298 46.0
C04p20240 Brassica napus HOM05D006271 ORTHO05D008237 1.5e-49 201.1 238 50.8
Os11g0110066 Oryza sativa ssp. japonica HOM05D006271 ORTHO05D008237 9.6e-49 198.4 290 45.2
Dinv44551 Davidia involucrata HOM05D006271 ORTHO05D008237 1.1e-47 194.9 169 59.8
PSO339G2991 Papaver somniferum HOM05D006271 ORTHO05D008237 3.1e-47 193.4 345 40.0
HPP92_015428 Vanilla planifolia HOM05D006271 ORTHO05D008237 1.3e-45 188.0 349 38.7
Lj1g0018317 Lotus japonicus HOM05D006271 ORTHO05D008237 8.4e-45 185.3 347 37.5
QL01p025639 Quercus lobata HOM05D006271 ORTHO05D008237 5.4e-44 182.6 157 61.8
Nn2g11075 Nelumbo nucifera HOM05D006271 ORTHO05D008237 6.0e-43 179.1 263 42.6
TPR.G1080 Trifolium pratense HOM05D006271 ORTHO05D008237 8.1e-40 168.7 256 43.8
CDE04G1879 Ceratophyllum demersum HOM05D006271 ORTHO05D008237 8.4e-37 158.7 226 44.2
SEGI_17267 Sequoiadendron giganteum HOM05D006271 ORTHO05D008237 2.7e-35 153.7 261 39.5
unitig_60.g25741 Utricularia gibba HOM05D006271 ORTHO05D008237 6.7e-34 149.1 246 36.6
AagrBONN_evm.TU.Sc2ySwM_344.4002 Anthoceros agrestis HOM05D006271 ORTHO05D008237 3.8e-29 133.3 286 36.0
Ah.07g202370 Amaranthus hybridus HOM05D006271 ORTHO05D000898 3.0e-26 123.6 90 74.4
Pp3c12_13690 Physcomitrium patens HOM05D006271 ORTHO05D008237 1.3e-24 118.2 298 33.9
Zm00001eb404980 Zea mays HOM05D006271 ORTHO05D008237 2.8e-24 117.1 192 42.7
PSO384G0354 Papaver somniferum HOM05D006271 ORTHO05D008237 1.7e-21 107.8 108 58.3
SHI19233 Sapria himalayana HOM05D006271 ORTHO05D008237 6.7e-18 95.9 165 40.0
PSO017G3993 Papaver somniferum HOM05D006271 ORTHO05D008237 2.4e-15 87.4 219 32.9
Mapoly0055s0007 Marchantia polymorpha HOM05D006271 ORTHO05D008237 1.5e-14 84.7 286 29.7
PSO170G2099 Papaver somniferum HOM05D006271 ORTHO05D008237 2.6e-14 84.0 242 31.4
BcaB06g28355 Brassica carinata HOM05D006271 ORTHO05D008237 7.9e-11 72.4 103 47.6
BolC4t27428H Brassica oleracea HOM05D006271 ORTHO05D023853 1.9e-09 67.8 221 35.3
C04p59170 Brassica napus HOM05D006271 ORTHO05D023853 4.3e-09 66.6 225 34.7


User provided reference genes

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