Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc21g0004230 Simmondsia chinensis HOM05D003918 ORTHO05D004494 4.5e-79 297.7 138 100.0
Sc21g0004490 Simmondsia chinensis HOM05D003918 ORTHO05D004494 1.9e-45 186.0 88 98.9
Cc01_g10200 Coffea canephora HOM05D003918 ORTHO05D004494 7.2e-45 184.1 88 97.7
Gohir.A05G085800 Gossypium hirsutum HOM05D003918 ORTHO05D004494 6.1e-44 181.0 88 95.5
Gohir.D05G087700 Gossypium hirsutum HOM05D003918 ORTHO05D004494 6.1e-44 181.0 88 95.5
Gorai.009G089700 Gossypium raimondii HOM05D003918 ORTHO05D004494 6.1e-44 181.0 88 95.5
Thecc.09G297000 Theobroma cacao HOM05D003918 ORTHO05D004494 6.1e-44 181.0 88 95.5
CiPaw.13G144800 Carya illinoinensis HOM05D003918 ORTHO05D004494 8.0e-44 180.6 88 95.5
Haze_03482 Corylus avellana HOM05D003918 ORTHO05D004494 8.0e-44 180.6 88 95.5
Hma1.2p1_0051F.1_g029570 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 8.0e-44 180.6 88 95.5
Medtr4g057040 Medicago truncatula HOM05D003918 ORTHO05D004494 8.0e-44 180.6 88 94.3
PGR119G0927 Punica granatum HOM05D003918 ORTHO05D004494 1.0e-43 180.3 88 94.3
GSVIVG01031454001 Vitis vinifera HOM05D003918 ORTHO05D004494 1.0e-43 180.3 88 95.5
Eucgr.J00392 Eucalyptus grandis HOM05D003918 ORTHO05D004494 1.4e-43 179.9 88 94.3
Manes.04G012300 Manihot esculenta HOM05D003918 ORTHO05D004494 1.4e-43 179.9 88 94.3
Nitab4.5_0000173g0230 Nicotiana tabacum HOM05D003918 ORTHO05D004494 1.4e-43 179.9 88 94.3
QL01p014884 Quercus lobata HOM05D003918 ORTHO05D004494 1.4e-43 179.9 88 94.3
Glyma.11G192100 Glycine max HOM05D003918 ORTHO05D004494 1.8e-43 179.5 88 94.3
Glyma.12G082300 Glycine max HOM05D003918 ORTHO05D004494 1.8e-43 179.5 88 94.3
Lj3g0024072 Lotus japonicus HOM05D003918 ORTHO05D004494 1.8e-43 179.5 88 94.3
Phvul.011G086900 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 1.8e-43 179.5 88 94.3
CiPaw.14G106800 Carya illinoinensis HOM05D003918 ORTHO05D004494 2.3e-43 179.1 88 94.3
COL.COLO4_19215 Corchorus olitorius HOM05D003918 ORTHO05D004494 2.3e-43 179.1 88 95.5
Gohir.A07G105200 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.3e-43 179.1 88 94.3
Gohir.D07G109300 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.3e-43 179.1 88 94.3
Gorai.001G117400 Gossypium raimondii HOM05D003918 ORTHO05D004494 2.3e-43 179.1 88 94.3
TWI79G0503 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.3e-43 179.1 88 94.3
TWI79G0939 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 2.3e-43 179.1 88 94.3
CAN.G546.56 Capsicum annuum HOM05D003918 ORTHO05D004494 3.0e-43 178.7 88 93.2
ClCG01G013880 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.0e-43 178.7 88 94.3
Duzib168G2331 Durio zibethinus HOM05D003918 ORTHO05D004494 3.0e-43 178.7 88 95.5
Ca_10762_v3 Cicer arietinum L. HOM05D003918 ORTHO05D004494 4.0e-43 178.3 88 93.2
Ciclev10029696m.g Citrus clementina HOM05D003918 ORTHO05D004494 4.0e-43 178.3 88 93.2
Peaxi162Scf00983g00019 Petunia axillaris HOM05D003918 ORTHO05D004494 5.2e-43 177.9 88 93.2
Oeu008363.1 Olea europaea HOM05D003918 ORTHO05D004494 6.8e-43 177.6 88 92.0
TWI31G0950 Tripterygium wilfordii HOM05D003918 ORTHO05D004494 6.8e-43 177.6 88 94.3
Sopen11g026220 Solanum pennellii HOM05D003918 ORTHO05D004494 8.8e-43 177.2 88 93.2
PGSC0003DMG402000458 Solanum tuberosum HOM05D003918 ORTHO05D004494 8.8e-43 177.2 88 93.2
Lj1A213T32 Lonicera japonica HOM05D003918 ORTHO05D004494 1.2e-42 176.8 88 92.0
MD03G1128000 Malus domestica HOM05D003918 ORTHO05D004494 1.2e-42 176.8 88 94.3
MD11G1149400 Malus domestica HOM05D003918 ORTHO05D004494 1.2e-42 176.8 88 94.3
Lalb_Chr01g0004631 Lupinus albus HOM05D003918 ORTHO05D004494 1.5e-42 176.4 88 93.2
Psat0ss2518g0280 Pisum sativum HOM05D003918 ORTHO05D004494 1.5e-42 176.4 88 92.0
TAR633G2652 Trochodendron aralioides HOM05D003918 ORTHO05D004494 2.0e-42 176.0 88 93.2
CSS0003214 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.6e-42 175.6 88 93.2
CSS0049251 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 2.6e-42 175.6 88 93.2
CsaV3_1G014150 Cucumis sativus L. HOM05D003918 ORTHO05D004494 2.6e-42 175.6 88 93.2
ClCG02G021690 Citrullus lanatus HOM05D003918 ORTHO05D004494 3.4e-42 175.3 87 94.3
Dinv16240 Davidia involucrata HOM05D003918 ORTHO05D004494 3.4e-42 175.3 86 95.3
Hund00834 Selenicereus undatus HOM05D003918 ORTHO05D004494 3.4e-42 175.3 104 85.6
unitig_899.g14962 Utricularia gibba HOM05D003918 ORTHO05D004494 3.4e-42 175.3 88 93.2
Aqoxy1G01058 Aquilegia oxysepala HOM05D003918 ORTHO05D004494 4.4e-42 174.9 88 93.2
CSS0025262 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.7e-42 174.5 81 100.0
CSS0028017 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 5.7e-42 174.5 81 100.0
Rhsim01G0210200 Rhododendron simsii HOM05D003918 ORTHO05D004494 5.7e-42 174.5 88 92.0
Sed0005005 Sechium edule HOM05D003918 ORTHO05D004494 5.7e-42 174.5 86 94.2
FvH4_3g30520 Fragaria vesca HOM05D003918 ORTHO05D004494 7.5e-42 174.1 88 94.3
FAN11G2739 Fragaria x ananassa HOM05D003918 ORTHO05D004494 7.5e-42 174.1 88 94.3
FAN21G0274 Fragaria x ananassa HOM05D003918 ORTHO05D004494 7.5e-42 174.1 88 94.3
TAR369G0366 Trochodendron aralioides HOM05D003918 ORTHO05D004494 7.5e-42 174.1 88 90.9
CAN.G246.3 Capsicum annuum HOM05D003918 ORTHO05D004494 9.8e-42 173.7 88 89.8
AUR62041324 Chenopodium quinoa HOM05D003918 ORTHO05D004494 9.8e-42 173.7 88 93.2
DCAR_018757 Daucus carota HOM05D003918 ORTHO05D004494 9.8e-42 173.7 88 92.0
Aa31LG5G8120 Aethionema arabicum HOM05D003918 ORTHO05D004494 1.3e-41 173.3 88 93.2
AL4G22250 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 1.3e-41 173.3 88 93.2
MELO3C026958.2 Cucumis melo HOM05D003918 ORTHO05D004494 1.3e-41 173.3 87 92.0
Dinv29385 Davidia involucrata HOM05D003918 ORTHO05D004494 1.3e-41 173.3 83 97.6
Manes.11G152900 Manihot esculenta HOM05D003918 ORTHO05D004494 1.3e-41 173.3 81 98.8
RcHm_v2.0_Chr5g0056481 Rosa chinensis HOM05D003918 ORTHO05D004494 1.3e-41 173.3 81 98.8
TAR623G0966 Trochodendron aralioides HOM05D003918 ORTHO05D004494 1.3e-41 173.3 83 97.6
HPP92_026243 Vanilla planifolia HOM05D003918 ORTHO05D004494 1.3e-41 173.3 81 98.8
Ah.01g016010 Amaranthus hybridus HOM05D003918 ORTHO05D004494 1.7e-41 172.9 88 90.9
AT2G27960 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 1.7e-41 172.9 88 92.0
Actinidia07191 Actinidia chinensis HOM05D001217 ORTHO05D004494 2.8e-41 172.2 81 98.8
Prupe.6G113800 Prunus persica HOM05D003918 ORTHO05D004494 2.8e-41 172.2 88 94.3
PGSC0003DMG400018822 Solanum tuberosum HOM05D003918 ORTHO05D004494 2.8e-41 172.2 88 92.0
Nn2g13876 Nelumbo nucifera HOM05D003918 ORTHO05D004494 3.7e-41 171.8 88 89.8
Sed0024739 Sechium edule HOM05D003918 ORTHO05D004494 3.7e-41 171.8 88 93.2
Zm00001eb402980 Zea mays HOM05D003918 ORTHO05D004494 3.7e-41 171.8 83 96.4
CANSAT64G2716 Cannabis sativa HOM05D003918 ORTHO05D004494 4.8e-41 171.4 81 98.8
Lsat_1_v5_gn_1_64981 Lactuca sativa HOM05D003918 ORTHO05D004494 4.8e-41 171.4 90 90.0
vmacro03250 Vaccinium macrocarpon HOM05D003918 ORTHO05D004494 4.8e-41 171.4 81 97.5
BcaB03g11846 Brassica carinata HOM05D003918 ORTHO05D004494 6.3e-41 171.0 88 89.8
Haze_23526 Corylus avellana HOM05D001217 ORTHO05D001097 6.3e-41 171.0 81 97.5
Nitab4.5_0003880g0020 Nicotiana tabacum HOM05D003918 ORTHO05D004494 6.3e-41 171.0 86 91.9
CARHR120670 Cardamine hirsuta HOM05D003918 ORTHO05D004494 8.3e-41 170.6 88 90.9
FAN25G0673 Fragaria x ananassa HOM05D003918 ORTHO05D004494 8.3e-41 170.6 88 93.2
HanXRQChr11g0346091 Helianthus annuus HOM05D003918 ORTHO05D004494 8.3e-41 170.6 90 90.0
Oeu040442.1 Olea europaea HOM05D003918 ORTHO05D004494 8.3e-41 170.6 88 88.6
Sp4g10790 Schrenkiella parvula HOM05D003918 ORTHO05D004494 8.3e-41 170.6 88 92.0
Carub.0004s0872 Capsella rubella HOM05D003918 ORTHO05D004494 1.1e-40 170.2 88 92.0
Cpa.g.sc47.8 Carica papaya HOM05D003918 ORTHO05D004494 1.1e-40 170.2 88 88.6
PSO339G4781 Papaver somniferum HOM05D003918 ORTHO05D004494 1.1e-40 170.2 83 95.2
EL10Ac9g21015 Beta vulgaris HOM05D003918 ORTHO05D004494 1.4e-40 169.9 88 93.2
ECA233G3711 Erigeron canadensis HOM05D003918 ORTHO05D004494 1.8e-40 169.5 88 88.6
Oeu007724.1 Olea europaea HOM05D003918 ORTHO05D004494 2.4e-40 169.1 81 97.5
Thhalv10017487m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 3.1e-40 168.7 88 92.0
Oeu007309.2 Olea europaea HOM05D003918 ORTHO05D004494 3.1e-40 168.7 90 88.9
Potri.009G004000 Populus trichocarpa HOM05D003918 ORTHO05D004494 3.1e-40 168.7 80 96.2
HanXRQChr01g0019451 Helianthus annuus HOM05D003918 ORTHO05D004494 4.1e-40 168.3 90 88.9
Oeu000602.1 Olea europaea HOM05D003918 ORTHO05D004494 4.1e-40 168.3 88 89.8
Rhsim13G0101600 Rhododendron simsii HOM05D003918 ORTHO05D004494 4.1e-40 168.3 81 96.3
A08p17020 Brassica napus HOM05D003918 ORTHO05D004494 5.4e-40 167.9 88 87.5
Sabra09G0001700 Salix brachista HOM05D003918 ORTHO05D004494 5.4e-40 167.9 80 96.2
FAN16G1510 Fragaria x ananassa HOM05D003918 ORTHO05D004494 7.0e-40 167.5 94 88.3
SalBow6G1569 Salvia bowleyana HOM05D003918 ORTHO05D004494 7.0e-40 167.5 81 95.1
THA.LOC104815736 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 7.0e-40 167.5 85 89.4
BcaC01g00919 Brassica carinata HOM05D003918 ORTHO05D004494 9.1e-40 167.2 88 89.8
CDE09G0194 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 9.1e-40 167.2 87 90.8
ECA248G3596 Erigeron canadensis HOM05D003918 ORTHO05D004494 9.1e-40 167.2 80 96.2
MBI17_g16530_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 9.1e-40 167.2 79 97.5
BraA08t33664Z Brassica rapa HOM05D003918 ORTHO05D004494 2.0e-39 166.0 88 86.4
Eucgr.B03920 Eucalyptus grandis HOM05D003918 ORTHO05D004494 2.0e-39 166.0 86 89.5
MELO3C004864.2 Cucumis melo HOM05D003918 ORTHO05D004494 2.7e-39 165.6 97 83.5
THA.LOC104826394 Tarenaya hassleriana HOM05D003918 ORTHO05D004494 2.7e-39 165.6 88 86.4
Migut.D02301 Erythranthe guttata HOM05D003918 ORTHO05D004494 4.5e-39 164.9 81 95.1
DCAR_015501 Daucus carota HOM05D003918 ORTHO05D004494 5.9e-39 164.5 81 95.1
Thhalv10017678m.g Eutrema salsugineum HOM05D003918 ORTHO05D004494 1.0e-38 163.7 88 89.8
C03p85930 Brassica napus HOM05D003918 ORTHO05D004494 1.7e-38 162.9 90 85.6
ATR0043G026 Amborella trichopoda HOM05D003918 ORTHO05D004494 2.2e-38 162.5 83 89.2
Hma1.2p1_0772F.1_g215980 Hydrangea macrophylla HOM05D003918 ORTHO05D004494 2.2e-38 162.5 99 81.8
Lsat_1_v5_gn_6_43541 Lactuca sativa HOM05D003918 ORTHO05D004494 2.2e-38 162.5 81 91.4
Lalb_Chr03g0027731 Lupinus albus HOM05D003918 ORTHO05D004494 2.9e-38 162.2 81 93.8
Os03g0146300 Oryza sativa ssp. japonica HOM05D003918 ORTHO05D004494 2.9e-38 162.2 75 98.7
AL4G22230 Arabidopsis lyrata HOM05D003918 ORTHO05D004494 3.8e-38 161.8 83 88.0
AT2G27970 Arabidopsis thaliana HOM05D003918 ORTHO05D004494 3.8e-38 161.8 83 88.0
PSO801G0480 Papaver somniferum HOM05D003918 ORTHO05D004494 3.8e-38 161.8 80 90.0
Carub.0004s0873 Capsella rubella HOM05D003918 ORTHO05D004494 8.5e-38 160.6 77 93.5
Potri.004G217500 Populus trichocarpa HOM05D003918 ORTHO05D004494 1.5e-37 159.8 78 94.9
Zm00001eb003750 Zea mays HOM05D003918 ORTHO05D004494 1.9e-37 159.5 88 83.0
PGR102G3373 Punica granatum HOM05D003918 ORTHO05D004494 2.5e-37 159.1 76 96.1
CARHR120680 Cardamine hirsuta HOM05D003918 ORTHO05D004494 3.2e-37 158.7 83 86.7
PSO339G2710 Papaver somniferum HOM05D003918 ORTHO05D004494 7.2e-37 157.5 76 92.1
SEGI_17224 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 7.2e-37 157.5 78 91.0
Lalb_Chr19g0136871 Lupinus albus HOM05D003918 ORTHO05D004494 1.2e-36 156.8 75 96.0
Pp3c14_11680 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.7e-36 155.6 83 86.7
Pp3c2_6200 Physcomitrium patens HOM05D003918 ORTHO05D004494 2.7e-36 155.6 83 86.7
SMO116G0276 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 2.7e-36 155.6 83 84.3
SEGI_19027 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 2.7e-36 155.6 78 88.5
Mapoly0001s0011 Marchantia polymorpha HOM05D003918 ORTHO05D004494 1.0e-35 153.7 86 84.9
BcaB06g28178 Brassica carinata HOM05D003918 ORTHO05D004494 1.8e-35 152.9 74 91.9
Glyma.12G083700 Glycine max HOM05D003918 ORTHO05D004494 1.8e-35 152.9 82 90.2
SalBow3G4245 Salvia bowleyana HOM05D003918 ORTHO05D004494 5.2e-35 151.4 77 90.9
BcaC02g08219 Brassica carinata HOM05D003918 ORTHO05D004494 2.6e-34 149.1 74 89.2
A04p21230 Brassica napus HOM05D003918 ORTHO05D004494 2.6e-34 149.1 74 89.2
C04p57080 Brassica napus HOM05D003918 ORTHO05D004494 2.6e-34 149.1 74 89.2
BolC4t27242H Brassica oleracea HOM05D003918 ORTHO05D004494 2.6e-34 149.1 74 89.2
Phvul.011G088400 Phaseolus vulgaris HOM05D003918 ORTHO05D004494 2.6e-34 149.1 81 82.7
PRCOL_00005401 Prasinoderma coloniale HOM05D003918 ORTHO05D004494 4.1e-32 141.7 80 77.5
Cre03.g180350 Chlamydomonas reinhardtii HOM05D003918 ORTHO05D004494 7.0e-32 141.0 70 88.6
CDE02G4651 Ceratophyllum demersum HOM05D003918 ORTHO05D004494 3.5e-31 138.7 87 82.8
CsaV3_6G014430 Cucumis sativus L. HOM05D003918 ORTHO05D004494 1.9e-29 132.9 70 87.1
MCO11G605 Micromonas commoda HOM05D003918 ORTHO05D004494 1.9e-29 132.9 68 85.3
MBI16_g13165_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.5e-29 132.5 91 70.3
SMO367G0337 Selaginella moellendorffii HOM05D003918 ORTHO05D004494 3.6e-28 128.6 69 79.7
Zm00001eb012500 Zea mays HOM05D003918 ORTHO05D004494 1.0e-27 127.1 65 90.8
SEGI_02290 Sequoiadendron giganteum HOM05D003918 ORTHO05D004494 1.8e-27 126.3 64 89.1
CBR_g2791 Chara braunii HOM05D003918 ORTHO05D004494 2.2e-25 119.4 60 86.7
MBI11_g44590_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 5.4e-24 114.8 63 82.5
Actinidia24153 Actinidia chinensis HOM05D003918 ORTHO05D004494 4.3e-21 105.1 55 90.9
BcaB02g10127 Brassica carinata HOM05D003918 ORTHO05D004494 9.5e-21 104.0 77 62.3
TPR.G31695 Trifolium pratense HOM05D003918 ORTHO05D004494 9.5e-21 104.0 48 100.0
Thecc.08G095400 Theobroma cacao HOM05D003918 ORTHO05D004494 4.9e-17 91.7 66 68.2
Actinidia03687 Actinidia chinensis HOM05D003918 ORTHO05D004494 8.3e-17 90.9 44 93.2
ATR0760G002 Amborella trichopoda HOM05D003918 ORTHO05D004494 9.2e-16 87.4 48 85.4
Zm00001eb191010 Zea mays HOM05D003918 ORTHO05D004494 6.0e-15 84.7 88 52.3
AagrBONN_evm.TU.Sc2ySwM_117.701 Anthoceros agrestis HOM05D005424 ORTHO05D006726 3.9e-14 82.0 46 80.4
Nn2g10486 Nelumbo nucifera HOM05D003918 ORTHO05D004494 8.6e-14 80.9 38 92.1
CSS0021242 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 1.1e-13 80.5 67 64.2
Nn6g35195 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.5e-13 80.1 37 100.0
Migut.N02540 Erythranthe guttata HOM05D003918 ORTHO05D004494 2.5e-13 79.3 47 83.0
SGA_v2.0_scaffold50G18575 Striga asiatica HOM05D003918 ORTHO05D004494 5.6e-13 78.2 53 73.6
BcaC05g28675 Brassica carinata HOM05D003918 ORTHO05D004494 9.5e-13 77.4 39 82.1
BolC5t33525H Brassica oleracea HOM05D003918 ORTHO05D004494 9.5e-13 77.4 39 82.1
CSS0049200 Camellia sinensis var. sinensis HOM05D003918 ORTHO05D004494 9.5e-13 77.4 59 66.1
Ah.03g143830 Amaranthus hybridus HOM05D003918 ORTHO05D004494 3.1e-11 72.4 38 92.1
Gohir.A02G090001 Gossypium hirsutum HOM05D003918 ORTHO05D004494 2.0e-10 69.7 38 86.8
Nn1g02037 Nelumbo nucifera HOM05D003918 ORTHO05D004494 9.8e-10 67.4 51 60.8
Nn4g23314 Nelumbo nucifera HOM05D003918 ORTHO05D004494 1.4e-08 63.5 29 89.7
Ah.09g226860 Amaranthus hybridus HOM05D003918 ORTHO05D004494 4.1e-08 62.0 38 84.2
MBI10_g35299_MAGBIO Magnolia biondii HOM05D003918 ORTHO05D004494 2.3e-06 56.2 29 86.2


User provided reference genes

Program Settings