Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.2e-101 373.2 193 100.0
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.6e-82 309.7 190 86.3
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.3e-20 104.0 119 52.1
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 3.9e-20 102.4 102 55.9
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 8.6e-20 101.3 102 55.9
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 3.3e-19 99.4 126 46.0
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 9.5e-19 97.8 115 50.4
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 2.8e-18 96.3 116 46.6
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 3.6e-18 95.9 119 48.7
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 4.7e-18 95.5 96 52.1
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 6.2e-18 95.1 113 47.8
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 6.2e-18 95.1 107 51.4
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 6.2e-18 95.1 95 55.8
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.1e-17 94.4 112 48.2
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 1.1e-17 94.4 192 41.1
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 1.4e-17 94.0 119 44.5
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.4e-17 94.0 102 52.0
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 1.8e-17 93.6 115 50.4
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.3e-17 93.2 98 53.1
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 6.8e-17 91.7 118 48.3
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 6.8e-17 91.7 110 50.0
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 6.8e-17 91.7 121 43.8
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 8.9e-17 91.3 131 44.3
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 8.9e-17 91.3 112 44.6
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 8.9e-17 91.3 98 53.1
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 8.9e-17 91.3 131 45.0
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.5e-16 90.5 102 52.0
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 2.0e-16 90.1 98 52.0
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 2.0e-16 90.1 98 52.0
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 2.0e-16 90.1 112 46.4
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 2.6e-16 89.7 125 44.0
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 2.6e-16 89.7 97 53.6
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 2.6e-16 89.7 113 46.0
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.6e-16 89.7 95 52.6
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 3.4e-16 89.4 98 52.0
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.4e-16 89.4 95 52.6
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 3.4e-16 89.4 95 52.6
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 3.4e-16 89.4 96 53.1
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 4.4e-16 89.0 106 46.2
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.8e-16 88.6 98 51.0
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 7.5e-16 88.2 96 52.1
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 7.5e-16 88.2 112 44.6
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 7.5e-16 88.2 95 49.5
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 1.3e-15 87.4 122 44.3
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 1.7e-15 87.0 125 44.0
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 1.7e-15 87.0 144 39.6
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 2.2e-15 86.7 114 44.7
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 2.2e-15 86.7 121 44.6
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 3.7e-15 85.9 102 48.0
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.4e-14 83.2 119 43.7
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 3.2e-14 82.8 99 44.4
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 5.4e-14 82.0 106 43.4
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 5.4e-14 82.0 100 46.0
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 9.2e-14 81.3 112 42.9
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 9.2e-14 81.3 107 43.0
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.2e-13 80.9 123 39.8
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 1.2e-13 80.9 101 46.5
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 1.2e-13 80.9 112 42.0
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 1.6e-13 80.5 100 52.0
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 2.7e-13 79.7 114 40.4
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 3.5e-13 79.3 94 45.7
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 3.5e-13 79.3 94 46.8
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 4.6e-13 79.0 94 46.8
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.7e-12 77.0 118 39.0
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 1.7e-12 77.0 120 43.3
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 2.3e-12 76.6 109 46.8
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 3.0e-12 76.3 99 47.5
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 3.0e-12 76.3 99 45.5
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 3.0e-12 76.3 99 44.4
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 5.1e-12 75.5 94 44.7
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 5.1e-12 75.5 100 50.0
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 5.1e-12 75.5 101 46.5
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 6.6e-12 75.1 119 37.8
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 6.6e-12 75.1 121 36.4
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 6.6e-12 75.1 121 36.4
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 6.6e-12 75.1 121 36.4
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 6.6e-12 75.1 94 45.7
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 8.6e-12 74.7 121 41.3
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 8.6e-12 74.7 87 52.9
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 1.1e-11 74.3 138 38.4
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 1.1e-11 74.3 138 38.4
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.5e-11 73.9 121 38.0
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 1.5e-11 73.9 121 38.0
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.5e-11 73.9 121 38.0
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.9e-11 73.6 93 45.2
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 7.3e-11 71.6 96 44.8
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 7.3e-11 71.6 96 44.8
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 9.5e-11 71.2 118 39.8
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 2.8e-10 69.7 94 41.5
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 2.8e-10 69.7 94 44.7
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.6e-10 69.3 117 42.7
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.6e-10 69.3 117 42.7
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 1.4e-09 67.4 88 50.0
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 3.1e-09 66.2 94 44.7
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 4.0e-09 65.9 105 41.0
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 4.0e-09 65.9 92 40.2
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 8.9e-09 64.7 102 41.2
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 1.2e-08 64.3 93 37.6
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 3.4e-08 62.8 120 36.7
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 3.4e-08 62.8 89 49.4
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 5.8e-08 62.0 108 39.8
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 5.8e-08 62.0 108 39.8
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 1.3e-07 60.8 82 45.1
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 2.2e-07 60.1 64 53.1
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.9e-07 58.9 92 39.1
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 6.4e-07 58.5 92 39.1
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 1.9e-06 57.0 129 31.0
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 2.4e-06 56.6 136 32.4


User provided reference genes

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