Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc20g0002110 Simmondsia chinensis HOM05D006237 ORTHO05D002967 5.6e-195 684.1 351 100.0
AUR62027921 Chenopodium quinoa HOM05D006237 ORTHO05D002967 6.9e-92 341.7 362 57.5
AUR62020779 Chenopodium quinoa HOM05D006237 ORTHO05D002967 2.0e-91 340.1 362 56.6
TWI12G0168 Tripterygium wilfordii HOM05D006237 ORTHO05D002967 1.2e-88 330.9 352 56.5
TAR636G1281 Trochodendron aralioides HOM05D002456 ORTHO05D002967 2.7e-88 329.7 386 53.1
Cpa.g.sc1.394 Carica papaya HOM05D006237 ORTHO05D002967 8.7e-87 324.7 374 52.4
PGR142G0430 Punica granatum HOM05D006237 ORTHO05D002967 3.3e-86 322.8 350 55.4
Actinidia34142 Actinidia chinensis HOM05D006237 ORTHO05D002967 1.3e-85 320.9 316 58.5
Prupe.3G056900 Prunus persica HOM05D006237 ORTHO05D002967 8.1e-85 318.2 349 55.0
Manes.14G023800 Manihot esculenta HOM05D006237 ORTHO05D002967 1.4e-84 317.4 361 55.1
TWI56G0599 Tripterygium wilfordii HOM05D006237 ORTHO05D002967 3.1e-84 316.2 361 54.3
MSTRG.27097 Avicennia marina HOM05D006237 ORTHO05D002967 6.9e-84 315.1 376 51.9
Cfa016275 Carpinus fangiana HOM05D006237 ORTHO05D002967 1.2e-83 314.3 366 50.5
SGA_v2.0_scaffold44G16742 Striga asiatica HOM05D006237 ORTHO05D002967 4.5e-83 312.4 361 54.3
Nn1g09125 Nelumbo nucifera HOM05D006237 ORTHO05D002967 1.0e-82 311.2 377 50.9
RcHm_v2.0_Chr2g0141031 Rosa chinensis HOM05D006237 ORTHO05D002967 1.3e-82 310.8 356 53.4
Nitab4.5_0005550g0040 Nicotiana tabacum HOM05D006237 ORTHO05D002967 1.7e-82 310.5 366 53.8
FAN05G1350 Fragaria x ananassa HOM05D006237 ORTHO05D002967 2.2e-82 310.1 349 52.4
FAN05G1909 Fragaria x ananassa HOM05D006237 ORTHO05D002967 2.2e-82 310.1 349 52.4
Glyma.11G094400 Glycine max HOM05D006237 ORTHO05D002967 2.9e-82 309.7 384 49.2
Nitab4.5_0006974g0010 Nicotiana tabacum HOM05D006237 ORTHO05D002967 4.9e-82 308.9 363 53.2
Potri.012G144700 Populus trichocarpa HOM05D006237 ORTHO05D002967 4.9e-82 308.9 373 51.7
Phvul.011G076300 Phaseolus vulgaris HOM05D006237 ORTHO05D002967 6.5e-82 308.5 378 50.8
Haze_00028 Corylus avellana HOM05D006237 ORTHO05D002967 1.1e-81 307.8 355 52.4
CSS0013329 Camellia sinensis var. sinensis HOM05D006237 ORTHO05D002967 1.4e-81 307.4 274 62.8
TAR629G2491 Trochodendron aralioides HOM05D006237 ORTHO05D002967 2.5e-81 306.6 385 52.5
CiPaw.15G152100 Carya illinoinensis HOM05D006237 ORTHO05D002967 3.2e-81 306.2 353 53.0
VMungo1127G1244 Vigna mungo HOM05D001780 ORTHO05D004373 4.2e-81 305.8 377 49.6
MD15G1412900 Malus domestica HOM05D006237 ORTHO05D002967 7.1e-81 305.1 349 52.1
FAN02G0617 Fragaria x ananassa HOM05D006237 ORTHO05D002967 9.3e-81 304.7 349 51.6
Glyma.12G020800 Glycine max HOM05D006237 ORTHO05D002967 1.2e-80 304.3 381 50.1
Ah.16g108280 Amaranthus hybridus HOM05D006237 ORTHO05D002967 2.1e-80 303.5 353 51.0
CANSAT54G1461 Cannabis sativa HOM05D006237 ORTHO05D002967 3.5e-80 302.8 348 53.2
FAN14G2466 Fragaria x ananassa HOM05D006237 ORTHO05D002967 3.5e-80 302.8 354 52.3
FvH4_6g32580 Fragaria vesca HOM05D006237 ORTHO05D002967 4.6e-80 302.4 354 52.3
DCAR_027497 Daucus carota HOM05D006237 ORTHO05D002967 1.8e-79 300.4 402 49.0
Eucgr.K00287 Eucalyptus grandis HOM05D006237 ORTHO05D002967 1.8e-79 300.4 369 51.5
Sopen10g030770 Solanum pennellii HOM05D006237 ORTHO05D002967 2.3e-79 300.1 350 50.6
CsaV3_5G001160 Cucumis sativus L. HOM05D006237 ORTHO05D002967 3.9e-79 299.3 326 54.3
MBI16_g19591_MAGBIO Magnolia biondii HOM05D006237 ORTHO05D002967 3.9e-79 299.3 368 51.4
GSVIVG01036122001 Vitis vinifera HOM05D006237 ORTHO05D002967 5.1e-79 298.9 357 51.3
Migut.F00315 Erythranthe guttata HOM05D006237 ORTHO05D002967 1.1e-78 297.7 376 51.6
Ca_08896_v3 Cicer arietinum L. HOM05D006237 ORTHO05D002967 1.9e-78 297.0 368 51.4
Solyc10g080160.2 Solanum lycopersicum HOM05D006237 ORTHO05D002967 1.9e-78 297.0 350 50.0
Lalb_Chr01g0001091 Lupinus albus HOM05D006237 ORTHO05D002967 4.3e-78 295.8 364 50.3
Thecc.05G176100 Theobroma cacao HOM05D006237 ORTHO05D002967 7.4e-78 295.0 349 51.9
Lalb_Chr19g0139751 Lupinus albus HOM05D006237 ORTHO05D002967 9.6e-78 294.7 376 50.5
MELO3C005830.2 Cucumis melo HOM05D006237 ORTHO05D002967 1.3e-77 294.3 326 53.4
arahy.Tifrunner.gnm1.ann1.B3F3VS Arachis hypogaea HOM05D006237 ORTHO05D002967 1.6e-77 293.9 388 50.5
Duzib128G1632 Durio zibethinus HOM05D006237 ORTHO05D002967 1.6e-77 293.9 351 51.3
Sabra12G0108700 Salix brachista HOM05D006237 ORTHO05D002967 1.6e-77 293.9 372 50.5
PGSC0003DMG400023687 Solanum tuberosum HOM05D006237 ORTHO05D002967 2.8e-77 293.1 351 50.4
arahy.Tifrunner.gnm1.ann1.C9TN30 Arachis hypogaea HOM05D006237 ORTHO05D002967 8.2e-77 291.6 391 50.6
MD09G1200300 Malus domestica HOM05D006237 ORTHO05D002967 1.1e-76 291.2 352 51.1
FAN09G4095 Fragaria x ananassa HOM05D006237 ORTHO05D002967 5.3e-76 288.9 286 54.9
Peaxi162Scf00078g00351 Petunia axillaris HOM05D006237 ORTHO05D002967 5.3e-76 288.9 279 56.3
Gohir.A09G129100 Gossypium hirsutum HOM05D006237 ORTHO05D002967 1.5e-75 287.3 339 51.0
HPP92_005592 Vanilla planifolia HOM05D006237 ORTHO05D002967 2.0e-75 287.0 380 45.3
HPP92_005582 Vanilla planifolia HOM05D006237 ORTHO05D002967 5.8e-75 285.4 345 47.2
ClCG01G001020 Citrullus lanatus HOM05D006237 ORTHO05D002967 1.0e-74 284.6 363 49.3
Lsat_1_v5_gn_4_66521 Lactuca sativa HOM05D006237 ORTHO05D002967 1.0e-74 284.6 371 49.1
unitig_0.g1076 Utricularia gibba HOM05D006237 ORTHO05D002967 1.0e-74 284.6 226 66.8
Gorai.006G144100 Gossypium raimondii HOM05D006237 ORTHO05D002967 6.5e-74 282.0 266 56.4
Ciclev10005229m.g Citrus clementina HOM05D006237 ORTHO05D002967 1.4e-73 280.8 348 50.0
QL09p013331 Quercus lobata HOM05D006237 ORTHO05D002967 2.5e-73 280.0 343 52.5
SalBow4G0349 Salvia bowleyana HOM05D006237 ORTHO05D002967 4.2e-73 279.3 372 50.8
Atru.chr1.396 Acer truncatum HOM05D006237 ORTHO05D002967 9.3e-73 278.1 356 51.4
Cc02_g29180 Coffea canephora HOM05D006237 ORTHO05D002967 9.3e-73 278.1 182 73.1
Lj3g0001662 Lotus japonicus HOM05D006237 ORTHO05D002967 1.2e-72 277.7 388 47.7
Sed0010472 Sechium edule HOM05D006237 ORTHO05D002967 1.2e-72 277.7 374 48.7
Oeu048745.1 Olea europaea HOM05D006237 ORTHO05D002967 6.1e-72 275.4 396 46.0
ATR0680G220 Amborella trichopoda HOM05D006237 ORTHO05D002967 7.9e-72 275.0 225 62.2
THA.LOC104821384 Tarenaya hassleriana HOM05D006237 ORTHO05D002967 3.0e-71 273.1 379 45.9
Psat6g075200 Pisum sativum HOM05D006237 ORTHO05D002967 8.7e-71 271.6 376 47.1
A06p18660 Brassica napus HOM05D006237 ORTHO05D002967 3.3e-70 269.6 336 51.8
TPR.G21017 Trifolium pratense HOM05D006237 ORTHO05D002967 4.3e-70 269.2 373 45.6
Rhsim03G0189600 Rhododendron simsii HOM05D006237 ORTHO05D002967 4.8e-69 265.8 299 52.8
Medtr3g078370 Medicago truncatula HOM05D006237 ORTHO05D002967 6.3e-69 265.4 383 47.3
vmacro12929 Vaccinium macrocarpon HOM05D006237 ORTHO05D002967 1.8e-68 263.8 156 80.8
Aa31LG4G17550 Aethionema arabicum HOM05D006237 ORTHO05D002967 2.4e-68 263.5 336 52.1
AT3G49080 Arabidopsis thaliana HOM05D006237 ORTHO05D002967 3.1e-68 263.1 179 74.3
CARHR157920 Cardamine hirsuta HOM05D006237 ORTHO05D002967 4.1e-68 262.7 182 72.5
AL5G28600 Arabidopsis lyrata HOM05D006237 ORTHO05D002967 9.0e-68 261.5 179 73.7
Carub.0005s1528 Capsella rubella HOM05D006237 ORTHO05D002967 1.5e-67 260.8 179 73.2
Thhalv10010396m.g Eutrema salsugineum HOM05D006237 ORTHO05D002967 1.5e-67 260.8 180 71.7
BraA06t24944Z Brassica rapa HOM05D006237 ORTHO05D002967 5.9e-67 258.8 294 52.4
CDE06G2505 Ceratophyllum demersum HOM05D003460 ORTHO05D004277 5.9e-67 258.8 367 45.2
PSO173G0153 Papaver somniferum HOM05D006237 ORTHO05D002967 5.9e-67 258.8 405 44.7
HanXRQChr02g0055961 Helianthus annuus HOM05D006237 ORTHO05D002967 1.0e-66 258.1 356 47.8
Phvul.011G049550 Phaseolus vulgaris HOM05D006237 ORTHO05D002967 1.7e-66 257.3 153 78.4
BcaC07g39385 Brassica carinata HOM05D006237 ORTHO05D002967 3.8e-66 256.1 283 54.1
C08p24080 Brassica napus HOM05D006237 ORTHO05D002967 3.8e-66 256.1 283 54.1
BolC8t50029H Brassica oleracea HOM05D006237 ORTHO05D002967 3.8e-66 256.1 283 54.1
Aqoxy7G01479 Aquilegia oxysepala HOM05D006237 ORTHO05D002967 8.5e-66 255.0 312 50.0
PSO566G0038 Papaver somniferum HOM05D006237 ORTHO05D002967 1.4e-65 254.2 391 44.8
BcaB01g00750 Brassica carinata HOM05D006237 ORTHO05D002967 9.4e-65 251.5 292 55.8
ECA248G0219 Erigeron canadensis HOM05D006237 ORTHO05D002967 2.1e-64 250.4 245 60.4
SHI13756 Sapria himalayana HOM05D006237 ORTHO05D002967 7.9e-64 248.4 305 49.5
Gohir.D09G125100 Gossypium hirsutum HOM05D006237 ORTHO05D002967 8.8e-63 245.0 280 50.0
Sp5g12990 Schrenkiella parvula HOM05D006237 ORTHO05D002967 8.8e-63 245.0 362 45.0
CAN.G65.182 Capsicum annuum HOM05D006237 ORTHO05D002967 4.1e-60 236.1 193 63.2
Os07g0658200 Oryza sativa ssp. japonica HOM05D006237 ORTHO05D002967 5.3e-60 235.7 155 73.5
Zm00001eb329680 Zea mays HOM05D006237 ORTHO05D002967 9.1e-60 235.0 335 47.5
Lj4A176T35 Lonicera japonica HOM05D006237 ORTHO05D002967 1.9e-57 227.3 135 80.0
Oeu022599.1 Olea europaea HOM05D006237 ORTHO05D002967 4.5e-51 206.1 392 39.8
SEGI_03568 Sequoiadendron giganteum HOM05D006237 ORTHO05D002967 2.5e-49 200.3 148 62.2
Mapoly0187s0001 Marchantia polymorpha HOM05D006237 ORTHO05D002967 2.3e-39 167.2 150 57.3
Pp3c4_6350 Physcomitrium patens HOM05D006237 ORTHO05D002967 2.8e-37 160.2 144 57.6
ATR1145G006 Amborella trichopoda HOM05D006237 ORTHO05D002967 3.7e-29 133.3 156 50.6
Rhsim09G0091100 Rhododendron simsii HOM05D006237 ORTHO05D002967 3.1e-28 130.2 345 34.8
AagrBONN_evm.TU.Sc2ySwM_362.593 Anthoceros agrestis HOM05D006237 ORTHO05D002967 2.7e-27 127.1 157 47.8
CBR_g21848 Chara braunii HOM05D006237 ORTHO05D002967 4.5e-27 126.3 130 53.8
C03p65840 Brassica napus HOM05D006237 ORTHO05D002967 2.3e-18 97.4 194 38.7
BolC3t18842H Brassica oleracea HOM05D006237 ORTHO05D002967 3.9e-18 96.7 194 38.7
SMO358G0638 Selaginella moellendorffii HOM05D006237 ORTHO05D002967 8.6e-18 95.5 93 48.4
MCO02G196 Micromonas commoda HOM05D006237 ORTHO05D002967 4.7e-16 89.7 112 40.2
Haze_27642 Corylus avellana HOM05D006237 ORTHO05D002967 1.2e-14 85.1 89 43.8
HanXRQChr16g0516261 Helianthus annuus HOM05D006237 ORTHO05D002967 9.2e-12 75.5 57 66.7
Lj4C176T4 Lonicera japonica HOM05D006237 ORTHO05D002967 5.6e-09 66.2 219 37.4
BraA06t25746Z Brassica rapa HOM05D006237 ORTHO05D027135 1.6e-08 64.7 112 42.0
PRCOL_00006480 Prasinoderma coloniale HOM05D006237 ORTHO05D002967 6.8e-07 59.3 102 34.3
Dinv35235 Davidia involucrata HOM05D006237 ORTHO05D002967 5.8e-06 56.2 238 31.5


User provided reference genes

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