Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0005940 Simmondsia chinensis HOM05D003177 ORTHO05D003481 7.5e-224 780.4 457 100.0
Cpa.g.sc97.68 Carica papaya HOM05D003177 ORTHO05D003481 5.9e-144 515.0 450 58.2
Ah.06g183030 Amaranthus hybridus HOM05D003177 ORTHO05D003481 1.2e-141 507.3 440 59.1
QL08p013320 Quercus lobata HOM05D003177 ORTHO05D003481 1.2e-141 507.3 452 68.1
CiPaw.11G183800 Carya illinoinensis HOM05D003177 ORTHO05D003481 8.3e-138 494.6 440 58.6
AUR62015646 Chenopodium quinoa HOM05D003177 ORTHO05D003481 4.1e-137 492.3 442 61.5
Haze_09611 Corylus avellana HOM05D003177 ORTHO05D003481 1.0e-132 477.6 461 56.8
Gorai.002G082600 Gossypium raimondii HOM05D003177 ORTHO05D003481 1.2e-131 474.2 457 65.0
Gohir.D01G061200 Gossypium hirsutum HOM05D003177 ORTHO05D003481 2.0e-131 473.4 457 65.0
FAN10G2257 Fragaria x ananassa HOM05D003177 ORTHO05D003481 7.5e-131 471.5 455 55.4
FvH4_3g21820 Fragaria vesca HOM05D003177 ORTHO05D003481 1.3e-130 470.7 455 56.0
FAN25G3665 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.2e-130 469.9 457 55.1
Gohir.A01G074600 Gossypium hirsutum HOM05D003177 ORTHO05D003481 1.1e-129 467.6 457 64.6
MD03G1211600 Malus domestica HOM05D003177 ORTHO05D003481 2.4e-129 466.5 450 53.1
TAR629G1976 Trochodendron aralioides HOM05D003177 ORTHO05D003481 7.0e-129 464.9 450 65.1
FAN21G3709 Fragaria x ananassa HOM05D003177 ORTHO05D003481 9.2e-129 464.5 444 55.4
FvH4_7g08040 Fragaria vesca HOM05D003177 ORTHO05D003481 7.8e-128 461.5 447 54.6
Cc05_g13250 Coffea canephora HOM05D003177 ORTHO05D003481 3.3e-126 456.1 447 53.5
TWI39G1173 Tripterygium wilfordii HOM05D003177 ORTHO05D003481 3.3e-126 456.1 457 53.4
Manes.03G122901 Manihot esculenta HOM05D003177 ORTHO05D003481 4.3e-126 455.7 449 63.0
Sopen07g032250 Solanum pennellii HOM05D003177 ORTHO05D003481 2.1e-125 453.4 454 60.6
FAN03G0141 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.7e-125 452.2 472 52.5
Aqoxy4G02069 Aquilegia oxysepala HOM05D003177 ORTHO05D003481 6.1e-125 451.8 453 62.7
Peaxi162Scf01086g00156 Petunia axillaris HOM05D003177 ORTHO05D003481 6.1e-125 451.8 454 61.2
Sed0011648 Sechium edule HOM05D003177 ORTHO05D003481 8.0e-125 451.4 455 53.0
Nitab4.5_0000397g0040 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.8e-124 450.3 456 52.6
Potri.001G417400 Populus trichocarpa HOM05D003177 ORTHO05D003481 6.8e-124 448.4 456 63.2
GSVIVG01014607001 Vitis vinifera HOM05D003177 ORTHO05D003481 8.9e-124 448.0 456 61.6
CANSAT11G2707 Cannabis sativa HOM05D003177 ORTHO05D003481 5.7e-123 445.3 455 52.3
Prupe.4G202300 Prunus persica HOM05D003177 ORTHO05D003481 7.5e-123 444.9 427 54.3
RcHm_v2.0_Chr4g0410111 Rosa chinensis HOM05D003177 ORTHO05D003481 4.6e-120 435.6 443 62.8
Cfa020414 Carpinus fangiana HOM05D003177 ORTHO05D003481 5.9e-120 435.3 453 64.0
Actinidia10706 Actinidia chinensis HOM05D003177 ORTHO05D003481 1.3e-119 434.1 401 67.3
CSS0012105 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.7e-119 433.7 451 62.7
Glyma.06G268800 Glycine max HOM05D003177 ORTHO05D003481 3.0e-119 433.0 453 53.6
Lj3g0020379 Lotus japonicus HOM05D003177 ORTHO05D003481 3.0e-119 433.0 457 52.5
Migut.H01856 Erythranthe guttata HOM05D003177 ORTHO05D003481 1.1e-118 431.0 449 61.2
FAN01G1176 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.2e-117 427.6 416 55.3
MSTRG.14415 Avicennia marina HOM05D003177 ORTHO05D003481 8.0e-117 424.9 455 55.8
FAN11G2546 Fragaria x ananassa HOM05D003177 ORTHO05D003481 2.3e-116 423.3 548 45.6
COL.COLO4_09572 Corchorus olitorius HOM05D003177 ORTHO05D003481 4.0e-116 422.5 450 50.0
FAN06G1056 Fragaria x ananassa HOM05D003177 ORTHO05D003481 6.8e-116 421.8 416 54.8
CAN.G337.147 Capsicum annuum HOM05D003177 ORTHO05D003481 1.2e-115 421.0 440 59.1
arahy.Tifrunner.gnm1.ann1.LL10MS Arachis hypogaea HOM05D003177 ORTHO05D003481 9.8e-115 417.9 489 48.9
Ciclev10008545m.g Citrus clementina HOM05D003177 ORTHO05D003481 1.3e-114 417.5 379 68.1
Eucgr.F03427 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.7e-114 417.2 453 60.7
ECA246G0280 Erigeron canadensis HOM05D003177 ORTHO05D003481 2.2e-114 416.8 445 56.4
Duzib268G0600 Durio zibethinus HOM05D003177 ORTHO05D003481 2.9e-114 416.4 454 58.4
Duzib213G0670 Durio zibethinus HOM05D003177 ORTHO05D003481 6.4e-114 415.2 458 59.4
arahy.Tifrunner.gnm1.ann1.2TAV4H Arachis hypogaea HOM05D003177 ORTHO05D003481 8.3e-114 414.8 464 59.3
TPR.G25924 Trifolium pratense HOM05D003177 ORTHO05D003481 1.1e-113 414.5 456 53.1
Sed0011296 Sechium edule HOM05D003177 ORTHO05D003481 1.4e-113 414.1 453 49.7
Nn1g03661 Nelumbo nucifera HOM05D003177 ORTHO05D003481 3.2e-113 412.9 453 58.3
PGSC0003DMG400019225 Solanum tuberosum HOM05D003177 ORTHO05D003481 5.4e-113 412.1 424 56.6
PGR031G3084 Punica granatum HOM05D003177 ORTHO05D003481 2.7e-112 409.8 453 48.8
MELO3C018128.2 Cucumis melo HOM05D003177 ORTHO05D003481 1.0e-111 407.9 449 49.0
Oeu007628.1 Olea europaea HOM05D003177 ORTHO05D003481 3.0e-111 406.4 401 53.6
CsaV3_3G022860 Cucumis sativus L. HOM05D003177 ORTHO05D003481 8.6e-111 404.8 454 49.8
SGA_v2.0_scaffold9G05037 Striga asiatica HOM05D003177 ORTHO05D003481 1.1e-110 404.4 454 47.4
Ca_18849_v3 Cicer arietinum L. HOM05D000068 ORTHO05D000084 1.5e-110 404.1 434 51.4
Nitab4.5_0009192g0010 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.5e-110 404.1 459 48.1
Solyc07g064110.3 Solanum lycopersicum HOM05D003177 ORTHO05D003481 3.3e-110 402.9 456 57.2
Phvul.011G140050 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 5.6e-110 402.1 452 50.7
Psat7g161600 Pisum sativum HOM05D003177 ORTHO05D003481 4.7e-109 399.1 457 49.9
vmacro11767 Vaccinium macrocarpon HOM05D003177 ORTHO05D003481 8.3e-106 388.3 509 53.4
PSO541G2106 Papaver somniferum HOM05D003177 ORTHO05D003481 1.1e-105 387.9 450 53.8
AT4G21880 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 3.5e-104 382.9 451 54.8
BcaC04g21326 Brassica carinata HOM05D003177 ORTHO05D003481 6.0e-104 382.1 454 46.3
AL7G32020 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 1.0e-103 381.3 451 54.8
Sp6g04150 Schrenkiella parvula HOM05D003177 ORTHO05D003481 1.3e-103 380.9 454 46.3
Thhalv10028431m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 2.3e-103 380.2 453 45.7
Medtr4g081220 Medicago truncatula HOM05D003177 ORTHO05D003481 2.3e-103 380.2 443 48.1
AT4G04790 Arabidopsis thaliana HOM05D003177 ORTHO05D003481 2.5e-102 376.7 452 55.5
AL6G48280 Arabidopsis lyrata HOM05D003177 ORTHO05D003481 4.3e-102 375.9 452 55.5
BcaB01g01838 Brassica carinata HOM05D003177 ORTHO05D003481 4.3e-102 375.9 447 45.6
BcaC09g51192 Brassica carinata HOM05D003177 ORTHO05D003481 4.3e-102 375.9 453 44.6
ClCG05G014770 Citrullus lanatus HOM05D003177 ORTHO05D003481 4.3e-102 375.9 458 45.9
C09p33110 Brassica napus HOM05D003177 ORTHO05D003481 7.3e-102 375.2 461 45.6
BolC9t56146H Brassica oleracea HOM05D003177 ORTHO05D003481 7.3e-102 375.2 461 45.6
Sp7g20030 Schrenkiella parvula HOM05D003177 ORTHO05D003481 7.3e-102 375.2 451 46.6
CARHR228640 Cardamine hirsuta HOM05D003177 ORTHO05D003481 9.5e-102 374.8 450 45.3
CARHR252740 Cardamine hirsuta HOM05D003177 ORTHO05D003481 9.5e-102 374.8 451 55.4
Thhalv10024397m.g Eutrema salsugineum HOM05D003177 ORTHO05D003481 9.5e-102 374.8 453 45.3
HanXRQChr05g0159201 Helianthus annuus HOM05D003177 ORTHO05D003481 9.5e-102 374.8 404 59.4
A01p13180 Brassica napus HOM05D003177 ORTHO05D003481 1.2e-101 374.4 453 44.8
PSO675G6436 Papaver somniferum HOM05D003177 ORTHO05D003481 6.2e-101 372.1 450 46.0
Carub.0006s3271 Capsella rubella HOM05D003177 ORTHO05D003481 1.4e-100 370.9 454 55.1
Carub.0007s1949 Capsella rubella HOM05D003177 ORTHO05D003481 4.0e-100 369.4 453 44.4
DCAR_008676 Daucus carota HOM05D003177 ORTHO05D003481 4.0e-100 369.4 276 68.1
BraA01t01262Z Brassica rapa HOM05D003177 ORTHO05D003481 6.8e-100 368.6 466 45.5
BraA09t38176Z Brassica rapa HOM05D003177 ORTHO05D003481 6.8e-100 368.6 471 44.4
A09p26090 Brassica napus HOM05D003177 ORTHO05D003481 1.5e-99 367.5 455 45.3
THA.LOC104813041 Tarenaya hassleriana HOM05D003177 ORTHO05D003481 1.5e-99 367.5 454 45.8
Lj1C863T22 Lonicera japonica HOM05D003177 ORTHO05D003481 2.0e-99 367.1 277 67.1
C01p15880 Brassica napus HOM05D003177 ORTHO05D003481 2.6e-99 366.7 453 44.2
BolC1t01542H Brassica oleracea HOM05D003177 ORTHO05D003481 2.6e-99 366.7 472 43.0
Lalb_Chr19g0134751 Lupinus albus HOM05D003177 ORTHO05D003481 1.9e-97 360.5 456 54.8
Zm00001eb231370 Zea mays HOM05D003177 ORTHO05D003481 3.2e-97 359.8 439 44.2
HPP92_004136 Vanilla planifolia HOM05D003177 ORTHO05D003481 5.4e-97 359.0 452 44.9
Glyma.12G214200 Glycine max HOM05D003177 ORTHO05D003481 4.3e-94 349.4 379 61.5
EL10Ac4g07970 Beta vulgaris HOM05D003177 ORTHO05D003481 7.3e-94 348.6 442 55.9
BcaNung02254 Brassica carinata HOM05D003177 ORTHO05D003481 8.1e-93 345.1 407 45.7
CDE12G0546 Ceratophyllum demersum HOM05D003177 ORTHO05D003481 9.0e-92 341.7 458 41.5
Aa31LG9G9680 Aethionema arabicum HOM05D003177 ORTHO05D003481 4.9e-90 335.9 456 52.4
Lalb_Chr14g0366151 Lupinus albus HOM05D003177 ORTHO05D003481 8.4e-90 335.1 382 50.0
Lj3g0022760 Lotus japonicus HOM05D003177 ORTHO05D003481 2.7e-88 330.1 376 47.3
Dinv22304 Davidia involucrata HOM05D003177 ORTHO05D003481 6.6e-87 325.5 329 66.0
Glyma.13G287400 Glycine max HOM05D003177 ORTHO05D003481 4.3e-86 322.8 378 48.9
Lj4g0006066 Lotus japonicus HOM05D003177 ORTHO05D003481 1.6e-85 320.9 376 47.3
arahy.Tifrunner.gnm1.ann1.W18Y25 Arachis hypogaea HOM05D003177 ORTHO05D003481 3.1e-84 316.6 394 45.9
unitig_749.g13972 Utricularia gibba HOM05D003177 ORTHO05D003481 5.8e-83 312.4 434 40.1
arahy.Tifrunner.gnm1.ann1.P62B18 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.3e-82 311.2 396 45.5
arahy.Tifrunner.gnm1.ann1.7VJC80 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.9e-82 310.1 394 45.4
arahy.Tifrunner.gnm1.ann1.Y3PJTZ Arachis hypogaea HOM05D003177 ORTHO05D003481 3.8e-82 309.7 394 45.2
Lsat_1_v5_gn_5_5721 Lactuca sativa HOM05D003177 ORTHO05D003481 1.2e-80 304.7 440 52.5
Glyma.12G135500 Glycine max HOM05D003177 ORTHO05D003481 6.0e-80 302.4 265 61.5
RcHm_v2.0_Chr5g0037561 Rosa chinensis HOM05D003177 ORTHO05D003481 2.3e-79 300.4 239 63.6
Actinidia35317 Actinidia chinensis HOM05D003177 ORTHO05D003481 3.3e-78 296.6 228 64.0
CsaV3_UNG229000 Cucumis sativus L. HOM05D003177 ORTHO05D003481 1.8e-76 290.8 290 54.1
Eucgr.G00523 Eucalyptus grandis HOM05D003177 ORTHO05D003481 1.1e-73 281.6 241 59.3
ATR0794G044 Amborella trichopoda HOM05D003177 ORTHO05D003481 1.6e-72 277.7 337 45.1
VMungo1127G0069 Vigna mungo HOM05D003177 ORTHO05D003481 3.9e-71 273.1 255 57.6
Phvul.003G295700 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 5.7e-62 242.7 308 47.4
Medtr7g025580 Medicago truncatula HOM05D003177 ORTHO05D003481 9.7e-62 241.9 462 35.7
Hma1.2p1_1546F.1_g289990 Hydrangea macrophylla HOM05D003177 ORTHO05D003481 6.1e-56 222.6 198 59.1
arahy.Tifrunner.gnm1.ann1.P5VPT7 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.8e-55 221.1 248 51.2
Thecc.07G052500 Theobroma cacao HOM05D003177 ORTHO05D003481 1.8e-55 221.1 236 53.0
Medtr7g025530 Medicago truncatula HOM05D003177 ORTHO05D003481 1.1e-54 218.4 487 33.3
Medtr7g007510 Medicago truncatula HOM05D003177 ORTHO05D003481 2.0e-51 207.6 415 35.2
arahy.Tifrunner.gnm1.ann1.BRX1G6 Arachis hypogaea HOM05D003177 ORTHO05D003481 2.0e-43 181.0 196 53.1
Medtr4g133410 Medicago truncatula HOM05D003177 ORTHO05D003481 2.7e-40 170.6 433 30.9
Eucgr.H00088 Eucalyptus grandis HOM05D003177 ORTHO05D003481 5.0e-34 149.8 138 56.5
CSS0025638 Camellia sinensis var. sinensis HOM05D003177 ORTHO05D003481 1.1e-33 148.7 121 62.0
SEGI_25291 Sequoiadendron giganteum HOM05D003177 ORTHO05D003481 4.2e-33 146.7 213 38.0
ECA240G3581 Erigeron canadensis HOM05D000002 ORTHO05D000001 1.5e-30 138.3 226 38.5
AUR62020553 Chenopodium quinoa HOM05D003177 ORTHO05D003481 2.2e-29 134.4 110 57.3
Medtr5g034890 Medicago truncatula HOM05D003177 ORTHO05D003481 2.2e-29 134.4 516 26.6
CsaV3_UNG228990 Cucumis sativus L. HOM05D003177 ORTHO05D003481 8.2e-29 132.5 110 59.1
FAN21G1934 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.1e-28 130.6 103 62.1
FvH4_3g43110 Fragaria vesca HOM05D003177 ORTHO05D003481 5.3e-28 129.8 103 61.2
FvH4_3g43180 Fragaria vesca HOM05D003177 ORTHO05D003481 7.0e-28 129.4 103 61.2
arahy.Tifrunner.gnm1.ann1.C6RLDL Arachis hypogaea HOM05D003177 ORTHO05D003481 2.0e-27 127.9 114 56.1
RcHm_v2.0_Chr5g0037541 Rosa chinensis HOM05D003177 ORTHO05D003481 1.0e-26 125.6 96 65.6
Phvul.005G091800 Phaseolus vulgaris HOM05D003177 ORTHO05D003481 1.3e-26 125.2 107 57.9
arahy.Tifrunner.gnm1.ann1.PSAJ1X Arachis hypogaea HOM05D003177 ORTHO05D003481 5.5e-25 119.8 108 56.5
FvH4_3g42340 Fragaria vesca HOM05D003177 ORTHO05D003481 7.2e-25 119.4 110 56.4
arahy.Tifrunner.gnm1.ann1.LTHE3G Arachis hypogaea HOM05D003177 ORTHO05D003481 9.4e-25 119.0 110 53.6
arahy.Tifrunner.gnm1.ann1.4630L6 Arachis hypogaea HOM05D003177 ORTHO05D003481 1.6e-24 118.2 196 39.8
Glyma.U031131 Glycine max HOM05D003177 ORTHO05D003481 2.1e-24 117.9 110 56.4
TPR.G36746 Trifolium pratense HOM05D003177 ORTHO05D003481 2.7e-24 117.5 120 53.3
TPR.G36748 Trifolium pratense HOM05D003177 ORTHO05D003481 6.1e-24 116.3 115 50.4
FvH4_3g42560 Fragaria vesca HOM05D003177 ORTHO05D003481 4.0e-23 113.6 110 54.5
FAN11G0078 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.0e-23 113.6 104 56.7
FAN11G2904 Fragaria x ananassa HOM05D003177 ORTHO05D003481 4.0e-23 113.6 104 56.7
FAN28G1104 Fragaria x ananassa HOM05D003177 ORTHO05D003481 1.7e-21 108.2 90 58.9
CARHR054770 Cardamine hirsuta HOM05D003177 ORTHO05D003481 4.8e-21 106.7 126 43.7
Medtr2g082940 Medicago truncatula HOM05D003177 ORTHO05D003481 6.3e-21 106.3 122 48.4
Psat5g251840 Pisum sativum HOM05D003177 ORTHO05D003481 1.1e-20 105.5 122 46.7
Potri.011G133100 Populus trichocarpa HOM05D003177 ORTHO05D003481 1.4e-20 105.1 198 56.6
Ca_01752_v3 Cicer arietinum L. HOM05D003177 ORTHO05D003481 7.0e-20 102.8 123 47.2
Medtr8g070020 Medicago truncatula HOM05D003177 ORTHO05D003481 7.0e-20 102.8 362 27.9
VMungo1127G0088 Vigna mungo HOM05D003177 ORTHO05D003481 3.5e-19 100.5 110 49.1
DCAR_032350 Daucus carota HOM05D003177 ORTHO05D003481 5.0e-18 96.7 104 53.8
Pp3c12_4690 Physcomitrium patens HOM05D015612 ORTHO05D003481 5.0e-18 96.7 229 30.1
Lju3590A0T11 Lonicera japonica HOM05D003177 ORTHO05D003481 3.3e-17 94.0 78 57.7
ECA240G2036 Erigeron canadensis HOM05D003177 ORTHO05D003481 9.5e-17 92.4 137 35.0
Lj1A863T65 Lonicera japonica HOM05D003177 ORTHO05D003481 1.8e-15 88.2 65 63.1
Nitab4.5_0000743g0080 Nicotiana tabacum HOM05D003177 ORTHO05D003481 1.8e-15 88.2 108 41.7
SMO170G0018 Selaginella moellendorffii HOM05D003177 ORTHO05D003481 4.0e-15 87.0 269 24.5
Duzib213G0184 Durio zibethinus HOM05D003177 ORTHO05D003481 5.2e-15 86.7 73 61.6
Glyma.12G135400 Glycine max HOM05D003177 ORTHO05D003481 6.8e-15 86.3 86 53.5
FAN11G0113 Fragaria x ananassa HOM05D003177 ORTHO05D003481 3.4e-14 84.0 89 47.2
DCAR_015959 Daucus carota HOM05D003177 ORTHO05D003481 1.3e-13 82.0 132 40.2
AagrBONN_evm.TU.Sc2ySwM_369.261 Anthoceros agrestis HOM05D015612 ORTHO05D003481 2.8e-13 80.9 204 26.5
Sabra16G0283700 Salix brachista HOM05D003177 ORTHO05D003481 1.4e-12 78.6 65 58.5
Pp3c10_3690 Physcomitrium patens HOM05D015612 ORTHO05D003481 1.8e-12 78.2 157 33.8
CAN.G337.89 Capsicum annuum HOM05D003177 ORTHO05D003481 4.1e-12 77.0 91 37.4
Medtr7g025525 Medicago truncatula HOM05D003177 ORTHO05D003481 6.6e-10 69.7 68 52.9
CBR_g24294 Chara braunii HOM05D015612 ORTHO05D003481 1.9e-09 68.2 195 26.2
RcHm_v2.0_Chr5g0037551 Rosa chinensis HOM05D003177 ORTHO05D003481 3.3e-09 67.4 43 74.4
VMungo1080G1398 Vigna mungo HOM05D003177 ORTHO05D003481 5.6e-09 66.6 47 66.0
Lju3590A0T10 Lonicera japonica HOM05D003177 ORTHO05D003481 1.8e-07 61.6 201 28.4
Eucgr.J00432 Eucalyptus grandis HOM05D003177 ORTHO05D003481 8.9e-07 59.3 57 52.6
AagrBONN_evm.TU.Sc2ySwM_344.4618 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.5e-06 58.5 263 23.6


User provided reference genes

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