Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0003370 Simmondsia chinensis HOM05D004772 ORTHO05D006892 0.0e+00 1262.3 672 100.0
GSVIVG01035090001 Vitis vinifera HOM05D004772 ORTHO05D006892 1.7e-219 766.5 676 62.9
Hma1.2p1_0078F.1_g040280 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 7.0e-218 761.1 675 63.6
TAR362G0678 Trochodendron aralioides HOM05D004772 ORTHO05D006892 1.7e-216 756.5 590 69.2
Actinidia18636 Actinidia chinensis HOM05D004772 ORTHO05D006892 2.9e-216 755.7 652 63.3
PGR004G0606 Punica granatum HOM05D004772 ORTHO05D006892 5.0e-216 755.0 678 62.2
MD13G1162200 Malus domestica HOM05D004772 ORTHO05D006892 7.2e-215 751.1 676 62.1
CiPaw.02G079000 Carya illinoinensis HOM05D004772 ORTHO05D006892 9.4e-215 750.7 661 62.8
TWI09G0846 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 2.1e-214 749.6 670 62.2
MD16G1162000 Malus domestica HOM05D004772 ORTHO05D006892 3.6e-214 748.8 606 66.8
Prupe.1G129500 Prunus persica HOM05D004772 ORTHO05D006892 5.2e-213 745.0 674 62.5
TWI73G1272 Tripterygium wilfordii HOM05D004772 ORTHO05D006892 8.8e-213 744.2 607 65.2
Dinv29709 Davidia involucrata HOM05D004772 ORTHO05D006892 1.3e-211 740.3 673 62.1
Thecc.04G291000 Theobroma cacao HOM05D004772 ORTHO05D006892 1.3e-211 740.3 673 60.9
Potri.008G211400 Populus trichocarpa HOM05D004772 ORTHO05D006892 3.7e-211 738.8 651 62.5
Ca_21472_v3 Cicer arietinum L. HOM05D004772 ORTHO05D006892 7.0e-210 734.6 630 62.9
Nn3g21575 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.6e-209 733.4 664 61.7
Glyma.17G029600 Glycine max HOM05D004772 ORTHO05D006892 3.5e-209 732.3 632 61.9
Gohir.A09G063500 Gossypium hirsutum HOM05D004772 ORTHO05D006892 8.5e-208 727.6 686 59.9
Gorai.006G077200 Gossypium raimondii HOM05D004772 ORTHO05D006892 1.5e-207 726.9 690 59.6
Potri.010G005600 Populus trichocarpa HOM05D004772 ORTHO05D006892 1.5e-207 726.9 661 61.9
Eucgr.E01101 Eucalyptus grandis HOM05D004772 ORTHO05D006892 1.9e-207 726.5 679 59.9
VMungo1215G3292 Vigna mungo HOM05D004772 ORTHO05D006892 1.9e-207 726.5 630 61.6
FvH4_4g18900 Fragaria vesca HOM05D004772 ORTHO05D006892 3.2e-207 725.7 612 64.7
Gohir.D09G062400 Gossypium hirsutum HOM05D004772 ORTHO05D006892 5.5e-207 724.9 690 59.6
RcHm_v2.0_Chr4g0423801 Rosa chinensis HOM05D004772 ORTHO05D006892 2.7e-206 722.6 607 64.4
Glyma.07G244300 Glycine max HOM05D004772 ORTHO05D006892 6.1e-206 721.5 630 61.4
Cpa.g.sc9.115 Carica papaya HOM05D004772 ORTHO05D006892 1.0e-205 720.7 647 60.1
Sed0023608 Sechium edule HOM05D004772 ORTHO05D006892 1.8e-205 719.9 671 59.9
Phvul.003G108600 Phaseolus vulgaris HOM05D004772 ORTHO05D006892 2.3e-205 719.5 630 61.3
PSO731G0023 Papaver somniferum HOM05D004772 ORTHO05D006892 5.2e-205 718.4 665 60.8
Hund11943 Selenicereus undatus HOM05D004772 ORTHO05D006892 2.6e-204 716.1 663 60.8
CANSAT78G1075 Cannabis sativa HOM05D004772 ORTHO05D006892 3.4e-204 715.7 674 60.7
HanXRQChr03g0085471 Helianthus annuus HOM05D004772 ORTHO05D006892 3.4e-204 715.7 571 65.0
QL06p010892 Quercus lobata HOM05D004772 ORTHO05D006892 3.4e-204 715.7 669 59.8
TPR.G22770 Trifolium pratense HOM05D004772 ORTHO05D006892 3.4e-204 715.7 586 64.5
Lj4g0015807 Lotus japonicus HOM05D004772 ORTHO05D006892 4.4e-204 715.3 608 63.8
Medtr4g120470 Medicago truncatula HOM05D004772 ORTHO05D006892 5.7e-204 714.9 635 61.3
PSO764G0237 Papaver somniferum HOM05D004772 ORTHO05D006892 7.5e-204 714.5 665 60.2
FAN12G2191 Fragaria x ananassa HOM05D004772 ORTHO05D006892 9.8e-204 714.1 631 62.8
Lalb_Chr13g0298261 Lupinus albus HOM05D004772 ORTHO05D006892 9.8e-204 714.1 578 64.7
Sabra10G0004800 Salix brachista HOM05D004772 ORTHO05D006892 3.7e-203 712.2 685 59.1
THA.LOC104802592 Tarenaya hassleriana HOM05D004772 ORTHO05D006892 4.8e-203 711.8 655 60.6
FAN07G2363 Fragaria x ananassa HOM05D004772 ORTHO05D006892 6.3e-203 711.4 633 62.7
ECA240G4356 Erigeron canadensis HOM05D004772 ORTHO05D006892 1.4e-202 710.3 612 63.1
FAN12G3151 Fragaria x ananassa HOM05D004772 ORTHO05D006892 1.4e-202 710.3 631 62.6
Cc03_g01340 Coffea canephora HOM05D004772 ORTHO05D006892 2.4e-202 709.5 668 59.4
CsaV3_6G022660 Cucumis sativus L. HOM05D004772 ORTHO05D006892 5.4e-202 708.4 671 59.2
DCAR_027042 Daucus carota HOM05D004772 ORTHO05D006892 1.2e-201 707.2 624 62.7
Lsat_1_v5_gn_6_76160 Lactuca sativa HOM05D004772 ORTHO05D006892 1.2e-201 707.2 670 59.4
MSTRG.24809 Avicennia marina HOM05D004772 ORTHO05D006892 2.0e-201 706.4 658 59.4
AUR62016163 Chenopodium quinoa HOM05D004772 ORTHO05D006892 2.7e-201 706.1 644 61.0
MELO3C021296.2 Cucumis melo HOM05D004772 ORTHO05D006892 1.1e-199 700.7 671 58.1
Cfa015449 Carpinus fangiana HOM05D004772 ORTHO05D006892 1.0e-197 694.1 662 58.6
Aqoxy5G00804 Aquilegia oxysepala HOM05D004772 ORTHO05D006892 1.8e-197 693.3 658 59.1
Sopen01g026980 Solanum pennellii HOM05D004772 ORTHO05D006892 4.0e-197 692.2 621 61.4
Solyc01g065580.4 Solanum lycopersicum HOM05D004772 ORTHO05D006892 5.2e-197 691.8 636 60.5
CAN.G14.7 Capsicum annuum HOM05D004772 ORTHO05D006892 4.4e-196 688.7 580 62.4
AUR62035077 Chenopodium quinoa HOM05D004772 ORTHO05D006892 5.7e-196 688.3 663 58.7
Lj6A683G52 Lonicera japonica HOM05D004772 ORTHO05D006892 4.9e-195 685.3 680 57.9
Rhsim04G0228200 Rhododendron simsii HOM05D004772 ORTHO05D006892 6.3e-195 684.9 673 58.8
ClCG06G004870 Citrullus lanatus HOM05D004772 ORTHO05D006892 1.6e-193 680.2 697 55.8
Carub.0003s1652 Capsella rubella HOM05D004772 ORTHO05D006892 2.7e-193 679.5 646 58.2
SGA_v2.0_scaffold119G32697 Striga asiatica HOM05D004772 ORTHO05D006892 2.7e-193 679.5 669 57.2
PGSC0003DMG400001190 Solanum tuberosum HOM05D004772 ORTHO05D006892 7.7e-193 677.9 621 60.5
Thhalv10020259m.g Eutrema salsugineum HOM05D004772 ORTHO05D006892 1.0e-192 677.6 650 57.7
Sp3g15060 Schrenkiella parvula HOM05D004772 ORTHO05D006892 2.3e-192 676.4 681 56.7
Nitab4.5_0007304g0010 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.1e-191 674.1 645 59.7
Migut.N00065 Erythranthe guttata HOM05D004772 ORTHO05D006892 1.9e-191 673.3 671 57.1
arahy.Tifrunner.gnm1.ann1.0U01EG Arachis hypogaea HOM05D004772 ORTHO05D006892 1.2e-190 670.6 649 57.2
Manes.03G200000 Manihot esculenta HOM05D004772 ORTHO05D006892 2.8e-190 669.5 668 57.5
BolC5t33706H Brassica oleracea HOM05D004772 ORTHO05D006892 6.1e-190 668.3 672 57.0
Haze_01138 Corylus avellana HOM05D004772 ORTHO05D006892 6.1e-190 668.3 662 57.6
Haze_01142 Corylus avellana HOM05D004772 ORTHO05D006892 1.0e-189 667.5 662 57.6
C05p49530 Brassica napus HOM05D004772 ORTHO05D006892 1.4e-189 667.2 672 56.8
BcaC05g28847 Brassica carinata HOM05D004772 ORTHO05D006892 3.0e-189 666.0 671 56.2
A05p32820 Brassica napus HOM05D004772 ORTHO05D006892 1.2e-188 664.1 670 56.3
AL3G29730 Arabidopsis lyrata HOM05D004772 ORTHO05D006892 2.6e-188 662.9 618 59.5
BcaB06g25777 Brassica carinata HOM05D004772 ORTHO05D006892 2.6e-188 662.9 655 57.3
BraA05t22104Z Brassica rapa HOM05D004772 ORTHO05D006892 4.4e-188 662.1 670 56.4
EL10Ac3g04940 Beta vulgaris HOM05D004772 ORTHO05D006892 7.5e-188 661.4 636 59.6
Peaxi162Scf00065g01018 Petunia axillaris HOM05D004772 ORTHO05D006892 8.3e-187 657.9 648 58.5
Aa31LG8G3880 Aethionema arabicum HOM05D004772 ORTHO05D006892 4.1e-186 655.6 692 55.3
ATR0693G185 Amborella trichopoda HOM05D004772 ORTHO05D006892 9.2e-186 654.4 620 58.9
AT3G16810 Arabidopsis thaliana HOM05D004772 ORTHO05D006892 2.7e-185 652.9 670 55.8
Oeu054008.1 Olea europaea HOM05D004772 ORTHO05D006892 5.0e-184 648.7 545 62.9
Ciclev10004585m.g Citrus clementina HOM05D004772 ORTHO05D006892 1.0e-181 641.0 667 56.5
Duzib151G1106 Durio zibethinus HOM05D004772 ORTHO05D006892 1.9e-178 630.2 670 55.1
Nitab4.5_0000361g0050 Nicotiana tabacum HOM05D004772 ORTHO05D006892 1.1e-175 620.9 515 63.1
CSS0008369 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 6.2e-174 615.1 695 54.2
vmacro08098 Vaccinium macrocarpon HOM05D004772 ORTHO05D006892 5.2e-173 612.1 613 58.7
SalBow5G3355 Salvia bowleyana HOM05D004772 ORTHO05D006892 7.5e-172 608.2 658 54.1
Os03g0831100 Oryza sativa ssp. japonica HOM05D004772 ORTHO05D006892 4.7e-166 589.0 614 53.3
CARHR092060 Cardamine hirsuta HOM05D004772 ORTHO05D006892 6.8e-165 585.1 646 52.8
CDE02G0409 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 9.9e-164 581.3 645 52.7
Psat4g024680 Pisum sativum HOM05D004772 ORTHO05D006892 8.4e-163 578.2 630 52.4
CSS0024712 Camellia sinensis var. sinensis HOM05D004772 ORTHO05D006892 1.7e-160 570.5 612 56.7
COL.COLO4_34697 Corchorus olitorius HOM05D004772 ORTHO05D006892 2.6e-156 556.6 669 51.0
MBI18_g04559_MAGBIO Magnolia biondii HOM05D004772 ORTHO05D006892 1.7e-155 553.9 638 53.0
Atru.chr4.2923 Acer truncatum HOM05D004772 ORTHO05D006892 4.9e-155 552.4 671 52.3
Hma1.2p1_0078F.1_g040270 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.8e-149 533.9 462 65.8
SMO367G0742 Selaginella moellendorffii HOM05D004772 ORTHO05D006892 1.7e-131 474.2 587 46.0
HPP92_010664 Vanilla planifolia HOM05D004772 ORTHO05D006892 1.4e-130 471.1 629 48.2
Pp3c5_10580 Physcomitrium patens HOM05D004772 ORTHO05D006892 1.6e-126 457.6 635 45.2
Mapoly0099s0044 Marchantia polymorpha HOM05D004772 ORTHO05D006892 9.3e-122 441.8 725 41.0
CAN.G1132.3 Capsicum annuum HOM05D004772 ORTHO05D006892 5.3e-117 426.0 360 64.2
AagrBONN_evm.TU.Sc2ySwM_344.4680 Anthoceros agrestis HOM05D004772 ORTHO05D006892 3.6e-113 413.3 696 41.7
unitig_747.g21102 Utricularia gibba HOM05D004772 ORTHO05D006892 1.2e-105 388.3 681 42.0
AUR62015585 Chenopodium quinoa HOM05D004772 ORTHO05D006892 1.1e-98 365.2 427 50.4
CBR_g50950 Chara braunii HOM05D004772 ORTHO05D006892 3.2e-98 363.6 644 36.3
Oeu006429.1 Olea europaea HOM05D004772 ORTHO05D006892 2.9e-91 340.5 545 41.8
SHI00201 Sapria himalayana HOM05D004772 ORTHO05D006892 1.1e-90 338.6 422 51.4
FAN17G1707 Fragaria x ananassa HOM05D004772 ORTHO05D006892 7.2e-90 335.9 300 58.0
CDE09G1302 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 6.1e-89 332.8 320 55.6
Psat5g033800 Pisum sativum HOM05D004772 ORTHO05D006892 1.2e-87 328.6 351 52.1
CDE09G0311 Ceratophyllum demersum HOM05D004772 ORTHO05D006892 1.8e-80 304.7 250 66.0
Zm00001eb063600 Zea mays HOM05D004772 ORTHO05D006892 2.3e-72 277.7 312 50.3
MCO02G008 Micromonas commoda HOM05D004772 ORTHO05D006892 1.6e-65 255.0 641 31.7
Cre12.g528950 Chlamydomonas reinhardtii HOM05D004772 ORTHO05D006892 4.4e-63 246.9 719 29.2
Hma1.2p1_0078F.1_g040290 Hydrangea macrophylla HOM05D004772 ORTHO05D006892 1.6e-49 201.8 146 67.1
C09p33250 Brassica napus HOM05D004772 ORTHO05D006892 2.1e-49 201.4 257 45.5
BolC5t30856H Brassica oleracea HOM05D004772 ORTHO05D006892 4.0e-48 197.2 251 47.8
AL769U10010 Arabidopsis lyrata HOM05D000209 ORTHO05D000129 1.7e-43 181.8 196 56.6
BolC9t56162H Brassica oleracea HOM05D004772 ORTHO05D006892 8.1e-41 172.9 251 43.8
C05p21600 Brassica napus HOM05D004772 ORTHO05D006892 1.2e-39 169.1 251 43.4
PRCOL_00000476 Prasinoderma coloniale HOM05D004772 ORTHO05D006892 2.0e-39 168.3 631 27.6
Lalb_Chr12g0201101 Lupinus albus HOM05D004772 ORTHO05D006892 5.1e-35 153.7 177 52.0
SGA_v2.0_scaffold119G32683 Striga asiatica HOM05D000890 ORTHO05D000697 9.9e-31 139.4 132 54.5
Lalb_Chr12g0201121 Lupinus albus HOM05D004772 ORTHO05D006892 1.3e-30 139.0 102 63.7
Glyma.08G191100 Glycine max HOM05D004772 ORTHO05D006892 1.1e-29 136.0 99 70.7
SEGI_16207 Sequoiadendron giganteum HOM05D004772 ORTHO05D006892 1.4e-29 135.6 98 67.3
BcaC05g26176 Brassica carinata HOM05D004772 ORTHO05D006892 5.1e-27 127.1 152 47.4
SalBow1G8756 Salvia bowleyana HOM05D004772 ORTHO05D006892 3.1e-24 117.9 192 41.1
Lalb_Chr12g0201111 Lupinus albus HOM05D004772 ORTHO05D020841 1.2e-23 115.9 151 47.0
Actinidia40307 Actinidia chinensis HOM05D004772 ORTHO05D006892 1.7e-22 112.1 83 63.9
SGA_v2.0_scaffold594G53106 Striga asiatica HOM05D004772 ORTHO05D006892 7.9e-20 103.2 75 62.7
HPP92_010686 Vanilla planifolia HOM05D004772 ORTHO05D006892 7.9e-20 103.2 126 48.4
BcaC04g21315 Brassica carinata HOM05D004772 ORTHO05D006892 5.6e-18 97.1 153 40.5
Cfa022899 Carpinus fangiana HOM05D004772 ORTHO05D006892 5.6e-18 97.1 341 25.2
Zm00001eb253290 Zea mays HOM05D004772 ORTHO05D037858 2.2e-14 85.1 81 61.7
Zm00001eb258700 Zea mays HOM05D004772 ORTHO05D020841 4.9e-14 84.0 142 35.9
Zm00001eb103920 Zea mays HOM05D004772 ORTHO05D020841 6.5e-14 83.6 142 35.9
Zm00001eb355950 Zea mays HOM05D004772 ORTHO05D020841 1.1e-13 82.8 142 35.2
Zm00001eb103930 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 142 35.2
Zm00001eb246110 Zea mays HOM05D004772 ORTHO05D020841 1.4e-13 82.4 142 35.2
Zm00001eb160280 Zea mays HOM05D004772 ORTHO05D020841 4.2e-13 80.9 142 34.5
Psat1g126160 Pisum sativum HOM05D004772 ORTHO05D009869 9.3e-13 79.7 77 58.4
BcaC01g03298 Brassica carinata HOM05D003366 ORTHO05D004045 1.5e-10 72.4 97 48.5
Medtr4g120460 Medicago truncatula HOM05D004772 ORTHO05D032275 2.8e-09 68.2 44 70.5
Nn4g25712 Nelumbo nucifera HOM05D004772 ORTHO05D006892 1.1e-08 66.2 120 36.7
BcaB04g18910 Brassica carinata HOM05D004772 ORTHO05D032275 5.9e-07 60.5 83 38.6


User provided reference genes

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