Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0002430 Simmondsia chinensis HOM05D006787 ORTHO05D008366 0.0e+00 1253.0 683 100.0
Hund22687 Selenicereus undatus HOM05D006787 ORTHO05D008366 1.3e-211 740.3 656 61.7
TAR636G3644 Trochodendron aralioides HOM05D006787 ORTHO05D008366 3.2e-194 682.6 652 60.7
EL10Ac3g06180 Beta vulgaris HOM05D006787 ORTHO05D008366 2.1e-193 679.9 661 57.0
QL10p064688 Quercus lobata HOM05D006787 ORTHO05D008366 1.1e-189 667.5 657 58.3
Prupe.6G118500 Prunus persica HOM05D006787 ORTHO05D008366 1.2e-188 664.1 658 57.8
Nn7g37422 Nelumbo nucifera HOM05D006787 ORTHO05D008366 5.8e-188 661.8 654 56.1
Dinv33252 Davidia involucrata HOM05D006787 ORTHO05D008366 2.2e-187 659.8 610 58.9
QL10p065815 Quercus lobata HOM05D006787 ORTHO05D008366 4.9e-187 658.7 657 58.0
RcHm_v2.0_Chr2g0084391 Rosa chinensis HOM05D006787 ORTHO05D008366 6.5e-187 658.3 577 66.7
Sabra17G0005700 Salix brachista HOM05D006787 ORTHO05D008366 6.5e-187 658.3 650 58.8
Hma1.2p1_0000F.1_g000320 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 8.4e-187 657.9 579 60.8
Potri.017G001600 Populus trichocarpa HOM05D006787 ORTHO05D008366 1.4e-186 657.1 650 58.2
AUR62023690 Chenopodium quinoa HOM05D006787 ORTHO05D008366 2.1e-185 653.3 597 59.6
Duzib168G0144 Durio zibethinus HOM05D006787 ORTHO05D008366 1.0e-184 651.0 655 56.8
Haze_11111 Corylus avellana HOM05D006787 ORTHO05D008366 1.3e-184 650.6 655 58.0
Thecc.05G000800 Theobroma cacao HOM05D006787 ORTHO05D008366 1.3e-184 650.6 630 55.4
CiPaw.02G125400 Carya illinoinensis HOM05D006787 ORTHO05D008366 3.9e-184 649.0 668 56.7
MD11G1156300 Malus domestica HOM05D006787 ORTHO05D008366 8.7e-184 647.9 659 59.2
Cfa008529 Carpinus fangiana HOM05D006787 ORTHO05D008366 1.1e-183 647.5 568 64.6
FvH4_1g00100 Fragaria vesca HOM05D006787 ORTHO05D008366 1.1e-183 647.5 585 65.1
Ciclev10019183m.g Citrus clementina HOM05D006787 ORTHO05D008366 3.3e-183 646.0 663 60.5
FAN23G2311 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.3e-182 644.0 595 64.4
FAN28G0724 Fragaria x ananassa HOM05D006787 ORTHO05D008366 1.6e-182 643.7 595 64.0
FAN26G1372 Fragaria x ananassa HOM05D006787 ORTHO05D008366 3.7e-182 642.5 585 62.1
TWI63G1373 Tripterygium wilfordii HOM05D006787 ORTHO05D008366 3.1e-181 639.4 659 54.9
Atru.chr3.1966 Acer truncatum HOM05D006787 ORTHO05D008366 4.5e-180 635.6 667 58.5
Actinidia18386 Actinidia chinensis HOM05D006787 ORTHO05D003440 5.9e-180 635.2 591 60.1
AL4G27180 Arabidopsis lyrata HOM05D006787 ORTHO05D008366 1.4e-178 630.6 587 58.9
Manes.01G009700 Manihot esculenta HOM05D006787 ORTHO05D008366 4.2e-178 629.0 658 53.8
PGR142G3161 Punica granatum HOM05D006787 ORTHO05D008366 5.5e-178 628.6 672 56.2
Aa31LG5G5150 Aethionema arabicum HOM05D006787 ORTHO05D008366 9.3e-178 627.9 596 58.1
MBI10_g27212_MAGBIO Magnolia biondii HOM05D006787 ORTHO05D008366 1.6e-177 627.1 650 55.1
BolC3t14481H Brassica oleracea HOM05D006787 ORTHO05D008366 2.7e-177 626.3 580 59.5
Sp4g14240 Schrenkiella parvula HOM05D006787 ORTHO05D008366 3.6e-177 625.9 595 57.1
Lalb_Chr10g0097341 Lupinus albus HOM05D006787 ORTHO05D008366 6.1e-177 625.2 579 63.6
AT2G31890 Arabidopsis thaliana HOM05D006787 ORTHO05D008366 2.3e-176 623.2 590 60.7
Nitab4.5_0006083g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 3.9e-176 622.5 587 63.4
VMungo0331G0945 Vigna mungo HOM05D006787 ORTHO05D008366 8.7e-176 621.3 656 56.4
BraA03t11058Z Brassica rapa HOM05D000200 ORTHO05D000262 1.1e-175 620.9 585 58.5
Carub.0004s1319 Capsella rubella HOM05D006787 ORTHO05D008366 1.5e-175 620.5 590 57.8
CARHR125600 Cardamine hirsuta HOM05D006787 ORTHO05D008366 1.5e-175 620.5 668 54.6
AUR62002496 Chenopodium quinoa HOM05D006787 ORTHO05D008366 5.7e-175 618.6 653 54.4
CSS0000740 Camellia sinensis var. sinensis HOM05D006787 ORTHO05D008366 4.8e-174 615.5 588 61.1
Gohir.D06G185000 Gossypium hirsutum HOM05D006787 ORTHO05D008366 6.3e-174 615.1 652 54.1
Thhalv10016356m.g Eutrema salsugineum HOM05D006787 ORTHO05D008366 8.2e-174 614.8 579 58.4
Hma1.2p1_0000F.1_g000310 Hydrangea macrophylla HOM05D006787 ORTHO05D008366 1.5e-172 610.5 592 57.3
Gorai.010G216300 Gossypium raimondii HOM05D006787 ORTHO05D008366 2.6e-172 609.8 652 54.8
Lju124A5G21 Lonicera japonica HOM05D006787 ORTHO05D008366 4.5e-172 609.0 584 57.5
COL.COLO4_07294 Corchorus olitorius HOM05D006787 ORTHO05D008366 5.9e-172 608.6 628 56.5
ClCG06G009900 Citrullus lanatus HOM05D006787 ORTHO05D008366 1.7e-171 607.1 666 51.2
Eucgr.H00246 Eucalyptus grandis HOM05D006787 ORTHO05D008366 1.7e-171 607.1 629 56.0
Nitab4.5_0005148g0010 Nicotiana tabacum HOM05D006787 ORTHO05D008366 5.5e-170 602.1 587 61.8
Glyma.07G076000 Glycine max HOM05D006787 ORTHO05D008366 7.2e-170 601.7 689 53.8
Gohir.A06G175100 Gossypium hirsutum HOM05D006787 ORTHO05D008366 9.4e-170 601.3 655 53.6
PGSC0003DMG400006459 Solanum tuberosum HOM05D006787 ORTHO05D008366 1.2e-169 600.9 596 61.7
PSO357G0106 Papaver somniferum HOM05D006787 ORTHO05D008366 2.7e-169 599.7 669 54.7
MELO3C008513.2 Cucumis melo HOM05D006787 ORTHO05D008366 6.1e-169 598.6 669 55.8
Peaxi162Scf00057g01911 Petunia axillaris HOM05D006787 ORTHO05D008366 1.4e-168 597.4 590 61.4
Oeu014980.1 Olea europaea HOM05D006787 ORTHO05D008366 2.3e-168 596.7 556 64.6
Glyma.03G015700 Glycine max HOM05D006787 ORTHO05D008366 5.1e-168 595.5 659 54.6
MSTRG.11562 Avicennia marina HOM05D006787 ORTHO05D008366 6.7e-168 595.1 584 59.8
Phvul.010G093100 Phaseolus vulgaris HOM05D006787 ORTHO05D008366 1.1e-167 594.3 664 54.4
Cc03_g16180 Coffea canephora HOM05D006787 ORTHO05D008366 2.6e-167 593.2 587 59.5
Sopen12g008290 Solanum pennellii HOM05D006787 ORTHO05D008366 1.7e-166 590.5 587 58.8
Cpa.g.sc9.243 Carica papaya HOM05D006787 ORTHO05D008366 3.7e-166 589.3 644 51.9
CsaV3_2G011300 Cucumis sativus L. HOM05D006787 ORTHO05D008366 1.1e-165 587.8 674 54.9
Lj3g0015930 Lotus japonicus HOM05D006787 ORTHO05D008366 1.1e-165 587.8 599 56.3
THA.LOC104800940 Tarenaya hassleriana HOM05D006787 ORTHO05D008366 1.1e-165 587.8 621 54.4
Solyc12g017510.2 Solanum lycopersicum HOM05D006787 ORTHO05D008366 9.1e-165 584.7 592 57.8
TPR.G1526 Trifolium pratense HOM05D006787 ORTHO05D008366 1.2e-164 584.3 653 54.8
CAN.G207.7 Capsicum annuum HOM05D006787 ORTHO05D008366 2.2e-163 580.1 586 57.0
Lsat_1_v5_gn_6_92560 Lactuca sativa HOM05D006787 ORTHO05D008366 1.1e-162 577.8 584 53.9
C03p21010 Brassica napus HOM05D006787 ORTHO05D008366 2.5e-162 576.6 555 57.8
arahy.Tifrunner.gnm1.ann1.RN5NMY Arachis hypogaea HOM05D006787 ORTHO05D008366 3.2e-162 576.2 631 56.6
Migut.O00275 Erythranthe guttata HOM05D006787 ORTHO05D008366 5.5e-162 575.5 600 55.5
ATR0743G046 Amborella trichopoda HOM05D006787 ORTHO05D008366 1.6e-161 573.9 602 59.1
Ca_25786_v3 Cicer arietinum L. HOM05D006787 ORTHO05D008366 1.6e-161 573.9 581 57.8
arahy.Tifrunner.gnm1.ann1.M1INQM Arachis hypogaea HOM05D006787 ORTHO05D008366 8.0e-161 571.6 630 56.2
A03p17910 Brassica napus HOM05D006787 ORTHO05D008366 8.0e-161 571.6 557 56.9
SGA_v2.0_scaffold25G10734 Striga asiatica HOM05D006787 ORTHO05D008366 8.0e-161 571.6 587 58.3
Medtr8g432340 Medicago truncatula HOM05D006787 ORTHO05D008366 5.7e-159 565.5 580 56.7
CANSAT56G3581 Cannabis sativa HOM05D006787 ORTHO05D008366 7.4e-159 565.1 580 54.8
HPP92_011440 Vanilla planifolia HOM05D006787 ORTHO05D008366 1.7e-158 563.9 644 55.3
SalBow5G4178 Salvia bowleyana HOM05D006787 ORTHO05D008366 1.1e-157 561.2 585 59.0
ECA248G2491 Erigeron canadensis HOM05D006787 ORTHO05D008366 1.0e-152 544.7 591 54.8
GSVIVG01038263001 Vitis vinifera HOM05D006787 ORTHO05D008366 1.2e-151 541.2 453 66.9
Aqoxy4G00084 Aquilegia oxysepala HOM05D006787 ORTHO05D008366 2.6e-151 540.0 584 51.4
Psat4g152520 Pisum sativum HOM05D006787 ORTHO05D008366 7.5e-151 538.5 598 55.9
Sed0010252 Sechium edule HOM05D006787 ORTHO05D008366 2.4e-149 533.5 556 55.8
HanXRQChr12g0374641 Helianthus annuus HOM05D006787 ORTHO05D008366 1.2e-148 531.2 580 51.9
vmacro00728 Vaccinium macrocarpon HOM05D006787 ORTHO05D008366 4.7e-145 519.2 438 67.1
COL.COLO4_16044 Corchorus olitorius HOM05D006787 ORTHO05D008366 1.4e-141 507.7 626 49.8
unitig_22.g5322 Utricularia gibba HOM05D006787 ORTHO05D008366 2.9e-131 473.4 555 51.0
Zm00001eb120920 Zea mays HOM05D006787 ORTHO05D008366 8.6e-131 471.9 566 47.3
Os03g0425000 Oryza sativa ssp. japonica HOM05D006787 ORTHO05D008366 1.5e-130 471.1 550 48.5
TPR.G9807 Trifolium pratense HOM05D006787 ORTHO05D008366 2.0e-124 450.7 653 45.8
SEGI_12983 Sequoiadendron giganteum HOM05D006787 ORTHO05D008366 1.3e-110 404.8 609 43.7
BcaB01g04009 Brassica carinata HOM05D006787 ORTHO05D008366 6.7e-83 312.8 286 55.6
Mapoly0069s0042 Marchantia polymorpha HOM05D006787 ORTHO05D008366 1.0e-59 235.7 650 33.2
Mapoly0276s0001 Marchantia polymorpha HOM05D006787 ORTHO05D008366 1.0e-59 235.7 650 33.2
Pp3c3_28000 Physcomitrium patens HOM05D006787 ORTHO05D008366 7.7e-55 219.5 448 36.8
AagrBONN_evm.TU.Sc2ySwM_344.5468 Anthoceros agrestis HOM05D006787 ORTHO05D008366 2.0e-42 178.3 431 31.1
AagrBONN_evm.TU.Sc2ySwM_344.5464 Anthoceros agrestis HOM05D006787 ORTHO05D008366 3.7e-25 120.9 204 39.2
SMO137G0272 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 8.0e-20 103.2 206 37.9
BcaC04g19536 Brassica carinata HOM05D006787 ORTHO05D008366 1.4e-19 102.4 156 37.2
DCAR_027490 Daucus carota HOM05D004281 ORTHO05D004839 1.4e-16 92.4 120 45.8
VMungo0720G2947 Vigna mungo HOM05D006787 ORTHO05D008366 2.7e-15 88.2 160 37.5
SMO137G0070 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 4.3e-13 80.9 99 50.5
CBR_g41140 Chara braunii HOM05D006787 ORTHO05D008366 2.1e-12 78.6 188 28.7
SMO134G0111 Selaginella moellendorffii HOM05D006787 ORTHO05D008366 2.7e-07 61.6 135 37.8
PRCOL_00001133 Prasinoderma coloniale HOM05D006787 ORTHO05D008366 4.6e-07 60.8 106 36.8
Cre09.g389541 Chlamydomonas reinhardtii HOM05D006787 ORTHO05D008366 7.8e-07 60.1 90 34.4


User provided reference genes

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