Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 0.0e+00 1239.6 658 100.0
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 4.6e-73 280.0 579 41.1
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 1.1e-66 258.8 654 35.8
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 4.8e-62 243.4 646 36.2
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 7.6e-60 236.1 612 39.4
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.3e-59 235.3 677 37.5
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.9e-59 234.2 649 35.7
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 2.1e-57 228.0 655 35.4
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 4.5e-52 210.3 705 32.3
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.2e-51 208.0 435 38.9
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 5.5e-50 203.4 660 32.9
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 1.3e-48 198.7 648 35.0
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 7.4e-47 193.0 682 31.4
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.3e-46 192.2 686 32.7
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 8.2e-46 189.5 699 33.0
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 5.3e-45 186.8 415 38.3
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.5e-44 185.3 411 38.0
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.5e-44 183.7 698 30.8
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 1.0e-43 182.6 674 32.8
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 1.3e-43 182.2 414 37.4
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.8e-43 180.6 773 29.1
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 8.5e-43 179.5 773 29.1
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 1.9e-42 178.3 678 32.7
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 4.2e-42 177.2 858 31.5
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 5.5e-42 176.8 410 38.3
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 2.1e-41 174.9 549 33.7
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 6.7e-40 169.9 651 33.2
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 3.3e-39 167.5 376 38.6
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 5.7e-39 166.8 739 30.9
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 7.4e-39 166.4 682 31.1
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 4.8e-38 163.7 686 30.5
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 6.3e-38 163.3 762 31.0
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 6.3e-38 163.3 573 31.6
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 1.4e-37 162.2 699 29.8
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 3.1e-37 161.0 758 29.4
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 5.3e-37 160.2 650 30.8
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.3e-35 155.6 750 30.8
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 7.2e-34 149.8 482 35.5
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 9.4e-34 149.4 717 28.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 1.2e-33 149.1 409 34.7
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.1e-33 148.3 708 30.6
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 3.6e-33 147.5 706 29.7
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 1.8e-32 145.2 703 29.0
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 3.9e-32 144.1 476 33.8
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 1.1e-31 142.5 731 30.0
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.6e-31 141.4 697 29.1
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 3.3e-31 141.0 696 30.2
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 4.4e-31 140.6 687 30.3
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.7e-30 138.7 722 29.9
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 1.7e-30 138.7 692 29.5
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 2.2e-30 138.3 459 32.9
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.8e-29 135.2 704 29.5
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 2.4e-29 134.8 694 29.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 2.4e-29 134.8 694 29.8
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 3.1e-29 134.4 413 32.7
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 7.0e-29 133.3 701 30.0
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.2e-28 132.5 405 35.8
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.5e-28 131.0 747 29.3
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 3.5e-28 131.0 639 29.1
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 1.7e-27 128.6 410 32.4
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 1.7e-27 128.6 402 32.8
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.2e-27 128.3 436 33.7
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.5e-26 125.6 694 27.7
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 3.2e-26 124.4 640 29.7
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.1e-25 120.2 685 29.5
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 8.0e-25 119.8 698 28.9
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 1.0e-24 119.4 709 28.6
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 4.0e-24 117.5 427 32.8
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 4.0e-24 117.5 442 32.1
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 4.0e-24 117.5 420 32.6
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 2.6e-23 114.8 725 28.6
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 4.4e-23 114.0 654 28.7
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 5.7e-23 113.6 686 27.8
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 9.7e-23 112.8 378 31.0
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 2.2e-22 111.7 694 28.7
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 1.1e-21 109.4 605 26.9
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-21 109.0 687 29.1
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.4e-21 109.0 690 28.6
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 2.4e-21 108.2 685 29.1
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 2.4e-21 108.2 451 29.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 5.3e-21 107.1 645 27.4
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 9.1e-21 106.3 674 28.9
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 2.7e-20 104.8 656 27.9
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 3.5e-20 104.4 694 27.7
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 4.5e-20 104.0 667 27.6
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 5.9e-20 103.6 828 25.7
FvH4_7g29480 Fragaria vesca HOM05D013146 ORTHO05D004092 5.9e-20 103.6 491 32.8
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 1.7e-19 102.1 710 26.5
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 2.2e-19 101.7 688 27.6
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 1.1e-18 99.4 602 28.6
FAN06G3443 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.5e-18 99.0 488 32.0
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 1.5e-18 99.0 685 26.7
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 1.9e-18 98.6 679 27.0
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 7.2e-18 96.7 651 28.1
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.6e-17 95.5 685 27.6
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 2.1e-17 95.1 751 26.0
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.6e-17 94.4 130 49.2
Hund04742 Selenicereus undatus HOM05D004189 ORTHO05D004092 3.6e-17 94.4 183 42.6
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 6.1e-17 93.6 972 22.4
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 8.0e-17 93.2 695 26.8
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.8e-16 92.0 585 25.8
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.8e-16 92.0 342 28.1
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.3e-16 91.7 241 40.2
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 3.0e-16 91.3 200 38.5
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 4.0e-16 90.9 563 27.5
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.2e-16 90.5 607 25.9
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 1.2e-15 89.4 672 27.5
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 2.0e-15 88.6 322 32.3
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 1.3e-14 85.9 119 45.4
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 1.3e-14 85.9 616 25.2
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 2.2e-14 85.1 263 36.1
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 2.8e-14 84.7 753 25.8
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 2.8e-14 84.7 705 26.1
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 8.3e-14 83.2 711 26.4
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.1e-13 82.8 649 24.8
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 1.4e-13 82.4 301 30.6
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 1.8e-13 82.0 290 32.4
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 3.1e-13 81.3 160 38.8
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 5.4e-13 80.5 671 26.8
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 7.0e-13 80.1 368 29.3
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 9.1e-13 79.7 171 35.1
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 1.6e-12 79.0 589 25.5
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 3.5e-12 77.8 321 28.3
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 7.7e-12 76.6 441 27.0
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 5.0e-11 73.9 613 27.2
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 5.0e-11 73.9 505 27.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 8.6e-11 73.2 142 38.0
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 1.1e-10 72.8 561 25.8
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 1.9e-10 72.0 186 33.9
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 2.5e-10 71.6 143 39.2
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 4.2e-10 70.9 740 24.9
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 5.5e-10 70.5 623 25.0
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 7.2e-10 70.1 156 37.8
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 1.2e-09 69.3 372 25.5
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 1.6e-09 68.9 155 36.1
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 1.6e-09 68.9 625 24.3
ECA238G1893 Erigeron canadensis HOM05D004189 ORTHO05D004092 2.1e-09 68.6 310 28.4
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 2.1e-09 68.6 156 37.2
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 3.6e-09 67.8 294 28.9
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 2.3e-08 65.1 746 24.8
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 3.0e-08 64.7 696 25.6
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 3.0e-08 64.7 189 33.3
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.0e-08 64.3 406 23.9
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 6.8e-08 63.5 753 24.8
PGSC0003DMG400030008 Solanum tuberosum HOM05D004189 ORTHO05D004092 1.2e-07 62.8 112 35.7
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 1.5e-07 62.4 117 37.6
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 2.0e-07 62.0 728 24.6
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 3.4e-07 61.2 190 33.2
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 3.4e-07 61.2 701 25.1
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 4.4e-07 60.8 128 39.1
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 5.7e-07 60.5 759 24.1
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 7.5e-07 60.1 408 27.5
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 7.5e-07 60.1 165 38.2
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 3.7e-06 57.8 108 41.7
Solyc01g009660.3 Solanum lycopersicum HOM05D004189 ORTHO05D004092 4.9e-06 57.4 119 36.1


User provided reference genes

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