Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0007510 Simmondsia chinensis HOM05D007606 ORTHO05D009600 9.0e-49 197.6 99 100.0
MELO3C017454.2 Cucumis melo HOM05D007606 ORTHO05D009600 2.8e-34 149.4 104 74.0
CsaV3_1G031690 Cucumis sativus L. HOM05D007606 ORTHO05D009600 1.1e-33 147.5 104 74.0
Sed0005573 Sechium edule HOM05D007606 ORTHO05D009600 2.4e-33 146.4 104 75.0
FvH4_4g07990 Fragaria vesca HOM05D007606 ORTHO05D009600 5.3e-33 145.2 99 77.8
Glyma.17G062400 Glycine max HOM05D007606 ORTHO05D009600 9.0e-33 144.4 99 75.8
FAN07G2281 Fragaria x ananassa HOM05D007606 ORTHO05D009600 7.6e-32 141.4 96 75.0
RcHm_v2.0_Chr4g0401721 Rosa chinensis HOM05D007606 ORTHO05D009600 2.9e-31 139.4 96 75.0
EL10Ac8g18293 Beta vulgaris HOM05D007606 ORTHO05D009600 4.9e-31 138.7 110 68.2
Prupe.1G084400 Prunus persica HOM05D007606 ORTHO05D009600 4.9e-31 138.7 90 78.9
Potri.018G091300 Populus trichocarpa HOM05D007606 ORTHO05D009600 8.4e-31 137.9 106 68.9
CiPaw.07G193100 Carya illinoinensis HOM05D007606 ORTHO05D009600 1.4e-30 137.1 105 71.4
MD16G1256400 Malus domestica HOM05D007606 ORTHO05D009600 1.4e-30 137.1 90 78.9
PSO063G2142 Papaver somniferum HOM05D007606 ORTHO05D009600 1.4e-30 137.1 108 64.8
TWI32G0742 Tripterygium wilfordii HOM05D007606 ORTHO05D009600 1.4e-30 137.1 102 69.6
Medtr4g127860 Medicago truncatula HOM05D007606 ORTHO05D009600 3.2e-30 136.0 96 75.0
Sabra18G0078500 Salix brachista HOM05D007606 ORTHO05D009600 3.2e-30 136.0 106 67.9
THA.LOC104813519 Tarenaya hassleriana HOM05D007606 ORTHO05D009600 3.2e-30 136.0 98 75.5
FAN17G2268 Fragaria x ananassa HOM05D007606 ORTHO05D009600 4.2e-30 135.6 96 74.0
Glyma.13G097200 Glycine max HOM05D007606 ORTHO05D009600 4.2e-30 135.6 100 71.0
Ah.09g229950 Amaranthus hybridus HOM05D007606 ORTHO05D009600 1.6e-29 133.7 110 64.5
Manes.14G154600 Manihot esculenta HOM05D007606 ORTHO05D009600 1.6e-29 133.7 99 72.7
Nn5g27171 Nelumbo nucifera HOM05D007606 ORTHO05D009600 2.1e-29 133.3 99 70.7
Aqoxy7G03025 Aquilegia oxysepala HOM05D007606 ORTHO05D009600 2.7e-29 132.9 104 69.2
Actinidia01312 Actinidia chinensis HOM05D007606 ORTHO05D009600 3.5e-29 132.5 106 70.8
Rhsim03G0264900 Rhododendron simsii HOM05D007606 ORTHO05D009600 4.6e-29 132.1 100 70.0
MD13G1252200 Malus domestica HOM05D007606 ORTHO05D009600 6.0e-29 131.7 100 72.0
QL02p097943 Quercus lobata HOM05D007606 ORTHO05D009600 6.0e-29 131.7 107 67.3
Eucgr.C02351 Eucalyptus grandis HOM05D007606 ORTHO05D009600 7.9e-29 131.3 95 71.6
Gohir.D08G193500 Gossypium hirsutum HOM05D007606 ORTHO05D009600 7.9e-29 131.3 101 69.3
Atru.chr7.594 Acer truncatum HOM05D007606 ORTHO05D009600 1.8e-28 130.2 101 68.3
Cpa.g.sc523.4 Carica papaya HOM05D007606 ORTHO05D009600 1.8e-28 130.2 99 72.7
Aa31LG3G13250 Aethionema arabicum HOM05D007606 ORTHO05D009600 3.0e-28 129.4 109 66.1
COL.COLO4_37736 Corchorus olitorius HOM05D007606 ORTHO05D009600 5.1e-28 128.6 94 72.3
HanXRQChr12g0365451 Helianthus annuus HOM05D007606 ORTHO05D009600 8.7e-28 127.9 99 67.7
Carub.0008s1789 Capsella rubella HOM05D007606 ORTHO05D009600 1.5e-27 127.1 112 64.3
Lsat_1_v5_gn_8_67821 Lactuca sativa HOM05D007606 ORTHO05D009600 1.9e-27 126.7 95 68.4
TAR383G0717 Trochodendron aralioides HOM05D007606 ORTHO05D009600 1.9e-27 126.7 101 66.3
Phvul.003G144300 Phaseolus vulgaris HOM05D007606 ORTHO05D009600 2.5e-27 126.3 96 69.8
CANSAT11G0497 Cannabis sativa HOM05D007606 ORTHO05D009600 3.3e-27 125.9 97 72.2
Ciclev10009582m.g Citrus clementina HOM05D007606 ORTHO05D009600 3.3e-27 125.9 100 68.0
Gorai.004G203800 Gossypium raimondii HOM05D007606 ORTHO05D009600 7.4e-27 124.8 99 67.7
Hund26341 Selenicereus undatus HOM05D007606 ORTHO05D009600 9.6e-27 124.4 117 61.5
Sopen07g006820 Solanum pennellii HOM05D007606 ORTHO05D009600 2.8e-26 122.9 111 62.2
PGSC0003DMG400004088 Solanum tuberosum HOM05D007606 ORTHO05D009600 4.8e-26 122.1 110 63.6
AL8G33350 Arabidopsis lyrata HOM05D007606 ORTHO05D009600 6.2e-26 121.7 100 68.0
BolC2t07555H Brassica oleracea HOM05D007606 ORTHO05D009600 6.2e-26 121.7 103 65.0
CAN.G321.18 Capsicum annuum HOM05D007606 ORTHO05D009600 6.2e-26 121.7 96 70.8
BcaC03g14159 Brassica carinata HOM05D007606 ORTHO05D009600 1.8e-25 120.2 103 64.1
Sp6g19090 Schrenkiella parvula HOM05D007606 ORTHO05D009600 1.8e-25 120.2 103 65.0
AT5G57370 Arabidopsis thaliana HOM05D007606 ORTHO05D009600 2.4e-25 119.8 106 66.0
Hma1.2p1_1025F.1_g249400 Hydrangea macrophylla HOM05D007606 ORTHO05D009600 2.4e-25 119.8 70 87.1
BcaC04g19971 Brassica carinata HOM05D007606 ORTHO05D009600 4.0e-25 119.0 107 59.8
C09p49270 Brassica napus HOM05D007606 ORTHO05D009600 4.0e-25 119.0 107 59.8
BolC9t57778H Brassica oleracea HOM05D007606 ORTHO05D009600 4.0e-25 119.0 107 59.8
FAN12G2299 Fragaria x ananassa HOM05D007606 ORTHO05D009600 5.3e-25 118.6 85 75.3
Gohir.A08G174900 Gossypium hirsutum HOM05D007606 ORTHO05D009600 9.0e-25 117.9 103 63.1
PSO339G0750 Papaver somniferum HOM05D007606 ORTHO05D009600 9.0e-25 117.9 93 67.7
Psat4g012880 Pisum sativum HOM05D007606 ORTHO05D009600 9.0e-25 117.9 64 89.1
SHI02893 Sapria himalayana HOM05D007606 ORTHO05D009600 9.0e-25 117.9 91 65.9
BcaB05g22341 Brassica carinata HOM05D007606 ORTHO05D009600 1.2e-24 117.5 93 68.8
Duzib168G1965 Durio zibethinus HOM05D007606 ORTHO05D009600 1.2e-24 117.5 95 68.4
arahy.Tifrunner.gnm1.ann1.TB3R4X Arachis hypogaea HOM05D007606 ORTHO05D009600 2.0e-24 116.7 82 74.4
Lalb_Chr13g0300161 Lupinus albus HOM05D007606 ORTHO05D009600 2.0e-24 116.7 100 63.0
SEGI_36552 Sequoiadendron giganteum HOM05D007606 ORTHO05D009600 2.0e-24 116.7 96 63.5
CARHR271170 Cardamine hirsuta HOM05D007606 ORTHO05D009600 2.6e-24 116.3 106 63.2
Lj5P601T23 Lonicera japonica HOM05D007606 ORTHO05D009600 2.6e-24 116.3 97 63.9
C02p14290 Brassica napus HOM05D007606 ORTHO05D009600 1.0e-23 114.4 100 62.0
CSS0005882 Camellia sinensis var. sinensis HOM05D007606 ORTHO05D009600 1.3e-23 114.0 104 62.5
Os02g0461600 Oryza sativa ssp. japonica HOM05D007606 ORTHO05D009600 3.8e-23 112.5 98 62.2
HanXRQChr08g0212621 Helianthus annuus HOM05D007606 ORTHO05D009600 6.5e-23 111.7 97 62.9
Oeu025687.1 Olea europaea HOM05D007606 ORTHO05D009600 6.5e-23 111.7 62 87.1
FAN22G0657 Fragaria x ananassa HOM05D007606 ORTHO05D009600 8.4e-23 111.3 82 72.0
Thecc.09G175900 Theobroma cacao HOM05D007606 ORTHO05D009600 1.9e-22 110.2 93 65.6
HPP92_010764 Vanilla planifolia HOM05D007606 ORTHO05D009600 2.5e-22 109.8 109 55.0
GSVIVG01029223001 Vitis vinifera HOM05D007606 ORTHO05D009600 2.5e-22 109.8 64 84.4
A02p08550 Brassica napus HOM05D007606 ORTHO05D009600 3.2e-22 109.4 91 68.1
Cc06_g13140 Coffea canephora HOM05D007606 ORTHO05D009600 4.2e-22 109.0 74 78.4
Zm00001eb327770 Zea mays HOM05D007606 ORTHO05D009600 5.5e-22 108.6 69 78.3
MSTRG.6226 Avicennia marina HOM05D007606 ORTHO05D009600 1.2e-21 107.5 62 83.9
A10p14850 Brassica napus HOM05D007606 ORTHO05D009600 1.2e-21 107.5 60 86.7
BraA10t43563Z Brassica rapa HOM05D007606 ORTHO05D009600 1.2e-21 107.5 60 86.7
Migut.J01493 Erythranthe guttata HOM05D007606 ORTHO05D009600 1.6e-21 107.1 98 61.2
Nitab4.5_0000055g0310 Nicotiana tabacum HOM05D007606 ORTHO05D009600 2.1e-21 106.7 91 65.9
SGA_v2.0_scaffold66G22417 Striga asiatica HOM05D007606 ORTHO05D009600 2.7e-21 106.3 60 86.7
BraA02t05924Z Brassica rapa HOM05D007606 ORTHO05D009600 1.3e-20 104.0 98 62.2
Mapoly0026s0023 Marchantia polymorpha HOM05D007606 ORTHO05D009600 1.3e-20 104.0 114 54.4
AUR62021308 Chenopodium quinoa HOM05D007606 ORTHO05D009600 3.0e-20 102.8 51 96.1
Ca_21234_v3 Cicer arietinum L. HOM05D007606 ORTHO05D009600 3.9e-20 102.4 52 92.3
BcaB08g36096 Brassica carinata HOM05D007606 ORTHO05D009600 5.7e-19 98.6 60 83.3
Pp3c7_10050 Physcomitrium patens HOM05D007606 ORTHO05D009600 1.3e-18 97.4 87 59.8
AagrBONN_evm.TU.Sc2ySwM_362.441 Anthoceros agrestis HOM05D007606 ORTHO05D009600 2.2e-18 96.7 107 51.4
CBR_g51476 Chara braunii HOM05D007606 ORTHO05D009600 1.2e-16 90.9 62 72.6
SMO358G0723 Selaginella moellendorffii HOM05D007606 ORTHO05D009600 2.6e-16 89.7 79 62.0
Cre10.g465950 Chlamydomonas reinhardtii HOM05D007606 ORTHO05D009600 3.1e-09 66.2 100 42.0


User provided reference genes

Program Settings