Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006930 Simmondsia chinensis HOM05D004210 ORTHO05D005017 0.0e+00 1148.7 580 100.0
Dinv04121 Davidia involucrata HOM05D004210 ORTHO05D005017 8.9e-246 853.6 567 74.8
Hund00055 Selenicereus undatus HOM05D004210 ORTHO05D005017 2.1e-242 842.4 641 68.0
EL10Ac7g18124 Beta vulgaris HOM05D004210 ORTHO05D005017 8.9e-238 827.0 536 77.1
Thecc.10G122400 Theobroma cacao HOM05D004210 ORTHO05D005017 5.8e-237 824.3 563 72.8
Hund06390 Selenicereus undatus HOM05D004210 ORTHO05D005017 9.9e-237 823.5 540 75.9
CiPaw.14G037100 Carya illinoinensis HOM05D004210 ORTHO05D005017 2.4e-235 818.9 564 72.9
Duzib114G0085 Durio zibethinus HOM05D004210 ORTHO05D005017 5.4e-235 817.8 563 72.8
AUR62001320 Chenopodium quinoa HOM05D004210 ORTHO05D005017 9.2e-235 817.0 562 72.1
Nn5g30473 Nelumbo nucifera HOM05D004210 ORTHO05D005017 2.3e-233 812.4 565 71.3
COL.COLO4_16323 Corchorus olitorius HOM05D004210 ORTHO05D005017 5.1e-233 811.2 563 71.9
AUR62025703 Chenopodium quinoa HOM05D004210 ORTHO05D005017 1.1e-232 810.1 562 72.4
Cpa.g.sc138.49 Carica papaya HOM05D004210 ORTHO05D005017 1.2e-231 806.6 550 73.1
TAR376G0596 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.4e-230 803.1 567 71.6
Actinidia18370 Actinidia chinensis HOM05D004210 ORTHO05D005017 3.1e-230 802.0 534 73.4
Haze_03415 Corylus avellana HOM05D004210 ORTHO05D005017 3.1e-230 802.0 551 72.8
Nitab4.5_0001611g0030 Nicotiana tabacum HOM05D004210 ORTHO05D005017 4.0e-230 801.6 542 72.7
Gohir.A13G003500 Gossypium hirsutum HOM05D004210 ORTHO05D005017 1.2e-229 800.0 566 70.5
Manes.13G078700 Manihot esculenta HOM05D004210 ORTHO05D005017 2.0e-229 799.3 564 71.3
CANSAT56G1750 Cannabis sativa HOM05D004210 ORTHO05D005017 2.6e-229 798.9 522 74.3
FvH4_2g10510 Fragaria vesca HOM05D004210 ORTHO05D005017 3.4e-229 798.5 520 75.2
Potri.019G000900 Populus trichocarpa HOM05D004210 ORTHO05D005017 5.8e-229 797.7 541 72.8
Lj8A287G21 Lonicera japonica HOM05D004210 ORTHO05D005017 1.3e-228 796.6 563 70.5
Rhsim04G0193600 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.7e-228 796.2 518 74.9
FAN24G2713 Fragaria x ananassa HOM05D004210 ORTHO05D005017 2.9e-228 795.4 520 75.0
Potri.001G305500 Populus trichocarpa HOM05D004210 ORTHO05D005017 2.9e-228 795.4 563 71.2
ClCG05G022120 Citrullus lanatus HOM05D004210 ORTHO05D005017 6.4e-228 794.3 564 70.4
FAN20G0431 Fragaria x ananassa HOM05D004210 ORTHO05D005017 6.4e-228 794.3 520 75.0
Sabra16G0191800 Salix brachista HOM05D004210 ORTHO05D005017 6.4e-228 794.3 534 72.8
vmacro20845 Vaccinium macrocarpon HOM05D004210 ORTHO05D005017 8.4e-228 793.9 518 74.9
FAN15G0031 Fragaria x ananassa HOM05D004210 ORTHO05D005017 1.1e-227 793.5 520 74.6
MELO3C012312.2 Cucumis melo HOM05D004210 ORTHO05D005017 5.4e-227 791.2 564 69.7
FAN27G0821 Fragaria x ananassa HOM05D004210 ORTHO05D005017 5.4e-227 791.2 525 74.5
Prupe.5G058900 Prunus persica HOM05D004210 ORTHO05D005017 9.2e-227 790.4 522 75.3
CSS0018495 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 2.7e-226 788.9 552 71.7
Glyma.06G315900 Glycine max HOM05D004210 ORTHO05D005017 3.5e-226 788.5 545 72.3
CsaV3_5G035020 Cucumis sativus L. HOM05D004210 ORTHO05D005017 6.0e-226 787.7 564 69.7
Glyma.13G124200 Glycine max HOM05D004210 ORTHO05D005017 6.0e-226 787.7 545 71.9
Gorai.013G003300 Gossypium raimondii HOM05D004210 ORTHO05D005017 6.0e-226 787.7 566 70.0
Gohir.D13G003400 Gossypium hirsutum HOM05D004210 ORTHO05D005017 7.8e-226 787.3 566 70.0
RcHm_v2.0_Chr6g0268021 Rosa chinensis HOM05D004210 ORTHO05D005017 1.3e-225 786.6 520 74.0
Atru.chr10.436 Acer truncatum HOM05D004210 ORTHO05D005017 3.0e-225 785.4 550 71.1
Nitab4.5_0004014g0070 Nicotiana tabacum HOM05D004210 ORTHO05D005017 8.7e-225 783.9 533 72.4
Sabra19G0005800 Salix brachista HOM05D004210 ORTHO05D005017 1.5e-224 783.1 561 70.2
Peaxi162Scf00647g00139 Petunia axillaris HOM05D004210 ORTHO05D005017 3.3e-224 781.9 534 71.5
Sabra19G0014200 Salix brachista HOM05D004210 ORTHO05D005017 3.3e-224 781.9 561 70.1
Sed0024731 Sechium edule HOM05D004210 ORTHO05D005017 9.6e-224 780.4 548 69.7
PGR142G1915 Punica granatum HOM05D004210 ORTHO05D005017 2.1e-223 779.2 534 70.8
arahy.Tifrunner.gnm1.ann1.3JDG4T Arachis hypogaea HOM05D004210 ORTHO05D005017 3.6e-223 778.5 552 69.9
arahy.Tifrunner.gnm1.ann1.374KBL Arachis hypogaea HOM05D004210 ORTHO05D005017 1.4e-222 776.5 552 69.7
GSVIVG01018295001 Vitis vinifera HOM05D004210 ORTHO05D005017 1.4e-222 776.5 566 69.8
Ciclev10014800m.g Citrus clementina HOM05D004210 ORTHO05D005017 1.8e-222 776.2 545 71.2
MD07G1061200 Malus domestica HOM05D004210 ORTHO05D005017 2.4e-222 775.8 489 76.3
Phvul.008G161500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 4.0e-222 775.0 564 69.7
QL04p049870 Quercus lobata HOM05D004210 ORTHO05D005017 4.0e-222 775.0 479 77.2
Cc08_g06030 Coffea canephora HOM05D004210 ORTHO05D005017 1.5e-221 773.1 536 69.8
TPR.G14605 Trifolium pratense HOM05D004210 ORTHO05D005017 7.6e-221 770.8 564 67.7
Glyma.05G087400 Glycine max HOM05D004210 ORTHO05D005017 9.9e-221 770.4 551 69.9
Sed0005167 Sechium edule HOM05D004210 ORTHO05D005017 9.9e-221 770.4 564 69.3
arahy.Tifrunner.gnm1.ann1.A6SQAT Arachis hypogaea HOM05D004210 ORTHO05D005017 2.9e-220 768.8 552 68.8
Glyma.08G229800 Glycine max HOM05D004210 ORTHO05D005017 3.8e-220 768.5 564 68.3
MD02G1259400 Malus domestica HOM05D004210 ORTHO05D005017 3.8e-220 768.5 489 75.5
Phvul.003G276000 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 1.4e-219 766.5 565 68.5
TPR.G24022 Trifolium pratense HOM05D004210 ORTHO05D005017 7.8e-218 760.8 544 69.3
VMungo0251G3202 Vigna mungo HOM05D004210 ORTHO05D005017 7.8e-218 760.8 565 67.6
TAR625G1450 Trochodendron aralioides HOM05D004210 ORTHO05D005017 1.7e-217 759.6 542 71.8
Aqoxy1G00569 Aquilegia oxysepala HOM05D004210 ORTHO05D005017 3.3e-216 755.4 546 68.5
Medtr8g041740 Medicago truncatula HOM05D004210 ORTHO05D005017 9.6e-216 753.8 537 69.5
Lj3g0025560 Lotus japonicus HOM05D004210 ORTHO05D005017 2.8e-215 752.3 564 67.2
PGSC0003DMG400027522 Solanum tuberosum HOM05D004210 ORTHO05D005017 4.8e-215 751.5 543 69.1
MSTRG.20468 Avicennia marina HOM05D004210 ORTHO05D005017 8.1e-215 750.7 515 71.5
Sopen01g040660 Solanum pennellii HOM05D004210 ORTHO05D005017 6.9e-214 747.7 534 69.5
THA.LOC104804661 Tarenaya hassleriana HOM05D004210 ORTHO05D005017 9.0e-214 747.3 547 68.4
SalBow4G0418 Salvia bowleyana HOM05D004210 ORTHO05D005017 2.0e-213 746.1 532 68.4
Solyc01g096950.4 Solanum lycopersicum HOM05D004210 ORTHO05D005017 3.8e-212 741.9 534 69.1
Psat4g180480 Pisum sativum HOM05D004210 ORTHO05D005017 6.4e-212 741.1 539 68.8
Glyma.04G129500 Glycine max HOM05D004210 ORTHO05D005017 2.4e-211 739.2 487 73.9
Lalb_Chr01g0007661 Lupinus albus HOM05D004210 ORTHO05D005017 5.4e-211 738.0 561 67.2
HPP92_001742 Vanilla planifolia HOM05D004210 ORTHO05D005017 9.3e-211 737.3 545 68.1
Medtr8g045440 Medicago truncatula HOM05D004210 ORTHO05D005017 2.1e-210 736.1 565 66.2
Migut.B01123 Erythranthe guttata HOM05D004210 ORTHO05D005017 2.7e-210 735.7 531 69.3
PSO541G0139 Papaver somniferum HOM05D004210 ORTHO05D005017 3.5e-210 735.3 551 68.1
DCAR_002139 Daucus carota HOM05D004210 ORTHO05D005017 4.6e-210 734.9 557 65.9
Duzib106G1791 Durio zibethinus HOM05D004210 ORTHO05D005017 1.3e-209 733.4 526 70.5
Aa31LG8G7780 Aethionema arabicum HOM05D004210 ORTHO05D005017 3.0e-209 732.3 529 69.0
Hma1.2p1_0892F.1_g233380 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 1.9e-208 729.6 517 71.8
TAR381G0930 Trochodendron aralioides HOM05D004210 ORTHO05D005017 5.6e-208 728.0 469 74.0
Ca_05576_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 7.4e-208 727.6 582 63.6
AT3G21060 Arabidopsis thaliana HOM05D004210 ORTHO05D005017 1.3e-207 726.9 550 68.0
CDE04G1921 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 1.6e-207 726.5 566 65.9
Thhalv10020461m.g Eutrema salsugineum HOM05D004210 ORTHO05D005017 2.8e-207 725.7 567 65.3
Carub.0003s2096 Capsella rubella HOM05D004210 ORTHO05D005017 3.7e-207 725.3 565 65.5
Sp3g19020 Schrenkiella parvula HOM05D004210 ORTHO05D005017 8.1e-207 724.2 550 66.5
ECA248G0690 Erigeron canadensis HOM05D004210 ORTHO05D005017 4.0e-206 721.8 524 68.5
CDE07G1685 Ceratophyllum demersum HOM05D004210 ORTHO05D005017 2.2e-204 716.1 566 65.7
PSO478G0462 Papaver somniferum HOM05D004210 ORTHO05D005017 3.8e-204 715.3 549 66.5
Lalb_Chr18g0049111 Lupinus albus HOM05D004210 ORTHO05D005017 4.9e-204 714.9 562 63.9
Oeu012473.1 Olea europaea HOM05D004210 ORTHO05D005017 1.1e-203 713.8 488 71.1
Lsat_1_v5_gn_4_138820 Lactuca sativa HOM05D004210 ORTHO05D005017 1.4e-203 713.4 546 67.6
Sabra19G0013500 Salix brachista HOM05D004210 ORTHO05D005017 1.4e-203 713.4 512 70.1
Sabra19G0006000 Salix brachista HOM05D004210 ORTHO05D005017 7.1e-203 711.1 512 69.9
Psat4g200760 Pisum sativum HOM05D004210 ORTHO05D005017 6.0e-202 708.0 561 65.6
C01p43210 Brassica napus HOM05D004210 ORTHO05D005017 1.8e-201 706.4 548 66.1
BcaC09g49045 Brassica carinata HOM05D004210 ORTHO05D005017 2.3e-201 706.1 548 66.1
BraA01t03490Z Brassica rapa HOM05D004210 ORTHO05D005017 2.3e-201 706.1 545 65.3
BolC1t04267H Brassica oleracea HOM05D004210 ORTHO05D005017 6.7e-201 704.5 548 65.9
Medtr8g045463 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-200 703.7 526 66.2
Medtr8g045470 Medicago truncatula HOM05D004210 ORTHO05D005017 1.1e-200 703.7 526 66.2
VMungo0647G0038 Vigna mungo HOM05D004210 ORTHO05D005017 7.4e-200 701.0 529 68.1
CARHR096890 Cardamine hirsuta HOM05D004210 ORTHO05D005017 1.4e-198 696.8 550 65.3
BcaB04g20615 Brassica carinata HOM05D004210 ORTHO05D005017 1.5e-197 693.3 566 62.7
ATR0661G188 Amborella trichopoda HOM05D004210 ORTHO05D005017 1.7e-196 689.9 557 62.7
Oeu027040.1 Olea europaea HOM05D004210 ORTHO05D005017 2.1e-194 682.9 462 71.2
AL3G35010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.8e-193 679.9 548 64.6
Manes.13G077346 Manihot esculenta HOM05D004210 ORTHO05D005017 9.0e-190 667.5 405 78.0
Ca_13103_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 3.3e-184 649.0 578 59.0
SGA_v2.0_scaffold196G40978 Striga asiatica HOM05D004210 ORTHO05D005017 7.4e-184 647.9 547 60.3
HanXRQChr09g0259631 Helianthus annuus HOM05D004210 ORTHO05D005017 1.7e-183 646.7 566 62.7
Os03g0207900 Oryza sativa ssp. japonica HOM05D004210 ORTHO05D005017 2.6e-181 639.4 582 59.8
AL249U10010 Arabidopsis lyrata HOM05D004210 ORTHO05D005017 1.1e-179 634.0 402 73.9
A01p33790 Brassica napus HOM05D004210 ORTHO05D005017 1.4e-179 633.6 508 63.8
Zm00001eb007220 Zea mays HOM05D004210 ORTHO05D005017 8.8e-177 624.4 572 57.9
ECA238G3001 Erigeron canadensis HOM05D004210 ORTHO05D005017 1.2e-170 604.0 534 60.5
HanXRQChr14g0446551 Helianthus annuus HOM05D004210 ORTHO05D005017 1.2e-165 587.4 487 61.8
Psat2g059840 Pisum sativum HOM05D004210 ORTHO05D005017 1.5e-163 580.5 548 56.2
TWI75G1118 Tripterygium wilfordii HOM05D004210 ORTHO05D005017 2.0e-157 560.1 502 58.0
Eucgr.G02654 Eucalyptus grandis HOM05D004210 ORTHO05D005017 4.2e-155 552.4 438 63.9
Ca_24139_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 1.6e-154 550.4 564 54.4
Dinv30359 Davidia involucrata HOM05D004210 ORTHO05D005017 4.7e-154 548.9 378 73.5
Pp3c12_14420 Physcomitrium patens HOM05D004210 ORTHO05D005017 1.5e-152 543.9 554 51.8
Mapoly0028s0049 Marchantia polymorpha HOM05D004210 ORTHO05D005017 1.8e-150 537.0 555 52.4
Ca_24147_v3 Cicer arietinum L. HOM05D004210 ORTHO05D005017 7.8e-141 505.0 357 70.6
Lalb_Chr03g0032281 Lupinus albus HOM05D004210 ORTHO05D005017 2.3e-140 503.4 436 60.8
Phvul.011G184500 Phaseolus vulgaris HOM05D004210 ORTHO05D005017 9.8e-136 488.0 478 55.2
AagrBONN_evm.TU.Sc2ySwM_344.4521 Anthoceros agrestis HOM05D004210 ORTHO05D005017 1.1e-134 484.6 563 47.6
AagrBONN_evm.TU.Sc2ySwM_368.940 Anthoceros agrestis HOM05D004210 ORTHO05D005017 2.4e-134 483.4 581 46.6
unitig_26.g9497 Utricularia gibba HOM05D004210 ORTHO05D005017 6.8e-129 465.3 385 62.1
SMO145G0186 Selaginella moellendorffii HOM05D004210 ORTHO05D005017 2.0e-128 463.8 544 47.6
CSS0025743 Camellia sinensis var. sinensis HOM05D004210 ORTHO05D005017 1.2e-114 417.9 389 57.8
CBR_g18561 Chara braunii HOM05D004210 ORTHO05D005017 9.3e-102 375.2 594 40.2
CBR_g10843 Chara braunii HOM05D004210 ORTHO05D005017 2.8e-98 363.6 509 44.2
SEGI_20000 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 1.8e-97 360.9 306 55.6
Dinv18710 Davidia involucrata HOM05D004210 ORTHO05D005017 2.0e-96 357.5 338 58.6
Dinv18720 Davidia involucrata HOM05D004210 ORTHO05D005017 1.4e-70 271.6 165 80.6
MBI16_g14436_MAGBIO Magnolia biondii HOM05D004210 ORTHO05D005017 5.9e-64 249.6 311 48.6
Cre03.g195750 Chlamydomonas reinhardtii HOM05D004210 ORTHO05D005017 4.8e-58 229.9 461 32.8
SEGI_15684 Sequoiadendron giganteum HOM05D004210 ORTHO05D005017 6.3e-58 229.6 249 53.4
PRCOL_00000885 Prasinoderma coloniale HOM05D004210 ORTHO05D005017 3.3e-51 207.2 461 32.3
Pp3c4_7580 Physcomitrium patens HOM05D004210 ORTHO05D005017 3.5e-48 197.2 364 36.8
MCO03G571 Micromonas commoda HOM05D004210 ORTHO05D005017 1.5e-46 191.8 437 32.0
Atru.chr12.1163 Acer truncatum HOM05D004210 ORTHO05D005017 2.3e-44 184.5 91 93.4
Rhsim01G0121500 Rhododendron simsii HOM05D004210 ORTHO05D005017 1.2e-43 182.2 111 79.3
Glyma.12G171232 Glycine max HOM05D004210 ORTHO05D013328 2.8e-42 177.6 98 81.6
Cfa023087 Carpinus fangiana HOM05D004210 ORTHO05D005017 8.3e-42 176.0 412 31.1
Aa31LG8G7760 Aethionema arabicum HOM05D004210 ORTHO05D005017 6.5e-39 166.4 118 66.9
VMungo1127G1364 Vigna mungo HOM05D004210 ORTHO05D005017 7.2e-38 162.9 169 50.9
Manes.13G077544 Manihot esculenta HOM05D004210 ORTHO05D005017 2.6e-35 154.5 174 55.2
Atru.chr12.1162 Acer truncatum HOM05D004210 ORTHO05D005017 9.8e-35 152.5 149 59.7
Dinv18721 Davidia involucrata HOM05D004210 ORTHO05D005017 4.3e-30 137.1 105 64.8
Medtr5g069620 Medicago truncatula HOM05D004210 ORTHO05D005017 1.7e-23 115.2 86 61.6
Nn1g02745 Nelumbo nucifera HOM05D000508 ORTHO05D000371 2.3e-20 104.8 163 39.3
Hma1.2p1_0892F.1_g233370 Hydrangea macrophylla HOM05D004210 ORTHO05D005017 9.5e-14 82.8 40 87.5
Nn1g04650 Nelumbo nucifera HOM05D004210 ORTHO05D005017 3.1e-12 77.8 40 82.5
unitig_26.g9496 Utricularia gibba HOM05D004210 ORTHO05D005017 1.2e-11 75.9 48 68.8
Lalb_Chr03g0032271 Lupinus albus HOM05D004210 ORTHO05D005017 9.2e-09 66.2 32 87.5
SHI06412 Sapria himalayana HOM05D004210 ORTHO05D000023 9.2e-09 66.2 33 78.8
Medtr3g040320 Medicago truncatula HOM05D004210 ORTHO05D005017 3.5e-08 64.3 57 52.6
BcaC03g17042 Brassica carinata HOM05D000992 ORTHO05D001928 1.3e-07 62.4 241 26.1
C02p49570 Brassica napus HOM05D000992 ORTHO05D001928 1.3e-07 62.4 241 26.1
BolC2t11036H Brassica oleracea HOM05D000992 ORTHO05D001928 6.6e-07 60.1 241 25.3
HanXRQChr13g0402011 Helianthus annuus HOM05D002236 ORTHO05D002341 6.6e-07 60.1 360 22.8
A02p32000 Brassica napus HOM05D000992 ORTHO05D001928 1.5e-06 58.9 241 24.9
BraA02t08211Z Brassica rapa HOM05D000992 ORTHO05D001928 1.5e-06 58.9 241 24.9
AT5G50550 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 3.3e-06 57.8 241 24.5
AT5G50650 Arabidopsis thaliana HOM05D000992 ORTHO05D001928 3.3e-06 57.8 241 24.5
BcaB07g30396 Brassica carinata HOM05D000992 ORTHO05D001928 5.6e-06 57.0 241 24.9
Aa31LG2G8460 Aethionema arabicum HOM05D000992 ORTHO05D001928 7.3e-06 56.6 231 24.2
MCO03G131 Micromonas commoda HOM05D000992 ORTHO05D001928 7.3e-06 56.6 214 23.4
CARHR257330 Cardamine hirsuta HOM05D000992 ORTHO05D001928 9.5e-06 56.2 226 25.2


User provided reference genes

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