Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0006560 Simmondsia chinensis HOM05D000042 ORTHO05D023408 4.7e-62 241.1 130 100.0
Sc18g0006590 Simmondsia chinensis HOM05D000042 ORTHO05D023408 4.7e-38 161.4 105 85.7
Sc18g0006550 Simmondsia chinensis HOM05D000042 ORTHO05D001427 9.2e-26 120.6 76 88.2
EL10Ac9g21413 Beta vulgaris HOM05D000042 ORTHO05D001427 2.2e-19 99.4 129 51.2
AUR62013063 Chenopodium quinoa HOM05D000042 ORTHO05D023408 9.2e-18 94.0 130 46.9
AUR62010070 Chenopodium quinoa HOM05D000042 ORTHO05D023408 2.9e-11 72.4 59 62.7
Gohir.A13G051200 Gossypium hirsutum HOM05D000042 ORTHO05D001427 3.8e-11 72.0 79 51.9
Thecc.02G129600 Theobroma cacao HOM05D000042 ORTHO05D001427 4.9e-11 71.6 112 42.0
Gohir.D13G049800 Gossypium hirsutum HOM05D000042 ORTHO05D001427 1.9e-10 69.7 79 50.6
Peaxi162Scf00299g00717 Petunia axillaris HOM05D000042 ORTHO05D001427 3.2e-10 68.9 128 41.4
TAR381G1243 Trochodendron aralioides HOM05D000042 ORTHO05D001427 4.2e-10 68.6 135 37.0
Ah.01g022760 Amaranthus hybridus HOM05D000042 ORTHO05D023408 7.1e-10 67.8 59 59.3
COL.COLO4_32384 Corchorus olitorius HOM05D000042 ORTHO05D001427 7.1e-10 67.8 114 42.1
Gorai.013G055700 Gossypium raimondii HOM05D000042 ORTHO05D001427 7.1e-10 67.8 78 50.0
Potri.017G044200 Populus trichocarpa HOM05D000042 ORTHO05D001427 1.2e-09 67.0 123 39.8
QL06p035702 Quercus lobata HOM05D000042 ORTHO05D001427 1.2e-09 67.0 128 40.6
CARHR231940 Cardamine hirsuta HOM05D000042 ORTHO05D001427 1.6e-09 66.6 75 50.7
Dinv24150 Davidia involucrata HOM05D000042 ORTHO05D001427 1.6e-09 66.6 80 46.2
Glyma.08G068200 Glycine max HOM05D000042 ORTHO05D001427 1.6e-09 66.6 111 39.6
Sopen01g048260 Solanum pennellii HOM05D000042 ORTHO05D001427 1.6e-09 66.6 75 49.3
ECA246G4305 Erigeron canadensis HOM05D000042 ORTHO05D001427 2.1e-09 66.2 86 50.0
PGSC0003DMG400033570 Solanum tuberosum HOM05D000042 ORTHO05D001427 2.1e-09 66.2 75 48.0
Atru.chr6.1251 Acer truncatum HOM05D000042 ORTHO05D001427 2.7e-09 65.9 99 43.4
Dinv15994 Davidia involucrata HOM05D000042 ORTHO05D001427 2.7e-09 65.9 76 47.4
FAN23G1738 Fragaria x ananassa HOM05D000042 ORTHO05D001427 3.5e-09 65.5 129 43.4
Dinv09577 Davidia involucrata HOM05D000042 ORTHO05D001427 4.6e-09 65.1 112 35.7
FvH4_1g19710 Fragaria vesca HOM05D000042 ORTHO05D001427 4.6e-09 65.1 129 42.6
FAN19G2039 Fragaria x ananassa HOM05D000042 ORTHO05D001427 4.6e-09 65.1 129 42.6
BcaC09g50857 Brassica carinata HOM05D000042 ORTHO05D001427 6.0e-09 64.7 123 40.7
C01p19850 Brassica napus HOM05D000076 ORTHO05D003143 6.0e-09 64.7 95 44.2
BolC1t01913H Brassica oleracea HOM05D000042 ORTHO05D001427 6.0e-09 64.7 95 44.2
PGR102G1134 Punica granatum HOM05D000042 ORTHO05D001427 6.0e-09 64.7 94 41.5
EL10Ac9g22075 Beta vulgaris HOM05D000042 ORTHO05D001427 7.8e-09 64.3 114 42.1
QL11p024294 Quercus lobata HOM05D000042 ORTHO05D001427 7.8e-09 64.3 74 48.6
Manes.07G038600 Manihot esculenta HOM05D000042 ORTHO05D001427 1.0e-08 63.9 75 50.7
Nn5g29891 Nelumbo nucifera HOM05D000042 ORTHO05D001427 1.0e-08 63.9 75 48.0
Potri.017G044500 Populus trichocarpa HOM05D000042 ORTHO05D001427 1.0e-08 63.9 76 47.4
C07p53640 Brassica napus HOM05D000042 ORTHO05D017220 1.3e-08 63.5 96 42.7
MD01G1038600 Malus domestica HOM05D000042 ORTHO05D001427 1.3e-08 63.5 127 35.4
Sc03g0000300 Simmondsia chinensis HOM05D000042 ORTHO05D001427 1.3e-08 63.5 81 44.4
BraA01t01524Z Brassica rapa HOM05D000076 ORTHO05D003143 1.7e-08 63.2 75 48.0
Duzib052G1115 Durio zibethinus HOM05D000042 ORTHO05D001427 1.7e-08 63.2 76 50.0
Nn1g05562 Nelumbo nucifera HOM05D000042 ORTHO05D001427 1.7e-08 63.2 119 37.0
Oeu029679.2 Olea europaea HOM05D000042 ORTHO05D001427 1.7e-08 63.2 116 40.5
Oeu046544.1 Olea europaea HOM05D000042 ORTHO05D001427 1.7e-08 63.2 91 44.0
vmacro01856 Vaccinium macrocarpon HOM05D000042 ORTHO05D001427 1.7e-08 63.2 109 41.3
Atru.chr3.1252 Acer truncatum HOM05D000042 ORTHO05D001427 2.3e-08 62.8 135 37.0
Thhalv10026757m.g Eutrema salsugineum HOM05D000042 ORTHO05D001427 2.3e-08 62.8 75 46.7
Gohir.D02G200900 Gossypium hirsutum HOM05D000042 ORTHO05D001427 2.3e-08 62.8 76 51.3
AL7G28670 Arabidopsis lyrata HOM05D000042 ORTHO05D001427 3.0e-08 62.4 75 45.3
MSTRG.3735 Avicennia marina HOM05D000042 ORTHO05D001427 3.0e-08 62.4 128 39.1
BcaC06g32877 Brassica carinata HOM05D000042 ORTHO05D001427 3.0e-08 62.4 123 39.0
A03p55360 Brassica napus HOM05D000042 ORTHO05D001427 3.0e-08 62.4 95 42.1
BraA03t14595Z Brassica rapa HOM05D000042 ORTHO05D001427 3.0e-08 62.4 95 42.1
HanXRQChr15g0495861 Helianthus annuus HOM05D000042 ORTHO05D001427 3.0e-08 62.4 123 38.2
A01p15900 Brassica napus HOM05D000076 ORTHO05D003143 3.9e-08 62.0 95 43.2
Phvul.002G212450 Phaseolus vulgaris HOM05D000042 ORTHO05D001427 3.9e-08 62.0 111 37.8
BolC7t45857H Brassica oleracea HOM05D000042 ORTHO05D001427 5.1e-08 61.6 95 42.1
Carub.0007s1653 Capsella rubella HOM05D000042 ORTHO05D001427 5.1e-08 61.6 122 39.3
CAN.G523.13 Capsicum annuum HOM05D000042 ORTHO05D001427 5.1e-08 61.6 74 45.9
Ciclev10026457m.g Citrus clementina HOM05D000042 ORTHO05D001427 5.1e-08 61.6 119 42.9
Phvul.006G202300 Phaseolus vulgaris HOM05D000042 ORTHO05D001427 5.1e-08 61.6 107 38.3
QL11p024222 Quercus lobata HOM05D000042 ORTHO05D001427 5.1e-08 61.6 118 38.1
Sp7g22540 Schrenkiella parvula HOM05D000042 ORTHO05D001427 5.1e-08 61.6 122 39.3
CSS0037110 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D001427 6.6e-08 61.2 75 48.0
RcHm_v2.0_Chr2g0111271 Rosa chinensis HOM05D000042 ORTHO05D001427 6.6e-08 61.2 129 41.1
GSVIVG01005934001 Vitis vinifera HOM05D000042 ORTHO05D001427 6.6e-08 61.2 127 34.6
Aa31LG4G9640 Aethionema arabicum HOM05D000042 ORTHO05D001427 8.7e-08 60.8 82 46.3
Duzib132G0894 Durio zibethinus HOM05D000042 ORTHO05D001427 8.7e-08 60.8 76 47.4
ClCG01G018380 Citrullus lanatus HOM05D000042 ORTHO05D001427 1.1e-07 60.5 129 37.2
Ciclev10029491m.g Citrus clementina HOM05D000042 ORTHO05D001427 1.1e-07 60.5 128 39.1
Manes.10G099000 Manihot esculenta HOM05D000042 ORTHO05D001427 1.1e-07 60.5 75 46.7
Peaxi162Scf00454g00519 Petunia axillaris HOM05D000042 ORTHO05D001427 1.1e-07 60.5 75 46.7
Cfa006887 Carpinus fangiana HOM05D000042 ORTHO05D001427 1.5e-07 60.1 127 40.9
FAN26G0879 Fragaria x ananassa HOM05D000042 ORTHO05D001427 1.5e-07 60.1 75 48.0
Gohir.A03G177200 Gossypium hirsutum HOM05D000042 ORTHO05D001427 1.5e-07 60.1 76 50.0
Sed0027590 Sechium edule HOM05D000042 ORTHO05D001427 1.5e-07 60.1 74 48.6
THA.LOC104799797 Tarenaya hassleriana HOM05D000042 ORTHO05D001427 1.5e-07 60.1 75 45.3
TWI23G1028 Tripterygium wilfordii HOM05D000042 ORTHO05D001427 1.5e-07 60.1 83 45.8
Lsat_1_v5_gn_2_70640 Lactuca sativa HOM05D000042 ORTHO05D001427 1.9e-07 59.7 111 35.1
Prupe.1G531600 Prunus persica HOM05D000042 ORTHO05D001427 1.9e-07 59.7 75 45.3
Sabra17G0030200 Salix brachista HOM05D000042 ORTHO05D001427 1.9e-07 59.7 76 44.7
AT4G24540 Arabidopsis thaliana HOM05D000042 ORTHO05D001427 2.5e-07 59.3 122 36.1
CSS0008173 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D001427 2.5e-07 59.3 75 44.0
Duzib248G1604 Durio zibethinus HOM05D000042 ORTHO05D001427 2.5e-07 59.3 76 44.7
Prupe.6G199000 Prunus persica HOM05D000042 ORTHO05D001427 2.5e-07 59.3 75 46.7
Cc02_g20960 Coffea canephora HOM05D000042 ORTHO05D001427 3.3e-07 58.9 82 39.0
Haze_03866 Corylus avellana HOM05D000042 ORTHO05D001427 3.3e-07 58.9 118 38.1
ECA232G2784 Erigeron canadensis HOM05D000042 ORTHO05D001427 3.3e-07 58.9 114 35.1
PSO170G2966 Papaver somniferum HOM05D000042 ORTHO05D001427 3.3e-07 58.9 94 40.4
THA.LOC104806856 Tarenaya hassleriana HOM05D000042 ORTHO05D001427 3.3e-07 58.9 76 42.1
Atru.chr13.1018 Acer truncatum HOM05D000042 ORTHO05D001427 4.3e-07 58.5 75 44.0
CSS0003691 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D001427 4.3e-07 58.5 121 39.7
CiPaw.07G047900 Carya illinoinensis HOM05D000042 ORTHO05D001427 4.3e-07 58.5 129 38.8
Potri.007G115100 Populus trichocarpa HOM05D000042 ORTHO05D001427 4.3e-07 58.5 76 47.4
Sed0017033 Sechium edule HOM05D000042 ORTHO05D001427 4.3e-07 58.5 127 35.4
THA.LOC104801710 Tarenaya hassleriana HOM05D000042 ORTHO05D001427 4.3e-07 58.5 75 44.0
CAN.G475.33 Capsicum annuum HOM05D000042 ORTHO05D001427 5.6e-07 58.2 91 41.8
ECA238G2163 Erigeron canadensis HOM05D000042 ORTHO05D001427 5.6e-07 58.2 125 37.6
Gorai.005G225500 Gossypium raimondii HOM05D000042 ORTHO05D001427 5.6e-07 58.2 76 48.7
Lalb_Chr09g0326011 Lupinus albus HOM05D000042 ORTHO05D001427 5.6e-07 58.2 108 40.7
PSO017G0006 Papaver somniferum HOM05D000042 ORTHO05D001427 5.6e-07 58.2 94 39.4
QL11p024586 Quercus lobata HOM05D000042 ORTHO05D001427 5.6e-07 58.2 74 45.9
Sabra07G0008300 Salix brachista HOM05D000042 ORTHO05D001427 5.6e-07 58.2 89 39.3
Cpa.g.sc21.11 Carica papaya HOM05D000042 ORTHO05D001427 7.3e-07 57.8 75 45.3
MELO3C007716.2 Cucumis melo HOM05D000042 ORTHO05D001427 7.3e-07 57.8 129 36.4
CsaV3_6G045010 Cucumis sativus L. HOM05D000042 ORTHO05D001427 7.3e-07 57.8 129 36.4
TWI56G0539 Tripterygium wilfordii HOM05D000042 ORTHO05D001427 7.3e-07 57.8 75 44.0
CSS0000974 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D001427 9.6e-07 57.4 116 37.1
CSS0010938 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D001427 9.6e-07 57.4 116 37.1
Solyc04g076280.4 Solanum lycopersicum HOM05D000042 ORTHO05D001427 9.6e-07 57.4 75 45.3
Solyc11g010570.2 Solanum lycopersicum HOM05D000042 ORTHO05D001427 9.6e-07 57.4 75 44.0
TWI12G1419 Tripterygium wilfordii HOM05D000042 ORTHO05D001427 9.6e-07 57.4 75 44.0
Actinidia10277 Actinidia chinensis HOM05D000042 ORTHO05D001427 1.3e-06 57.0 75 44.0
Duzib093G0029 Durio zibethinus HOM05D000042 ORTHO05D001427 1.3e-06 57.0 75 42.7
Eucgr.I00556 Eucalyptus grandis HOM05D000042 ORTHO05D001427 1.3e-06 57.0 134 35.1
HanXRQChr09g0270841 Helianthus annuus HOM05D000042 ORTHO05D001427 1.3e-06 57.0 125 37.6
Lalb_Chr05g0216321 Lupinus albus HOM05D000042 ORTHO05D001427 1.3e-06 57.0 127 37.0
Thecc.01G091300 Theobroma cacao HOM05D000042 ORTHO05D001427 1.3e-06 57.0 82 42.7
TAR376G0963 Trochodendron aralioides HOM05D000042 ORTHO05D001427 1.3e-06 57.0 134 34.3
Aa31LG7G14270 Aethionema arabicum HOM05D000042 ORTHO05D001427 1.6e-06 56.6 96 39.6
Cpa.g.sc55.31 Carica papaya HOM05D000042 ORTHO05D001427 1.6e-06 56.6 113 35.4
CiPaw.08G055400 Carya illinoinensis HOM05D000042 ORTHO05D001427 1.6e-06 56.6 75 45.3
FAN28G2287 Fragaria x ananassa HOM05D000042 ORTHO05D001427 1.6e-06 56.6 75 46.7
Hma1.2p1_1093F.1_g256190 Hydrangea macrophylla HOM05D000042 ORTHO05D001427 1.6e-06 56.6 119 37.8
Potri.005G155300 Populus trichocarpa HOM05D000042 ORTHO05D001427 1.6e-06 56.6 75 44.0
PGR142G2000 Punica granatum HOM05D000042 ORTHO05D001427 1.6e-06 56.6 106 37.7
QL09p017707 Quercus lobata HOM05D000042 ORTHO05D001427 1.6e-06 56.6 89 40.4
Thecc.08G070300 Theobroma cacao HOM05D000042 ORTHO05D001427 1.6e-06 56.6 75 44.0
Aqoxy5G01303 Aquilegia oxysepala HOM05D000042 ORTHO05D001427 2.1e-06 56.2 116 34.5
Duzib264G0661 Durio zibethinus HOM05D000042 ORTHO05D001427 2.1e-06 56.2 78 43.6
ECA232G3000 Erigeron canadensis HOM05D000042 ORTHO05D001427 2.1e-06 56.2 76 42.1
Lj4g0022839 Lotus japonicus HOM05D000042 ORTHO05D001427 2.1e-06 56.2 111 35.1
Lalb_Chr10g0102741 Lupinus albus HOM05D000042 ORTHO05D001427 2.1e-06 56.2 75 44.0
Prupe.1G531700 Prunus persica HOM05D000042 ORTHO05D001427 2.1e-06 56.2 75 42.7
Sopen11g005370 Solanum pennellii HOM05D000042 ORTHO05D001427 2.1e-06 56.2 75 42.7
CANSAT01G0086 Cannabis sativa HOM05D000042 ORTHO05D001427 2.8e-06 55.8 122 38.5
ClCG10G009620 Citrullus lanatus HOM05D000042 ORTHO05D001427 2.8e-06 55.8 75 46.7
Haze_10537 Corylus avellana HOM05D000869 ORTHO05D000685 2.8e-06 55.8 73 43.8
CsaV3_2G030300 Cucumis sativus L. HOM05D000042 ORTHO05D001427 2.8e-06 55.8 75 45.3
Migut.H02293 Erythranthe guttata HOM05D000042 ORTHO05D001427 2.8e-06 55.8 91 41.8
Glyma.02G041500 Glycine max HOM05D000042 ORTHO05D001427 2.8e-06 55.8 108 39.8
Gohir.D12G081800 Gossypium hirsutum HOM05D000042 ORTHO05D001427 2.8e-06 55.8 114 38.6
Gorai.008G092300 Gossypium raimondii HOM05D000042 ORTHO05D001427 2.8e-06 55.8 114 38.6
Potri.007G115000 Populus trichocarpa HOM05D000042 ORTHO05D001427 2.8e-06 55.8 118 36.4
Sed0022681 Sechium edule HOM05D000042 ORTHO05D001427 2.8e-06 55.8 75 48.0
PGSC0003DMG400009363 Solanum tuberosum HOM05D000042 ORTHO05D001427 2.8e-06 55.8 75 45.3
Duzib147G0199 Durio zibethinus HOM05D000042 ORTHO05D001427 3.6e-06 55.5 128 34.4
Glyma.07G181600 Glycine max HOM05D000042 ORTHO05D001427 3.6e-06 55.5 111 36.0
Gohir.A12G084200 Gossypium hirsutum HOM05D000042 ORTHO05D001427 3.6e-06 55.5 114 38.6
Hund00035 Selenicereus undatus HOM05D008449 ORTHO05D010615 3.6e-06 55.5 60 53.3
Solyc01g105800.4 Solanum lycopersicum HOM05D000042 ORTHO05D001427 3.6e-06 55.5 70 45.7
TWI59G0072 Tripterygium wilfordii HOM05D000042 ORTHO05D001427 3.6e-06 55.5 86 40.7
Actinidia01161 Actinidia chinensis HOM05D000042 ORTHO05D001427 4.8e-06 55.1 120 37.5
FvH4_4g27110 Fragaria vesca HOM05D000042 ORTHO05D001427 4.8e-06 55.1 75 45.3
HanXRQChr10g0278101 Helianthus annuus HOM05D000042 ORTHO05D001427 4.8e-06 55.1 68 50.0
TAR625G0300 Trochodendron aralioides HOM05D000042 ORTHO05D001427 4.8e-06 55.1 135 31.9
arahy.Tifrunner.gnm1.ann1.D3LV4V Arachis hypogaea HOM05D000042 ORTHO05D001427 6.2e-06 54.7 111 36.9
arahy.Tifrunner.gnm1.ann1.SGD688 Arachis hypogaea HOM05D000042 ORTHO05D001427 6.2e-06 54.7 111 36.9
Manes.18G059200 Manihot esculenta HOM05D000042 ORTHO05D001427 6.2e-06 54.7 137 33.6
Potri.002G105600 Populus trichocarpa HOM05D000042 ORTHO05D001427 6.2e-06 54.7 136 33.8
Phvul.002G147600 Phaseolus vulgaris HOM05D000042 ORTHO05D001427 8.1e-06 54.3 134 35.8
GSVIVG01009171001 Vitis vinifera HOM05D000042 ORTHO05D001427 8.1e-06 54.3 135 32.6


User provided reference genes

Program Settings