Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 5.2e-299 1030.4 567 100.0
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 4.6e-154 548.9 565 58.9
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 1.7e-140 503.8 563 51.5
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.0e-134 482.6 566 52.8
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 1.7e-132 477.2 570 54.2
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 1.7e-132 477.2 581 49.9
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 2.9e-132 476.5 566 53.2
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.9e-132 476.5 566 52.1
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 3.8e-132 476.1 559 52.8
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 1.4e-131 474.2 568 54.9
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 1.4e-131 474.2 567 54.7
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.9e-131 473.8 568 52.8
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 7.1e-131 471.9 565 52.6
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 7.1e-131 471.9 566 51.8
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 7.1e-131 471.9 566 52.5
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 1.0e-129 468.0 571 50.4
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 1.9e-128 463.8 565 50.3
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 4.0e-126 456.1 562 52.5
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 1.3e-124 451.1 569 48.2
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 2.9e-124 449.9 566 48.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 3.2e-123 446.4 577 47.0
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 4.2e-123 446.0 574 51.4
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 4.2e-123 446.0 574 50.0
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 5.5e-123 445.7 562 48.9
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 2.7e-122 443.4 543 49.7
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 2.7e-122 443.4 565 51.7
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 1.0e-121 441.4 568 47.9
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 1.8e-121 440.7 549 51.2
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 2.5e-120 436.8 569 50.3
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 3.3e-120 436.4 543 52.5
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 4.3e-120 436.0 542 49.8
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 9.6e-120 434.9 562 48.0
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 2.1e-119 433.7 572 46.9
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 2.1e-119 433.7 566 45.9
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 4.8e-119 432.6 572 47.0
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 1.4e-118 431.0 566 51.2
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 5.3e-118 429.1 568 51.1
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 1.5e-117 427.6 573 48.5
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 7.6e-117 425.2 570 50.9
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 1.3e-116 424.5 568 50.0
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 1.7e-116 424.1 536 47.0
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 2.2e-116 423.7 609 45.8
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.2e-116 423.7 543 49.0
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 2.9e-116 423.3 589 47.0
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 3.8e-116 422.9 585 47.7
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 3.8e-116 422.9 598 44.0
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 5.0e-116 422.5 566 47.3
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 6.5e-116 422.2 535 51.0
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 6.5e-116 422.2 535 51.0
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 8.4e-116 421.8 547 49.7
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 1.1e-115 421.4 566 47.2
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.4e-115 421.0 567 50.1
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 2.5e-115 420.2 581 44.4
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 9.3e-115 418.3 565 47.8
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 1.6e-114 417.5 575 49.2
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 2.1e-114 417.2 625 45.3
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 4.6e-114 416.0 569 47.5
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 7.9e-114 415.2 565 48.5
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 7.9e-114 415.2 572 47.7
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 1.3e-113 414.5 571 46.4
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.3e-113 413.7 549 50.3
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.0e-113 413.3 603 46.3
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 3.9e-113 412.9 586 48.3
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 6.7e-113 412.1 538 45.2
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 1.5e-112 411.0 570 48.4
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 1.5e-112 411.0 566 50.4
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 2.5e-112 410.2 570 46.3
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 2.8e-111 406.8 592 47.6
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 4.8e-111 406.0 591 47.7
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.1e-110 403.3 603 45.6
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 6.9e-110 402.1 564 45.2
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 9.0e-110 401.7 560 44.6
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 2.0e-109 400.6 570 48.9
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 5.9e-109 399.1 559 43.8
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 3.8e-108 396.4 586 43.7
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 2.5e-107 393.7 585 46.0
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 5.5e-107 392.5 560 44.5
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 2.7e-106 390.2 568 42.4
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.3e-105 387.1 571 45.2
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 2.3e-105 387.1 574 44.8
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 2.3e-105 387.1 570 44.4
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 3.0e-105 386.7 570 46.0
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 6.7e-105 385.6 572 45.1
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 2.0e-104 384.0 558 44.3
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 2.5e-104 383.6 569 47.5
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 8.2e-103 378.6 558 44.1
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 2.4e-102 377.1 541 42.0
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 2.4e-102 377.1 570 43.9
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 4.1e-102 376.3 554 43.1
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.6e-101 373.6 566 41.9
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 3.4e-101 373.2 559 44.5
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 5.9e-101 372.5 540 43.0
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 5.9e-101 372.5 504 44.8
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 1.3e-100 371.3 581 43.9
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 2.9e-100 370.2 454 47.1
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 2.5e-99 367.1 607 44.8
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 3.9e-97 359.8 454 50.0
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 5.1e-97 359.4 532 48.5
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 6.7e-97 359.0 492 45.7
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 4.8e-95 352.8 547 44.2
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 6.1e-90 335.9 519 46.2
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.5e-88 331.3 595 39.8
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 4.1e-86 323.2 573 41.9
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 5.3e-86 322.8 332 52.1
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 2.7e-85 320.5 573 39.4
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 3.5e-85 320.1 307 52.1
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 5.9e-85 319.3 565 40.7
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 9.4e-83 312.0 481 41.4
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.2e-82 311.6 509 40.1
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 2.1e-82 310.8 727 34.4
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 2.3e-81 307.4 583 38.4
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 3.4e-80 303.5 327 49.5
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 2.8e-79 300.4 554 38.4
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 2.1e-74 284.3 420 52.4
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 1.0e-73 282.0 533 37.1
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 8.3e-71 272.3 649 33.7
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 8.3e-71 272.3 274 51.8
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 2.9e-63 247.3 606 34.8
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.9e-63 247.3 544 33.3
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 1.6e-58 231.5 494 37.4
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 4.0e-57 226.9 554 32.7
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 7.0e-54 216.1 659 29.0
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 2.7e-53 214.2 220 50.9
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 5.0e-52 209.9 673 28.8
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 9.8e-48 195.7 526 34.2
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 6.4e-47 193.0 278 37.4
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 3.4e-40 170.6 142 59.2
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 3.9e-36 157.1 171 50.3
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 6.8e-33 146.4 292 31.5
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 2.9e-31 141.0 561 26.6
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 4.2e-30 137.1 278 30.9
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.7e-29 134.4 493 24.5
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 1.4e-25 122.1 174 44.8
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 6.9e-25 119.8 156 51.9
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.1e-22 112.5 293 27.6
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 4.2e-22 110.5 129 47.3
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.2e-16 92.4 162 33.3
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 5.8e-16 90.1 86 53.5
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 5.8e-16 90.1 86 53.5
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 6.7e-12 76.6 93 47.3
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 4.3e-11 73.9 131 39.7
Cfa026542 Carpinus fangiana HOM05D005537 ORTHO05D124841 5.5e-06 57.0 115 35.7


User provided reference genes

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