Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0002580 Simmondsia chinensis HOM05D000811 ORTHO05D004743 5.0e-34 147.1 71 100.0
Sc16g0002050 Simmondsia chinensis HOM05D000811 ORTHO05D004743 4.0e-15 84.3 68 64.7
Actinidia31003 Actinidia chinensis HOM05D000811 ORTHO05D004743 2.9e-13 78.2 42 88.1
Oeu062504.1 Olea europaea HOM05D000811 ORTHO05D004743 2.9e-13 78.2 42 88.1
Rhsim08G0034300 Rhododendron simsii HOM05D000811 ORTHO05D007840 2.9e-13 78.2 42 88.1
arahy.Tifrunner.gnm1.ann1.T1352T Arachis hypogaea HOM05D000811 ORTHO05D004743 3.7e-13 77.8 68 58.8
Dinv40074 Davidia involucrata HOM05D000811 ORTHO05D004743 6.4e-13 77.0 67 59.7
Oeu035303.1 Olea europaea HOM05D000811 ORTHO05D004743 6.4e-13 77.0 42 85.7
Hund14039 Selenicereus undatus HOM05D000811 ORTHO05D004743 6.4e-13 77.0 66 62.1
vmacro18420 Vaccinium macrocarpon HOM05D000811 ORTHO05D004743 6.4e-13 77.0 42 85.7
SGA_v2.0_scaffold32G13256 Striga asiatica HOM05D000811 ORTHO05D004743 8.3e-13 76.6 42 85.7
Prupe.1G202600 Prunus persica HOM05D000811 ORTHO05D004743 1.1e-12 76.3 42 85.7
PGR102G1785 Punica granatum HOM05D000811 ORTHO05D004743 1.1e-12 76.3 42 85.7
SGA_v2.0_scaffold58G20433 Striga asiatica HOM05D000811 ORTHO05D004743 1.1e-12 76.3 42 85.7
vmacro17410 Vaccinium macrocarpon HOM05D000811 ORTHO05D004743 1.9e-12 75.5 47 74.5
AT2G18040 Arabidopsis thaliana HOM05D000811 ORTHO05D004743 2.4e-12 75.1 68 58.8
arahy.Tifrunner.gnm1.ann1.66CB8L Arachis hypogaea HOM05D000811 ORTHO05D004743 2.4e-12 75.1 42 83.3
arahy.Tifrunner.gnm1.ann1.LCWP3I Arachis hypogaea HOM05D000811 ORTHO05D004743 2.4e-12 75.1 42 83.3
CSS0015066 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 2.4e-12 75.1 42 83.3
CSS0031839 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 2.4e-12 75.1 42 83.3
Dinv33618 Davidia involucrata HOM05D000811 ORTHO05D004743 2.4e-12 75.1 42 83.3
Eucgr.J02408 Eucalyptus grandis HOM05D000811 ORTHO05D004743 2.4e-12 75.1 42 83.3
FAN05G0499 Fragaria x ananassa HOM05D000811 ORTHO05D004743 2.4e-12 75.1 68 55.9
Potri.007G013400 Populus trichocarpa HOM05D000811 ORTHO05D004743 2.4e-12 75.1 68 55.9
TAR628G0680 Trochodendron aralioides HOM05D000811 ORTHO05D004743 2.4e-12 75.1 42 83.3
Aa31LG8G15220 Aethionema arabicum HOM05D000811 ORTHO05D004743 3.2e-12 74.7 46 78.3
CSS0030860 Camellia sinensis var. sinensis HOM05D000811 ORTHO05D004743 3.2e-12 74.7 42 83.3
CiPaw.07G057300 Carya illinoinensis HOM05D000811 ORTHO05D004743 3.2e-12 74.7 57 66.7
MELO3C016378.2 Cucumis melo HOM05D000811 ORTHO05D004743 3.2e-12 74.7 68 55.9
Gohir.A10G097900 Gossypium hirsutum HOM05D000811 ORTHO05D004743 3.2e-12 74.7 42 78.6
HanXRQChr15g0482841 Helianthus annuus HOM05D000811 ORTHO05D004743 3.2e-12 74.7 50 72.0
Manes.01G144800 Manihot esculenta HOM05D000811 ORTHO05D004743 3.2e-12 74.7 42 81.0
QL06p033570 Quercus lobata HOM05D000811 ORTHO05D004743 3.2e-12 74.7 41 82.9
Sopen02g013220 Solanum pennellii HOM05D000811 ORTHO05D004743 3.2e-12 74.7 50 74.0
ClCG07G008440 Citrullus lanatus HOM05D000811 ORTHO05D004743 4.1e-12 74.3 68 54.4
MBI05_g26504_MAGBIO Magnolia biondii HOM05D000811 ORTHO05D004743 4.1e-12 74.3 42 83.3
Peaxi162Scf00799g00517 Petunia axillaris HOM05D000811 ORTHO05D004743 4.1e-12 74.3 68 58.8
CDE09G0022 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 5.4e-12 73.9 42 81.0
Hma1.2p1_0258F.1_g104200 Hydrangea macrophylla HOM05D000811 ORTHO05D004743 5.4e-12 73.9 40 82.5
Manes.02G103000 Manihot esculenta HOM05D000811 ORTHO05D004743 5.4e-12 73.9 42 81.0
PSO170G2420 Papaver somniferum HOM05D000811 ORTHO05D004743 5.4e-12 73.9 42 83.3
PSO210G3301 Papaver somniferum HOM05D000811 ORTHO05D004743 5.4e-12 73.9 42 83.3
Solyc02g062250.3 Solanum lycopersicum HOM05D000811 ORTHO05D004743 5.4e-12 73.9 42 83.3
PGSC0003DMG400019933 Solanum tuberosum HOM05D000811 ORTHO05D004743 5.4e-12 73.9 42 83.3
THA.LOC104819758 Tarenaya hassleriana HOM05D000811 ORTHO05D004743 5.4e-12 73.9 68 57.4
TAR625G0006 Trochodendron aralioides HOM05D000811 ORTHO05D004743 5.4e-12 73.9 50 74.0
COL.COLO4_21930 Corchorus olitorius HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 81.0
Duzib187G1507 Durio zibethinus HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 81.0
Gohir.D11G044800 Gossypium hirsutum HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 78.6
Gorai.007G048100 Gossypium raimondii HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 78.6
Nn6g32304 Nelumbo nucifera HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 83.3
Hund16485 Selenicereus undatus HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 83.3
TAR381G1630 Trochodendron aralioides HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 81.0
GSVIVG01018801001 Vitis vinifera HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 81.0
Zm00001eb067280 Zea mays HOM05D000811 ORTHO05D004743 7.1e-12 73.6 42 81.0
AL3G51190 Arabidopsis lyrata HOM05D000811 ORTHO05D004743 9.2e-12 73.2 68 57.4
Carub.0003s3219 Capsella rubella HOM05D000811 ORTHO05D004743 9.2e-12 73.2 68 57.4
Cpa.g.sc6.231 Carica papaya HOM05D000811 ORTHO05D004743 9.2e-12 73.2 42 78.6
Cc07_g10610 Coffea canephora HOM05D000811 ORTHO05D004743 9.2e-12 73.2 42 78.6
CsaV3_4G005720 Cucumis sativus L. HOM05D000811 ORTHO05D004743 9.2e-12 73.2 68 52.9
Sp3g31470 Schrenkiella parvula HOM05D000811 ORTHO05D004743 9.2e-12 73.2 68 57.4
Sed0008902 Sechium edule HOM05D000811 ORTHO05D004743 9.2e-12 73.2 65 56.9
Thecc.01G020900 Theobroma cacao HOM05D000811 ORTHO05D004743 9.2e-12 73.2 42 81.0
CARHR108530 Cardamine hirsuta HOM05D000811 ORTHO05D004743 1.2e-11 72.8 68 57.4
CiPaw.08G132800 Carya illinoinensis HOM05D000811 ORTHO05D004743 1.2e-11 72.8 42 81.0
Duzib147G0350 Durio zibethinus HOM05D000811 ORTHO05D004743 1.2e-11 72.8 42 81.0
Lj4A217G58 Lonicera japonica HOM05D000811 ORTHO05D004743 1.2e-11 72.8 42 81.0
MD08G1077500 Malus domestica HOM05D000811 ORTHO05D004743 1.2e-11 72.8 42 81.0
SalBow3G3608 Salvia bowleyana HOM05D000811 ORTHO05D004743 1.2e-11 72.8 42 81.0
TAR376G0878 Trochodendron aralioides HOM05D000811 ORTHO05D004743 1.2e-11 72.8 42 81.0
CDE02G4615 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 78.6
Ciclev10026785m.g Citrus clementina HOM05D000811 ORTHO05D004743 1.6e-11 72.4 68 51.5
Haze_03791 Corylus avellana HOM05D000811 ORTHO05D004743 1.6e-11 72.4 43 76.7
Migut.H01149 Erythranthe guttata HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 81.0
FvH4_6g24550 Fragaria vesca HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 78.6
FAN02G2932 Fragaria x ananassa HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 78.6
FAN09G3320 Fragaria x ananassa HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 78.6
Gohir.D10G090300 Gossypium hirsutum HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 76.2
Gorai.011G099300 Gossypium raimondii HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 76.2
Oeu060412.1 Olea europaea HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 78.6
RcHm_v2.0_Chr3g0483651 Rosa chinensis HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 78.6
Sed0024520 Sechium edule HOM05D000811 ORTHO05D004743 1.6e-11 72.4 68 54.4
HPP92_002102 Vanilla planifolia HOM05D000811 ORTHO05D004743 1.6e-11 72.4 42 76.2
MSTRG.2701 Avicennia marina HOM05D000811 ORTHO05D004743 2.1e-11 72.0 42 81.0
A06p33380 Brassica napus HOM05D000811 ORTHO05D004743 2.1e-11 72.0 68 55.9
CAN.G1365.1 Capsicum annuum HOM05D000811 ORTHO05D004743 2.1e-11 72.0 42 78.6
Migut.B00125 Erythranthe guttata HOM05D000811 ORTHO05D004743 2.1e-11 72.0 42 76.2
Thhalv10022913m.g Eutrema salsugineum HOM05D000811 ORTHO05D004743 2.1e-11 72.0 68 55.9
Rhsim05G0067500 Rhododendron simsii HOM05D000811 ORTHO05D004743 2.1e-11 72.0 42 76.2
Cfa006960 Carpinus fangiana HOM05D000811 ORTHO05D007840 2.7e-11 71.6 42 78.6
ECA246G0760 Erigeron canadensis HOM05D000811 ORTHO05D004743 2.7e-11 71.6 42 78.6
HanXRQChr14g0441311 Helianthus annuus HOM05D000811 ORTHO05D004743 2.7e-11 71.6 42 81.0
Lalb_Chr05g0229881 Lupinus albus HOM05D000811 ORTHO05D004743 2.7e-11 71.6 42 81.0
C03p58940 Brassica napus HOM05D000811 ORTHO05D004743 3.5e-11 71.2 68 55.9
BolC3t18151H Brassica oleracea HOM05D000811 ORTHO05D004743 3.5e-11 71.2 68 55.9
Glyma.16G129900 Glycine max HOM05D000811 ORTHO05D004743 3.5e-11 71.2 40 82.5
Lsat_1_v5_gn_2_78761 Lactuca sativa HOM05D000811 ORTHO05D004743 3.5e-11 71.2 41 80.5
Lalb_Chr16g0391191 Lupinus albus HOM05D000811 ORTHO05D004743 3.5e-11 71.2 40 82.5
MSTRG.5435 Avicennia marina HOM05D000811 ORTHO05D004743 4.6e-11 70.9 42 76.2
Glyma.02G049500 Glycine max HOM05D000811 ORTHO05D004743 4.6e-11 70.9 40 80.0
HPP92_003523 Vanilla planifolia HOM05D000811 ORTHO05D004743 4.6e-11 70.9 68 54.4
Actinidia27847 Actinidia chinensis HOM05D000811 ORTHO05D004743 6.0e-11 70.5 42 78.6
AagrBONN_evm.TU.Sc2ySwM_228.1572 Anthoceros agrestis HOM05D000811 ORTHO05D004743 6.0e-11 70.5 68 51.5
Aqoxy5G01449 Aquilegia oxysepala HOM05D000811 ORTHO05D004743 6.0e-11 70.5 42 76.2
EL10As8g23839 Beta vulgaris HOM05D000811 ORTHO05D004743 6.0e-11 70.5 42 81.0
BcaB03g16590 Brassica carinata HOM05D000811 ORTHO05D004743 6.0e-11 70.5 68 54.4
BcaB08g34786 Brassica carinata HOM05D000811 ORTHO05D004743 6.0e-11 70.5 68 54.4
CAN.G1329.5 Capsicum annuum HOM05D000811 ORTHO05D004743 6.0e-11 70.5 42 71.4
Ca_22371_v3 Cicer arietinum L. HOM05D000811 ORTHO05D004743 6.0e-11 70.5 42 76.2
ECA238G1572 Erigeron canadensis HOM05D000811 ORTHO05D004743 6.0e-11 70.5 68 54.4
MD04G1047200 Malus domestica HOM05D000811 ORTHO05D004743 6.0e-11 70.5 42 78.6
Nn5g29274 Nelumbo nucifera HOM05D000811 ORTHO05D004743 6.0e-11 70.5 42 78.6
Psat4g098480 Pisum sativum HOM05D000811 ORTHO05D004743 6.0e-11 70.5 40 80.0
unitig_699.g19711 Utricularia gibba HOM05D000811 ORTHO05D004743 6.0e-11 70.5 42 76.2
CDE05G3463 Ceratophyllum demersum HOM05D000811 ORTHO05D004743 7.8e-11 70.1 42 76.2
Nitab4.5_0001133g0070 Nicotiana tabacum HOM05D000811 ORTHO05D004743 7.8e-11 70.1 42 78.6
Nitab4.5_0006862g0010 Nicotiana tabacum HOM05D000811 ORTHO05D004743 7.8e-11 70.1 42 78.6
THA.LOC104807488 Tarenaya hassleriana HOM05D000811 ORTHO05D004743 7.8e-11 70.1 68 54.4
Ah.03g141760 Amaranthus hybridus HOM05D000811 ORTHO05D004743 1.0e-10 69.7 42 76.2
BraA06t26271Z Brassica rapa HOM05D000811 ORTHO05D004743 1.3e-10 69.3 42 76.2
FAN14G0683 Fragaria x ananassa HOM05D000811 ORTHO05D004743 1.3e-10 69.3 42 76.2
Nitab4.5_0002096g0060 Nicotiana tabacum HOM05D000811 ORTHO05D004743 1.3e-10 69.3 40 77.5
Sabra07G0010400 Salix brachista HOM05D000811 ORTHO05D004743 1.3e-10 69.3 42 73.8
Solyc01g110530.3 Solanum lycopersicum HOM05D000811 ORTHO05D004743 1.3e-10 69.3 42 73.8
Sopen01g052660 Solanum pennellii HOM05D000811 ORTHO05D004743 1.3e-10 69.3 42 73.8
PGSC0003DMG400001617 Solanum tuberosum HOM05D000811 ORTHO05D004743 1.3e-10 69.3 42 73.8
Pp3c20_23120 Physcomitrium patens HOM05D000811 ORTHO05D004743 1.7e-10 68.9 42 73.8
TWI09G0609 Tripterygium wilfordii HOM05D000811 ORTHO05D004743 1.7e-10 68.9 42 73.8
TWI53G1676 Tripterygium wilfordii HOM05D000811 ORTHO05D004743 1.7e-10 68.9 42 73.8
ATR0147G012 Amborella trichopoda HOM05D000811 ORTHO05D004743 2.3e-10 68.6 42 76.2
Duzib264G0600 Durio zibethinus HOM05D000811 ORTHO05D004743 2.3e-10 68.6 42 69.0
Lj4g0014424 Lotus japonicus HOM05D000811 ORTHO05D004743 2.3e-10 68.6 40 77.5
Lsat_1_v5_gn_3_74081 Lactuca sativa HOM05D000811 ORTHO05D004743 3.0e-10 68.2 40 75.0
Phvul.003G260800 Phaseolus vulgaris HOM05D000811 ORTHO05D004743 3.0e-10 68.2 48 68.8
BcaC06g36361 Brassica carinata HOM05D000811 ORTHO05D004743 3.9e-10 67.8 42 73.8
C07p04900 Brassica napus HOM05D000811 ORTHO05D004743 3.9e-10 67.8 42 73.8
BolC7t40891H Brassica oleracea HOM05D000811 ORTHO05D004743 3.9e-10 67.8 42 73.8
BraA07t28059Z Brassica rapa HOM05D000811 ORTHO05D004743 3.9e-10 67.8 42 73.8
Medtr8g076070 Medicago truncatula HOM05D000811 ORTHO05D004743 5.1e-10 67.4 42 73.8
Pp3c10_25090 Physcomitrium patens HOM05D000811 ORTHO05D004743 5.1e-10 67.4 42 71.4
Zm00001eb419950 Zea mays HOM05D000811 ORTHO05D004743 5.1e-10 67.4 42 71.4
Zm00001eb106800 Zea mays HOM05D000811 ORTHO05D004743 8.6e-10 66.6 41 75.6
Os04g0118500 Oryza sativa ssp. japonica HOM05D000811 ORTHO05D004743 1.1e-09 66.2 42 71.4
BolC6t36506H Brassica oleracea HOM05D000811 ORTHO05D004743 1.5e-09 65.9 69 55.1
TPR.G30057 Trifolium pratense HOM05D000811 ORTHO05D004743 1.5e-09 65.9 66 56.1
C06p13450 Brassica napus HOM05D000811 ORTHO05D004743 1.9e-09 65.5 69 53.6
AUR62043613 Chenopodium quinoa HOM05D000811 ORTHO05D004743 1.9e-09 65.5 40 77.5
AUR62044455 Chenopodium quinoa HOM05D000811 ORTHO05D004743 1.9e-09 65.5 40 77.5
Actinidia00122 Actinidia chinensis HOM05D000811 ORTHO05D004743 2.5e-09 65.1 40 75.0
CBR_g552 Chara braunii HOM05D000811 ORTHO05D004743 4.3e-09 64.3 40 67.5
SMO146G0274 Selaginella moellendorffii HOM05D000811 ORTHO05D004743 1.6e-08 62.4 42 66.7
Os04g0663800 Oryza sativa ssp. japonica HOM05D000811 ORTHO05D004743 4.7e-08 60.8 42 66.7
Cre16.g671900 Chlamydomonas reinhardtii HOM05D000811 ORTHO05D004743 8.1e-08 60.1 42 61.9
MCO04G419 Micromonas commoda HOM05D000811 ORTHO05D004743 1.4e-07 59.3 42 61.9
PRCOL_00002510 Prasinoderma coloniale HOM05D009714 ORTHO05D004743 3.1e-07 58.2 54 53.7
Nitab4.5_0010885g0050 Nicotiana tabacum HOM05D000811 ORTHO05D004743 4.0e-07 57.8 33 75.8
Dinv23445 Davidia involucrata HOM05D000586 ORTHO05D003356 1.2e-06 56.2 32 78.1
Haze_26720 Corylus avellana HOM05D000811 ORTHO05D004743 3.4e-06 54.7 42 59.5


User provided reference genes

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