Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 4.5e-192 674.5 356 100.0
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 1.8e-124 449.9 371 64.4
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.5e-123 446.8 370 65.1
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 5.1e-111 405.2 417 56.4
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 1.4e-108 397.1 366 60.1
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 4.7e-96 355.5 366 57.7
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 1.7e-93 347.1 384 57.0
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 6.3e-93 345.1 382 56.5
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.1e-92 344.4 379 57.0
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 2.4e-92 343.2 414 53.6
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 9.1e-92 341.3 375 57.3
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 8.5e-90 334.7 366 57.7
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.5e-89 334.0 367 55.3
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.2e-88 330.9 379 52.8
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 1.6e-88 330.5 393 54.2
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 8.0e-88 328.2 369 53.1
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 1.8e-87 327.0 382 55.5
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 2.3e-87 326.6 398 54.3
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 4.0e-87 325.9 377 53.3
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 4.0e-87 325.9 379 54.1
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 4.0e-87 325.9 370 57.0
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 1.5e-86 323.9 382 54.7
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 1.1e-84 317.8 384 52.1
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 4.5e-83 312.4 395 55.9
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 3.8e-82 309.3 363 54.8
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.5e-81 307.4 383 52.2
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 1.9e-81 307.0 358 56.7
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 4.2e-81 305.8 376 52.4
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 8.8e-79 298.1 373 53.4
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 2.6e-78 296.6 358 52.2
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 3.4e-78 296.2 316 55.4
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 1.7e-77 293.9 376 54.8
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 2.4e-76 290.0 315 59.7
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 2.4e-76 290.0 414 51.0
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 5.4e-76 288.9 319 59.6
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 5.4e-76 288.9 380 49.2
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 7.0e-76 288.5 389 51.4
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 3.5e-75 286.2 359 52.1
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 1.0e-74 284.6 522 41.0
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 2.3e-74 283.5 339 54.3
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 3.8e-74 282.7 370 50.8
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 7.3e-73 278.5 391 52.4
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 1.2e-72 277.7 391 48.1
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 2.1e-72 276.9 391 48.3
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 2.1e-72 276.9 339 53.7
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 2.8e-72 276.6 363 54.0
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 2.8e-72 276.6 363 54.0
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 6.1e-72 275.4 307 59.3
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 8.0e-72 275.0 314 55.1
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 1.2e-70 271.2 311 58.2
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 2.0e-70 270.4 306 57.8
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 4.4e-70 269.2 364 51.6
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 1.3e-69 267.7 354 51.4
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 3.7e-69 266.2 366 50.3
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 8.3e-69 265.0 364 50.0
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 1.1e-68 264.6 313 51.8
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.1e-68 264.6 359 49.3
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 5.4e-68 262.3 400 46.2
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 9.2e-68 261.5 392 45.9
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 9.2e-68 261.5 357 51.0
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.2e-67 261.2 392 46.2
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 3.5e-67 259.6 356 52.2
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.0e-66 258.1 363 49.9
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.3e-66 256.9 319 53.9
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 1.2e-64 251.1 399 48.9
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.8e-63 247.3 374 48.1
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 6.8e-63 245.4 302 53.3
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 2.2e-61 240.4 368 46.7
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 4.9e-61 239.2 383 44.1
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 1.9e-60 237.3 311 55.0
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 4.1e-60 236.1 366 45.4
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 9.2e-60 235.0 383 45.4
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 1.0e-58 231.5 394 44.7
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 6.6e-58 228.8 331 46.5
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 1.5e-57 227.6 371 46.9
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 2.5e-57 226.9 452 39.8
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 5.6e-57 225.7 301 53.5
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 1.8e-55 220.7 390 41.8
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 2.3e-55 220.3 341 47.5
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 3.1e-55 219.9 314 48.4
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 4.0e-55 219.5 326 46.9
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 5.2e-55 219.2 372 44.9
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 8.9e-55 218.4 457 44.2
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 1.2e-51 208.0 240 58.3
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 4.6e-51 206.1 389 44.7
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 3.0e-50 203.4 392 41.3
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 6.6e-50 202.2 278 46.0
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 8.6e-50 201.8 342 44.2
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 1.1e-49 201.4 304 43.8
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 6.8e-47 192.2 392 40.8
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 3.4e-46 189.9 382 42.1
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 7.1e-44 182.2 389 40.9
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 9.2e-44 181.8 390 42.6
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 4.6e-43 179.5 310 43.2
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 4.6e-43 179.5 224 51.3
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 6.0e-43 179.1 313 42.5
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 1.6e-40 171.0 301 42.9
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 2.8e-40 170.2 372 40.6
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.1e-39 168.3 174 55.7
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 5.2e-39 166.0 464 35.3
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 9.9e-38 161.8 232 46.1
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 2.2e-37 160.6 377 40.8
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 1.9e-36 157.5 324 41.0
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 9.3e-36 155.2 362 39.0
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 3.5e-35 153.3 365 39.2
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 1.0e-34 151.8 354 40.4
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 1.7e-34 151.0 324 43.5
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 3.0e-34 150.2 194 44.8
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 6.2e-32 142.5 369 36.9
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 4.0e-31 139.8 275 45.1
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 6.9e-31 139.0 325 40.6
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 1.2e-30 138.3 375 36.5
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 1.2e-30 138.3 375 36.5
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 1.9e-28 131.0 351 39.6
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 5.4e-28 129.4 236 41.1
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 6.0e-27 125.9 310 37.1
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 1.5e-25 121.3 304 36.2
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 5.6e-25 119.4 316 35.8
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 3.1e-23 113.6 389 32.9
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 2.9e-21 107.1 289 37.0
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 2.4e-20 104.0 379 32.2
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 2.7e-19 100.5 279 34.4
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 8.7e-18 95.5 366 33.3
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.7e-16 90.1 308 35.1
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 7.6e-14 82.4 311 34.4
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 5.5e-12 76.3 133 39.1
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 5.5e-12 76.3 302 32.1
Lsat_1_v5_gn_5_102961 Lactuca sativa HOM05D005514 ORTHO05D006563 2.7e-11 73.9 59 67.8
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.3e-10 71.6 77 55.8
Oeu064594.1 Olea europaea HOM05D005514 ORTHO05D006563 5.7e-09 66.2 58 65.5
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 9.6e-09 65.5 235 31.9
MD15G1181500 Malus domestica HOM05D005514 ORTHO05D006563 9.6e-09 65.5 69 55.1
Cc06_g09940 Coffea canephora HOM05D005514 ORTHO05D006563 1.6e-08 64.7 71 62.0
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 2.1e-08 64.3 37 70.3
Thecc.09G355700 Theobroma cacao HOM05D002034 ORTHO05D006399 4.1e-07 60.1 43 58.1
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 4.1e-07 60.1 43 60.5
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 5.3e-07 59.7 43 60.5
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 6.9e-07 59.3 44 63.6
COL.COLO4_34822 Corchorus olitorius HOM05D005514 ORTHO05D006563 6.9e-07 59.3 74 62.2
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 6.9e-07 59.3 43 60.5
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 1.2e-06 58.5 42 64.3
BcaC03g14089 Brassica carinata HOM05D002034 ORTHO05D006399 1.5e-06 58.2 43 60.5
C02p13300 Brassica napus HOM05D002034 ORTHO05D006399 1.5e-06 58.2 43 60.5
BolC2t07445H Brassica oleracea HOM05D002034 ORTHO05D006399 1.5e-06 58.2 43 60.5
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 1.5e-06 58.2 43 60.5
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 1.5e-06 58.2 43 60.5
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 2.0e-06 57.8 40 62.5
Oeu064670.1 Olea europaea HOM05D002034 ORTHO05D006399 2.0e-06 57.8 44 63.6
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 2.6e-06 57.4 40 62.5
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 4.5e-06 56.6 42 59.5
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 4.5e-06 56.6 42 59.5
Nitab4.5_0004155g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.5e-06 56.6 44 61.4
Nitab4.5_0006148g0010 Nicotiana tabacum HOM05D002034 ORTHO05D006399 4.5e-06 56.6 44 61.4
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 4.5e-06 56.6 27 77.8
Sopen06g033600 Solanum pennellii HOM05D002034 ORTHO05D006399 4.5e-06 56.6 44 61.4
Cfa011758 Carpinus fangiana HOM05D002034 ORTHO05D006399 5.9e-06 56.2 42 59.5
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 5.9e-06 56.2 43 60.5
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 5.9e-06 56.2 44 59.1
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 5.9e-06 56.2 47 57.4
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 5.9e-06 56.2 43 60.5
Cc01_g14710 Coffea canephora HOM05D000417 ORTHO05D000342 7.6e-06 55.8 42 59.5
Lalb_Chr17g0345341 Lupinus albus HOM05D002034 ORTHO05D006399 7.6e-06 55.8 42 57.1
MD03G1060300 Malus domestica HOM05D002034 ORTHO05D006399 7.6e-06 55.8 43 55.8
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 7.6e-06 55.8 27 77.8
Peaxi162Scf00390g00821 Petunia axillaris HOM05D002034 ORTHO05D006399 7.6e-06 55.8 43 62.8
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 7.6e-06 55.8 43 58.1
PGSC0003DMG400030374 Solanum tuberosum HOM05D002034 ORTHO05D006399 7.6e-06 55.8 43 62.8
arahy.Tifrunner.gnm1.ann1.60GRLQ Arachis hypogaea HOM05D002034 ORTHO05D006399 1.0e-05 55.5 42 57.1
arahy.Tifrunner.gnm1.ann1.S7G6UF Arachis hypogaea HOM05D002034 ORTHO05D006399 1.0e-05 55.5 42 57.1
C09p50360 Brassica napus HOM05D002034 ORTHO05D006399 1.0e-05 55.5 42 59.5
CSS0049450 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 1.0e-05 55.5 43 58.1


User provided reference genes

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