Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc18g0000870 Simmondsia chinensis HOM05D001408 ORTHO05D001312 4.6e-41 170.6 77 100.0
FAN28G0235 Fragaria x ananassa HOM05D001408 ORTHO05D001312 5.5e-18 94.0 139 38.8
Cfa003326 Carpinus fangiana HOM05D001408 ORTHO05D001312 2.1e-17 92.0 164 35.4
Haze_25636 Corylus avellana HOM05D001408 ORTHO05D001312 2.1e-17 92.0 164 35.4
Sc23g0004840 Simmondsia chinensis HOM05D001408 ORTHO05D001312 4.6e-17 90.9 164 34.8
PGR102G1977 Punica granatum HOM05D001408 ORTHO05D001312 7.9e-17 90.1 164 34.8
Cpa.g.sc334.3 Carica papaya HOM05D001408 ORTHO05D001312 1.0e-16 89.7 164 34.1
Prupe.7G237300 Prunus persica HOM05D001408 ORTHO05D001312 1.0e-16 89.7 164 34.8
QL02p087153 Quercus lobata HOM05D001408 ORTHO05D001312 1.0e-16 89.7 163 34.4
AUR62011065 Chenopodium quinoa HOM05D001408 ORTHO05D001312 1.3e-16 89.4 163 35.0
AUR62033442 Chenopodium quinoa HOM05D001408 ORTHO05D001312 1.3e-16 89.4 163 35.0
ClCG06G010750 Citrullus lanatus HOM05D001408 ORTHO05D001312 1.8e-16 89.0 164 34.1
Hund09161 Selenicereus undatus HOM05D001408 ORTHO05D001312 2.3e-16 88.6 164 34.1
THA.LOC104809010 Tarenaya hassleriana HOM05D001408 ORTHO05D001312 2.3e-16 88.6 164 34.8
CiPaw.03G239100 Carya illinoinensis HOM05D001408 ORTHO05D001312 3.0e-16 88.2 164 34.1
MD02G1038000 Malus domestica HOM05D001408 ORTHO05D001312 3.0e-16 88.2 164 34.1
RcHm_v2.0_Chr2g0089431 Rosa chinensis HOM05D001408 ORTHO05D001312 3.0e-16 88.2 164 34.1
MBI01_g34146_MAGBIO Magnolia biondii HOM05D001408 ORTHO05D001312 3.9e-16 87.8 164 34.1
EL10Ac8g18583 Beta vulgaris HOM05D001408 ORTHO05D001312 5.1e-16 87.4 164 34.8
CsaV3_1G029630 Cucumis sativus L. HOM05D001408 ORTHO05D001312 5.1e-16 87.4 164 33.5
MBI01_g44858_MAGBIO Magnolia biondii HOM05D001408 ORTHO05D001312 5.1e-16 87.4 165 33.9
Dinv36576 Davidia involucrata HOM05D001408 ORTHO05D001312 6.7e-16 87.0 164 33.5
MD15G1178300 Malus domestica HOM05D001408 ORTHO05D001312 8.7e-16 86.7 164 34.1
Sed0024294 Sechium edule HOM05D001408 ORTHO05D001312 8.7e-16 86.7 164 32.9
Ah.14g080940 Amaranthus hybridus HOM05D001408 ORTHO05D001312 1.1e-15 86.3 164 34.1
FvH4_1g03950 Fragaria vesca HOM05D001408 ORTHO05D001312 1.1e-15 86.3 164 32.9
FAN19G2584 Fragaria x ananassa HOM05D001408 ORTHO05D001312 1.1e-15 86.3 164 32.9
FAN23G2869 Fragaria x ananassa HOM05D001408 ORTHO05D001312 1.1e-15 86.3 164 32.9
Manes.06G050600 Manihot esculenta HOM05D001408 ORTHO05D001312 1.1e-15 86.3 164 33.5
Hma1.2p1_0018F.1_g012880 Hydrangea macrophylla HOM05D001408 ORTHO05D001312 1.5e-15 85.9 164 33.5
Manes.14G128500 Manihot esculenta HOM05D001408 ORTHO05D001312 1.5e-15 85.9 164 33.5
Thecc.09G119900 Theobroma cacao HOM05D001408 ORTHO05D001312 1.5e-15 85.9 164 33.5
COL.COLO4_15585 Corchorus olitorius HOM05D001408 ORTHO05D001312 1.9e-15 85.5 164 34.1
BcaC07g38634 Brassica carinata HOM05D001408 ORTHO05D001312 2.5e-15 85.1 164 33.5
A08p33700 Brassica napus HOM05D001408 ORTHO05D001312 2.5e-15 85.1 164 33.5
Hund26463 Selenicereus undatus HOM05D001408 ORTHO05D001312 2.5e-15 85.1 162 32.7
VMungo1215G1412 Vigna mungo HOM05D001408 ORTHO05D001312 2.5e-15 85.1 164 32.9
CANSAT56G1866 Cannabis sativa HOM05D001408 ORTHO05D001312 3.3e-15 84.7 164 33.5
Cc06_g09030 Coffea canephora HOM05D001408 ORTHO05D001312 3.3e-15 84.7 164 32.9
Lj4g0017489 Lotus japonicus HOM05D001408 ORTHO05D001312 3.3e-15 84.7 164 32.9
Aa31LG1G3880 Aethionema arabicum HOM05D001408 ORTHO05D001312 4.3e-15 84.3 164 32.9
Thhalv10008262m.g Eutrema salsugineum HOM05D001408 ORTHO05D001312 4.3e-15 84.3 164 32.9
Nn2g11918 Nelumbo nucifera HOM05D001408 ORTHO05D001312 4.3e-15 84.3 164 32.9
Actinidia26415 Actinidia chinensis HOM05D001408 ORTHO05D001312 5.7e-15 84.0 164 32.9
BraA09t41814Z Brassica rapa HOM05D001408 ORTHO05D001312 5.7e-15 84.0 164 32.9
CSS0030195 Camellia sinensis var. sinensis HOM05D001408 ORTHO05D001312 5.7e-15 84.0 164 32.3
TWI32G1093 Tripterygium wilfordii HOM05D001408 ORTHO05D001312 5.7e-15 84.0 164 32.9
FAN26G1158 Fragaria x ananassa HOM05D001408 ORTHO05D001312 7.4e-15 83.6 164 32.3
Sp1g09710 Schrenkiella parvula HOM05D001408 ORTHO05D001312 7.4e-15 83.6 164 32.9
Ca_21710_v3 Cicer arietinum L. HOM05D001408 ORTHO05D001312 9.7e-15 83.2 164 32.9
TAR625G0724 Trochodendron aralioides HOM05D001408 ORTHO05D001312 9.7e-15 83.2 164 32.3
Duzib187G1226 Durio zibethinus HOM05D001408 ORTHO05D001312 1.3e-14 82.8 164 32.9
Duzib187G1453 Durio zibethinus HOM05D001408 ORTHO05D001312 1.3e-14 82.8 164 32.9
Phvul.003G160700 Phaseolus vulgaris HOM05D001408 ORTHO05D001312 1.3e-14 82.8 164 31.7
TAR636G0529 Trochodendron aralioides HOM05D001408 ORTHO05D001312 1.3e-14 82.8 164 32.3
Ciclev10008976m.g Citrus clementina HOM05D001408 ORTHO05D001312 1.6e-14 82.4 164 32.9
Duzib150G0560 Durio zibethinus HOM05D001408 ORTHO05D001312 1.6e-14 82.4 164 32.9
A09p64810 Brassica napus HOM05D001408 ORTHO05D001312 2.2e-14 82.0 164 32.3
CARHR011220 Cardamine hirsuta HOM05D001408 ORTHO05D001312 2.2e-14 82.0 164 33.5
Gohir.A05G019300 Gossypium hirsutum HOM05D001408 ORTHO05D001312 2.2e-14 82.0 164 32.3
Gorai.009G020600 Gossypium raimondii HOM05D001408 ORTHO05D001312 2.2e-14 82.0 164 32.3
AT1G11020 Arabidopsis thaliana HOM05D001408 ORTHO05D001312 2.8e-14 81.6 164 32.9
C08p48380 Brassica napus HOM05D001408 ORTHO05D001312 2.8e-14 81.6 164 32.3
vmacro06185 Vaccinium macrocarpon HOM05D001408 ORTHO05D001823 2.8e-14 81.6 159 32.1
Glyma.17G118400 Glycine max HOM05D001408 ORTHO05D001312 3.7e-14 81.3 164 31.7
BraA08t35286Z Brassica rapa HOM05D001408 ORTHO05D001312 4.8e-14 80.9 177 31.1
Lj7C636T1 Lonicera japonica HOM05D001408 ORTHO05D001312 4.8e-14 80.9 174 31.0
Rhsim01G0087200 Rhododendron simsii HOM05D001408 ORTHO05D001312 4.8e-14 80.9 163 31.9
Rhsim01G0087500 Rhododendron simsii HOM05D001408 ORTHO05D001312 4.8e-14 80.9 163 31.9
TPR.G9085 Trifolium pratense HOM05D001408 ORTHO05D001312 4.8e-14 80.9 164 32.3
Eucgr.C04161 Eucalyptus grandis HOM05D001408 ORTHO05D001312 6.3e-14 80.5 164 31.7
Gohir.A13G198500 Gossypium hirsutum HOM05D001408 ORTHO05D001312 6.3e-14 80.5 164 32.3
Glyma.05G010700 Glycine max HOM05D001408 ORTHO05D001312 8.2e-14 80.1 164 31.1
Gohir.D13G203900 Gossypium hirsutum HOM05D001408 ORTHO05D001312 8.2e-14 80.1 164 32.3
Gorai.013G232700 Gossypium raimondii HOM05D001408 ORTHO05D001312 8.2e-14 80.1 164 32.3
Atru.chr7.1245 Acer truncatum HOM05D001408 ORTHO05D001312 1.1e-13 79.7 164 32.3
Carub.0001s1059 Capsella rubella HOM05D001408 ORTHO05D001312 1.1e-13 79.7 164 32.9
Zm00001eb055230 Zea mays HOM05D001408 ORTHO05D001312 1.4e-13 79.3 165 30.9
AL1G22000 Arabidopsis lyrata HOM05D001408 ORTHO05D001312 1.8e-13 79.0 164 32.9
arahy.Tifrunner.gnm1.ann1.LM66CL Arachis hypogaea HOM05D001408 ORTHO05D001312 1.8e-13 79.0 164 31.7
arahy.Tifrunner.gnm1.ann1.QNR6CS Arachis hypogaea HOM05D001408 ORTHO05D001312 1.8e-13 79.0 164 31.7
Lalb_Chr13g0302121 Lupinus albus HOM05D001408 ORTHO05D001312 1.8e-13 79.0 164 32.3
Os08g0384900 Oryza sativa ssp. japonica HOM05D001408 ORTHO05D001312 1.8e-13 79.0 165 30.3
Peaxi162Scf00361g00079 Petunia axillaris HOM05D001408 ORTHO05D001312 1.8e-13 79.0 161 32.3
DCAR_017846 Daucus carota HOM05D001408 ORTHO05D001312 2.4e-13 78.6 160 32.5
CDE06G2192 Ceratophyllum demersum HOM05D001408 ORTHO05D001312 4.1e-13 77.8 164 30.5
Nn8g39351 Nelumbo nucifera HOM05D001408 ORTHO05D001312 4.1e-13 77.8 164 29.9
Medtr4g113520 Medicago truncatula HOM05D001408 ORTHO05D001312 5.3e-13 77.4 164 31.1
HanXRQChr10g0316721 Helianthus annuus HOM05D001408 ORTHO05D001312 6.9e-13 77.0 163 30.1
Lsat_1_v5_gn_5_97600 Lactuca sativa HOM05D001408 ORTHO05D001312 9.1e-13 76.6 163 30.7
Oeu053756.2 Olea europaea HOM05D001408 ORTHO05D001312 9.1e-13 76.6 163 31.3
Zm00001eb161850 Zea mays HOM05D001408 ORTHO05D001312 1.2e-12 76.3 163 29.4
PSO170G5111 Papaver somniferum HOM05D001408 ORTHO05D001312 2.6e-12 75.1 164 30.5
PSO242G0003 Papaver somniferum HOM05D001408 ORTHO05D001312 2.6e-12 75.1 164 30.5
Ah.09g226490 Amaranthus hybridus HOM05D001408 ORTHO05D001312 5.9e-12 73.9 37 83.8
SEGI_31838 Sequoiadendron giganteum HOM05D001408 ORTHO05D001312 5.9e-12 73.9 164 31.7
DCAR_014856 Daucus carota HOM05D000070 ORTHO05D003491 7.7e-12 73.6 118 37.3
GSVIVG01015477001 Vitis vinifera HOM05D001408 ORTHO05D001312 7.7e-12 73.6 38 81.6
Aqoxy7G02017 Aquilegia oxysepala HOM05D001408 ORTHO05D001312 1.3e-11 72.8 162 29.0
ECA234G4639 Erigeron canadensis HOM05D001408 ORTHO05D001312 3.8e-11 71.2 163 29.4
FvH4_6g51470 Fragaria vesca HOM05D001408 ORTHO05D001312 3.8e-11 71.2 42 69.0
Os01g0610700 Oryza sativa ssp. japonica HOM05D001408 ORTHO05D001312 3.8e-11 71.2 163 28.8
Potri.006G154800 Populus trichocarpa HOM05D001408 ORTHO05D001312 3.8e-11 71.2 37 81.1
Potri.018G073400 Populus trichocarpa HOM05D001408 ORTHO05D001312 3.8e-11 71.2 37 81.1
Sabra18G0062200 Salix brachista HOM05D001408 ORTHO05D001312 3.8e-11 71.2 37 81.1
C08p14070 Brassica napus HOM05D001408 ORTHO05D001312 5.0e-11 70.9 171 30.4
BolC8t49045H Brassica oleracea HOM05D001408 ORTHO05D001312 5.0e-11 70.9 171 30.4
MELO3C026628.2 Cucumis melo HOM05D001408 ORTHO05D001312 8.5e-11 70.1 37 78.4
Psat0s3462g0120 Pisum sativum HOM05D001408 ORTHO05D001312 8.5e-11 70.1 39 74.4
Gohir.D05G020400 Gossypium hirsutum HOM05D001408 ORTHO05D001312 1.1e-10 69.7 37 78.4
Lsat_1_v5_gn_8_58101 Lactuca sativa HOM05D001408 ORTHO05D001312 2.5e-10 68.6 163 28.2
MBI04_g00946_MAGBIO Magnolia biondii HOM05D001408 ORTHO05D001312 2.5e-10 68.6 37 78.4
Actinidia40441 Actinidia chinensis HOM05D001408 ORTHO05D001312 3.2e-10 68.2 37 75.7
Sabra06G0122700 Salix brachista HOM05D001408 ORTHO05D001312 3.2e-10 68.2 37 78.4
BolC8t52377H Brassica oleracea HOM05D001408 ORTHO05D001312 5.5e-10 67.4 37 75.7
TAR626G1435 Trochodendron aralioides HOM05D001408 ORTHO05D001312 9.4e-10 66.6 37 75.7
HPP92_024083 Vanilla planifolia HOM05D001408 ORTHO05D001312 4.6e-09 64.3 163 27.0
ATR0716G078 Amborella trichopoda HOM05D001408 ORTHO05D001312 7.9e-09 63.5 36 75.0
Sc02g0006220 Simmondsia chinensis HOM05D001408 ORTHO05D001312 3.0e-08 61.6 33 78.8
Mapoly0061s0128 Marchantia polymorpha HOM05D001408 ORTHO05D001312 9.7e-07 56.6 37 64.9
Nitab4.5_0009562g0020 Nicotiana tabacum HOM05D001408 ORTHO05D001312 9.7e-07 56.6 32 81.2
HanXRQChr07g0197361 Helianthus annuus HOM05D001408 ORTHO05D001312 1.3e-06 56.2 37 59.5
Nitab4.5_0000010g0070 Nicotiana tabacum HOM05D001408 ORTHO05D001312 1.3e-06 56.2 31 80.6
SMO147G0383 Selaginella moellendorffii HOM05D001408 ORTHO05D001312 2.8e-06 55.1 40 55.0


User provided reference genes

Program Settings