Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 6.4e-138 494.2 269 100.0
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.3e-95 353.6 237 79.3
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 4.8e-93 345.1 269 73.6
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 2.4e-92 342.8 266 70.3
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 9.0e-92 340.9 261 70.9
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 9.9e-91 337.4 261 71.6
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 8.4e-90 334.3 263 68.1
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 4.2e-89 332.0 247 69.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 5.5e-89 331.6 261 70.9
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 5.5e-89 331.6 268 69.4
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 3.5e-88 328.9 261 66.7
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.0e-87 327.4 270 68.1
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 1.0e-87 327.4 242 70.2
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 8.7e-87 324.3 267 67.8
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 1.5e-86 323.6 237 70.0
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 1.5e-86 323.6 247 70.4
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.3e-86 322.4 258 69.4
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.6e-85 320.1 260 66.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 1.8e-84 316.6 247 68.0
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 1.8e-84 316.6 247 68.4
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 2.4e-84 316.2 235 74.0
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 3.1e-84 315.8 247 68.8
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 3.1e-84 315.8 265 67.5
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 1.5e-83 313.5 261 66.3
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 2.0e-83 313.2 247 69.6
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 3.4e-83 312.4 248 69.0
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 7.6e-83 311.2 263 67.7
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 7.6e-83 311.2 263 67.7
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 1.3e-82 310.5 261 63.6
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 1.7e-82 310.1 238 71.8
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 1.7e-82 310.1 235 68.5
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 1.7e-82 310.1 199 77.9
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 1.7e-82 310.1 244 67.6
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.9e-82 309.3 251 69.7
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.9e-82 309.3 235 68.5
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 6.5e-82 308.1 237 65.8
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 1.4e-81 307.0 259 61.8
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 1.4e-81 307.0 244 69.7
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 1.9e-81 306.6 233 70.4
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 3.2e-81 305.8 236 71.6
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 5.5e-81 305.1 235 69.4
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 1.2e-80 303.9 240 70.8
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 1.2e-80 303.9 266 66.5
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 2.7e-80 302.8 265 65.7
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 6.0e-80 301.6 235 69.4
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 6.0e-80 301.6 247 66.0
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 2.3e-79 299.7 253 66.0
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.0e-79 299.3 250 68.4
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 3.9e-79 298.9 265 61.1
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 5.1e-79 298.5 263 65.8
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.5e-78 296.2 241 63.5
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 4.3e-78 295.4 276 63.4
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 4.8e-77 292.0 238 69.3
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 1.1e-76 290.8 263 62.4
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 1.4e-76 290.4 234 66.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 3.1e-76 289.3 237 66.2
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 5.9e-75 285.0 234 62.8
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 1.0e-74 284.3 236 62.3
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 6.5e-74 281.6 256 64.1
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 2.5e-73 279.6 199 70.4
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 2.5e-73 279.6 238 67.2
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 3.2e-73 279.3 267 58.8
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 7.2e-73 278.1 247 62.8
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 3.6e-72 275.8 253 64.0
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 6.1e-72 275.0 265 61.1
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 1.0e-71 274.2 180 73.3
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 1.8e-71 273.5 237 62.9
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 3.0e-71 272.7 155 83.2
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 5.1e-71 271.9 272 61.8
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 3.3e-70 269.2 237 64.1
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 4.3e-70 268.9 269 55.4
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 4.3e-70 268.9 180 72.8
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 4.3e-70 268.9 180 72.8
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 7.4e-70 268.1 155 81.3
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 1.3e-69 267.3 247 62.8
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 1.6e-69 266.9 236 59.3
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.8e-69 266.2 238 63.9
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 4.8e-69 265.4 253 63.2
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 4.8e-69 265.4 313 52.1
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 1.1e-68 264.2 253 62.8
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.1e-68 264.2 253 62.8
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.8e-68 263.5 263 58.9
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 2.4e-68 263.1 253 62.5
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 5.3e-68 261.9 263 58.6
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 6.9e-68 261.5 253 60.1
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 6.9e-68 261.5 241 60.6
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 1.2e-67 260.8 199 65.8
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.5e-67 260.4 238 60.5
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 2.0e-67 260.0 253 62.1
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 5.9e-67 258.5 256 55.9
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 7.7e-67 258.1 253 61.3
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 7.7e-67 258.1 253 61.3
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 1.0e-66 257.7 259 58.7
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 6.5e-66 255.0 254 59.4
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 1.1e-65 254.2 261 59.0
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 4.2e-65 252.3 236 59.3
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 7.9e-64 248.1 252 59.9
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 3.0e-63 246.1 251 60.2
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 3.9e-63 245.7 249 59.0
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 5.1e-63 245.4 238 56.3
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 1.3e-61 240.7 267 54.7
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 2.8e-61 239.6 235 59.1
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 3.7e-61 239.2 235 61.3
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.7e-61 239.2 235 61.3
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.1e-60 235.7 235 60.4
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 5.3e-60 235.3 210 60.0
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 1.2e-59 234.2 253 57.7
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 5.9e-59 231.9 253 57.3
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 7.2e-57 224.9 253 55.7
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 4.7e-56 222.2 120 83.3
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 2.2e-53 213.4 295 49.2
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.2e-49 198.4 266 45.9
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 2.7e-48 196.4 236 49.6
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 5.7e-46 188.7 124 71.0
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 7.5e-46 188.3 269 42.0
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 4.8e-45 185.7 164 62.8
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 7.2e-41 171.8 236 40.7
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 1.6e-40 170.6 96 84.4
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 1.5e-38 164.1 236 47.0
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 1.7e-37 160.6 266 40.6
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 8.0e-32 141.7 80 86.2
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 1.2e-27 127.9 146 44.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 3.3e-25 119.8 273 34.4
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 4.7e-24 115.9 179 47.5
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 1.8e-23 114.0 179 44.1
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 1.3e-21 107.8 58 89.7
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 1.3e-21 107.8 60 86.7
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-19 101.3 168 33.3
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 4.7e-16 89.4 158 32.9
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 9.5e-09 65.1 132 29.5
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 2.1e-08 63.9 33 87.9
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 4.7e-08 62.8 176 27.3
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 4.4e-06 56.2 74 41.9


User provided reference genes

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