Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0002200 Simmondsia chinensis HOM05D003904 ORTHO05D004378 1.1e-90 336.7 178 100.0
Sc05g0002020 Simmondsia chinensis HOM05D003904 ORTHO05D004378 9.0e-56 220.7 186 68.3
Hund05569 Selenicereus undatus HOM05D003904 ORTHO05D004378 5.4e-53 211.5 176 66.5
AUR62001117 Chenopodium quinoa HOM05D003904 ORTHO05D004378 2.1e-52 209.5 176 67.6
GSVIVG01038356001 Vitis vinifera HOM05D003904 ORTHO05D004378 7.9e-52 207.6 187 66.8
Dinv19185 Davidia involucrata HOM05D003904 ORTHO05D004378 1.0e-51 207.2 186 65.1
EL10Ac7g17872 Beta vulgaris HOM05D003904 ORTHO05D004378 3.9e-51 205.3 172 68.6
AUR62016559 Chenopodium quinoa HOM05D003904 ORTHO05D004378 3.9e-51 205.3 171 68.4
Ah.08g214500 Amaranthus hybridus HOM05D003904 ORTHO05D004378 1.8e-48 196.4 183 64.5
Ciclev10022271m.g Citrus clementina HOM05D003904 ORTHO05D004378 5.3e-48 194.9 185 63.2
Dinv12666 Davidia involucrata HOM05D003904 ORTHO05D004378 2.6e-47 192.6 191 59.7
Nn3g20007 Nelumbo nucifera HOM05D003904 ORTHO05D004378 9.9e-47 190.7 187 62.0
Duzib211G0008 Durio zibethinus HOM05D003904 ORTHO05D004378 1.3e-46 190.3 185 61.6
Manes.13G047800 Manihot esculenta HOM05D003904 ORTHO05D004378 1.7e-46 189.9 185 61.6
Manes.12G046500 Manihot esculenta HOM05D003904 ORTHO05D004378 2.2e-46 189.5 186 59.7
Duzib138G1906 Durio zibethinus HOM05D003904 ORTHO05D004378 4.9e-46 188.3 185 61.1
Thecc.01G222100 Theobroma cacao HOM05D003904 ORTHO05D004378 4.9e-46 188.3 185 60.5
Duzib133G0063 Durio zibethinus HOM05D003904 ORTHO05D004378 1.9e-45 186.4 185 61.1
Nn1g07928 Nelumbo nucifera HOM05D003904 ORTHO05D004378 3.2e-45 185.7 187 61.5
TAR362G1128 Trochodendron aralioides HOM05D003904 ORTHO05D004378 4.2e-45 185.3 190 61.6
Cc01_g16830 Coffea canephora HOM05D003904 ORTHO05D004378 9.3e-45 184.1 184 58.2
Atru.chr6.1416 Acer truncatum HOM05D003904 ORTHO05D004378 1.2e-44 183.7 185 59.5
Gohir.A07G200400 Gossypium hirsutum HOM05D003904 ORTHO05D004378 1.2e-44 183.7 185 60.0
Lj2C1127G11 Lonicera japonica HOM05D003904 ORTHO05D004378 2.7e-44 182.6 183 60.7
Gorai.001G233000 Gossypium raimondii HOM05D003904 ORTHO05D004378 3.5e-44 182.2 185 60.0
CSS0000113 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 7.9e-44 181.0 187 61.0
Potri.002G244700 Populus trichocarpa HOM05D003904 ORTHO05D004378 7.9e-44 181.0 181 59.7
Gohir.D07G206700 Gossypium hirsutum HOM05D003904 ORTHO05D004378 1.3e-43 180.3 185 59.5
MELO3C021054.2 Cucumis melo HOM05D003904 ORTHO05D004378 8.7e-43 177.6 183 60.7
CsaV3_7G026020 Cucumis sativus L. HOM05D003904 ORTHO05D004378 2.5e-42 176.0 183 60.1
Prupe.8G200300 Prunus persica HOM05D003904 ORTHO05D004378 5.6e-42 174.9 185 59.5
Cfa002841 Carpinus fangiana HOM05D003904 ORTHO05D004378 9.6e-42 174.1 183 60.7
MD05G1172900 Malus domestica HOM05D003904 ORTHO05D004378 1.6e-41 173.3 181 57.5
TAR636G3655 Trochodendron aralioides HOM05D003904 ORTHO05D004378 2.1e-41 172.9 188 61.2
CANSAT01G1788 Cannabis sativa HOM05D003904 ORTHO05D004378 4.8e-41 171.8 181 60.2
HanXRQChr01g0015241 Helianthus annuus HOM05D003904 ORTHO05D004378 8.2e-41 171.0 179 59.8
Sopen09g022790 Solanum pennellii HOM05D003904 ORTHO05D004378 1.1e-40 170.6 188 58.0
THA.LOC104818966 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 1.1e-40 170.6 182 58.2
CANSAT01G1918 Cannabis sativa HOM05D003904 ORTHO05D004378 1.8e-40 169.9 181 59.7
Gorai.001G232800 Gossypium raimondii HOM05D003904 ORTHO05D004378 2.4e-40 169.5 190 57.4
THA.LOC104802662 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 2.4e-40 169.5 185 57.8
Solyc09g059620.4 Solanum lycopersicum HOM05D003904 ORTHO05D004378 3.1e-40 169.1 188 57.4
Gohir.D07G206500 Gossypium hirsutum HOM05D003904 ORTHO05D004378 5.3e-40 168.3 190 56.8
arahy.Tifrunner.gnm1.ann1.P0KJIP Arachis hypogaea HOM05D003904 ORTHO05D004378 6.9e-40 167.9 185 59.5
CiPaw.04G104300 Carya illinoinensis HOM05D003904 ORTHO05D004378 6.9e-40 167.9 183 59.6
Potri.014G190800 Populus trichocarpa HOM05D003904 ORTHO05D004378 9.0e-40 167.5 180 57.2
Actinidia09474 Actinidia chinensis HOM05D003904 ORTHO05D004378 1.2e-39 167.2 185 58.4
PGR044G0663 Punica granatum HOM05D003904 ORTHO05D004378 1.5e-39 166.8 182 56.0
TWI18G1339 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 1.5e-39 166.8 184 56.0
THA.LOC104822497 Tarenaya hassleriana HOM05D003904 ORTHO05D004378 2.0e-39 166.4 187 55.6
MSTRG.20964 Avicennia marina HOM05D003904 ORTHO05D004378 2.6e-39 166.0 188 54.3
Oeu037383.1 Olea europaea HOM05D003904 ORTHO05D004378 2.6e-39 166.0 187 54.0
QL09p052136 Quercus lobata HOM05D003904 ORTHO05D004378 2.6e-39 166.0 181 60.8
Thhalv10021536m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 1.0e-38 164.1 182 56.6
QL09p053006 Quercus lobata HOM05D003904 ORTHO05D004378 1.0e-38 164.1 181 60.2
ClCG09G008850 Citrullus lanatus HOM05D003904 ORTHO05D004378 1.3e-38 163.7 186 60.2
Actinidia23715 Actinidia chinensis HOM05D003904 ORTHO05D004378 2.2e-38 162.9 187 59.4
CiPaw.03G146900 Carya illinoinensis HOM05D003904 ORTHO05D004378 2.2e-38 162.9 184 56.5
Eucgr.K02144 Eucalyptus grandis HOM05D003904 ORTHO05D004378 2.2e-38 162.9 183 57.9
CSS0026054 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 2.9e-38 162.5 214 50.0
RcHm_v2.0_Chr6g0284331 Rosa chinensis HOM05D003904 ORTHO05D004378 2.9e-38 162.5 183 57.9
Sabra14G0142300 Salix brachista HOM05D003904 ORTHO05D004378 2.9e-38 162.5 178 56.7
Sed0012318 Sechium edule HOM05D003904 ORTHO05D004378 4.9e-38 161.8 183 57.9
TWI36G1515 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 8.4e-38 161.0 179 55.9
TAR369G0358 Trochodendron aralioides HOM05D003904 ORTHO05D004378 8.4e-38 161.0 179 60.9
FvH4_2g18710 Fragaria vesca HOM05D003904 ORTHO05D004378 2.5e-37 159.5 183 58.5
TWI75G0190 Tripterygium wilfordii HOM05D003904 ORTHO05D004378 2.5e-37 159.5 176 56.8
MSTRG.18841 Avicennia marina HOM05D003904 ORTHO05D004378 3.2e-37 159.1 188 53.2
Phvul.008G130000 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 7.1e-37 157.9 185 54.6
Phvul.010G020800 Phaseolus vulgaris HOM05D003904 ORTHO05D004378 9.3e-37 157.5 184 52.2
Lalb_Chr12g0209941 Lupinus albus HOM05D003904 ORTHO05D004378 1.2e-36 157.1 183 54.6
MD10G1161300 Malus domestica HOM05D003904 ORTHO05D004378 1.6e-36 156.8 181 53.6
Sp3g06110 Schrenkiella parvula HOM05D003904 ORTHO05D004378 2.7e-36 156.0 182 54.9
AT3G07170 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 6.0e-36 154.8 182 53.8
Peaxi162Scf00238g00213 Petunia axillaris HOM05D003904 ORTHO05D004378 7.9e-36 154.5 190 52.6
Psat4g200440 Pisum sativum HOM05D003904 ORTHO05D004378 1.0e-35 154.1 188 51.1
Carub.0003s0669 Capsella rubella HOM05D003904 ORTHO05D004378 1.3e-35 153.7 182 54.9
Lsat_1_v5_gn_5_180640 Lactuca sativa HOM05D003904 ORTHO05D004378 1.3e-35 153.7 187 54.5
AL3G18420 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 1.8e-35 153.3 182 54.4
Nitab4.5_0000045g0390 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.8e-35 153.3 186 52.7
TPR.G17124 Trifolium pratense HOM05D003904 ORTHO05D004378 1.8e-35 153.3 184 52.2
Glyma.08G349900 Glycine max HOM05D003904 ORTHO05D004378 2.3e-35 152.9 183 54.6
Ca_23234_v3 Cicer arietinum L. HOM05D003904 ORTHO05D004378 3.0e-35 152.5 184 53.8
Glyma.03G064800 Glycine max HOM05D003904 ORTHO05D004378 3.9e-35 152.1 185 53.0
ECA248G3101 Erigeron canadensis HOM05D003904 ORTHO05D004378 5.1e-35 151.8 179 53.6
PSO357G0115 Papaver somniferum HOM05D003904 ORTHO05D004378 8.7e-35 151.0 188 53.2
Nitab4.5_0000345g0040 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.5e-34 150.2 229 45.9
PSO170G6902 Papaver somniferum HOM05D003904 ORTHO05D004378 1.9e-34 149.8 188 52.7
COL.COLO4_15645 Corchorus olitorius HOM05D003904 ORTHO05D004378 5.7e-34 148.3 152 61.8
FAN15G2255 Fragaria x ananassa HOM05D003904 ORTHO05D004378 5.7e-34 148.3 181 56.9
Lj3g0009581 Lotus japonicus HOM05D003904 ORTHO05D004378 5.7e-34 148.3 186 53.8
FAN27G1941 Fragaria x ananassa HOM05D003904 ORTHO05D004378 1.6e-33 146.7 181 56.4
C05p60200 Brassica napus HOM05D003904 ORTHO05D004378 2.8e-33 146.0 182 51.6
Hund18422 Selenicereus undatus HOM05D003904 ORTHO05D004378 2.8e-33 146.0 171 55.6
BolC5t34670H Brassica oleracea HOM05D003904 ORTHO05D004378 3.7e-33 145.6 186 50.0
Medtr8g012995 Medicago truncatula HOM05D003904 ORTHO05D004378 3.7e-33 145.6 187 49.7
Migut.N00625 Erythranthe guttata HOM05D003904 ORTHO05D004378 4.8e-33 145.2 188 51.6
Nitab4.5_0002641g0160 Nicotiana tabacum HOM05D003904 ORTHO05D004378 1.4e-32 143.7 188 49.5
BcaC05g29749 Brassica carinata HOM05D003904 ORTHO05D004378 2.4e-32 142.9 181 50.3
FAN24G3335 Fragaria x ananassa HOM05D003904 ORTHO05D004378 2.4e-32 142.9 181 55.8
PGSC0003DMG400017482 Solanum tuberosum HOM05D003904 ORTHO05D004378 2.4e-32 142.9 156 57.1
CARHR081810 Cardamine hirsuta HOM05D003904 ORTHO05D004378 3.1e-32 142.5 182 53.3
Gohir.A07G200150 Gossypium hirsutum HOM05D003904 ORTHO05D004378 3.1e-32 142.5 150 57.3
Lalb_Chr07g0194271 Lupinus albus HOM05D003904 ORTHO05D004378 3.1e-32 142.5 183 52.5
Sabra02G0186200 Salix brachista HOM05D003904 ORTHO05D004378 4.1e-32 142.1 147 58.5
BraA05t22830Z Brassica rapa HOM05D003904 ORTHO05D004378 5.3e-32 141.7 183 51.4
Glyma.16G100600 Glycine max HOM05D003904 ORTHO05D004378 5.3e-32 141.7 185 50.8
CSS0042014 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 1.5e-31 140.2 153 56.2
Aqoxy5G00012 Aquilegia oxysepala HOM05D003904 ORTHO05D004378 3.4e-31 139.0 206 48.5
SGA_v2.0_scaffold3G01636 Striga asiatica HOM05D003904 ORTHO05D004378 5.9e-31 138.3 190 47.4
Actinidia31468 Actinidia chinensis HOM05D003904 ORTHO05D004378 1.0e-30 137.5 164 53.7
BcaC05g29846 Brassica carinata HOM05D003904 ORTHO05D004378 1.0e-30 137.5 183 48.1
Nitab4.5_0002616g0050 Nicotiana tabacum HOM05D003904 ORTHO05D004378 2.2e-30 136.3 188 48.4
SGA_v2.0_scaffold18G08327 Striga asiatica HOM05D003904 ORTHO05D004378 2.9e-30 136.0 191 47.1
SalBow6G0123 Salvia bowleyana HOM05D003904 ORTHO05D004378 3.8e-30 135.6 152 53.3
CDE05G3121 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 8.5e-30 134.4 194 47.9
SGA_v2.0_scaffold6G03227 Striga asiatica HOM05D003904 ORTHO05D004378 8.5e-30 134.4 187 47.6
C03p42720 Brassica napus HOM05D003904 ORTHO05D004378 1.1e-29 134.0 183 47.0
HPP92_021424 Vanilla planifolia HOM05D003904 ORTHO05D004378 1.1e-29 134.0 187 49.2
BolC3t16542H Brassica oleracea HOM05D003904 ORTHO05D004378 1.9e-29 133.3 183 47.0
ATR0609G102 Amborella trichopoda HOM05D003904 ORTHO05D004378 2.5e-29 132.9 188 48.4
A03p35130 Brassica napus HOM05D003904 ORTHO05D004378 3.2e-29 132.5 194 44.8
Os04g0378200 Oryza sativa ssp. japonica HOM05D003904 ORTHO05D004378 3.2e-29 132.5 188 48.4
Rhsim13G0046900 Rhododendron simsii HOM05D003904 ORTHO05D004378 5.5e-29 131.7 250 41.2
DCAR_004727 Daucus carota HOM05D003904 ORTHO05D004378 9.3e-29 131.0 187 45.5
AUR62035029 Chenopodium quinoa HOM05D003904 ORTHO05D004378 1.2e-28 130.6 116 63.8
Rhsim01G0254500 Rhododendron simsii HOM05D003904 ORTHO05D004378 1.2e-28 130.6 167 50.3
CDE05G2788 Ceratophyllum demersum HOM05D003904 ORTHO05D004378 2.7e-28 129.4 194 47.4
unitig_736.g22341 Utricularia gibba HOM05D003904 ORTHO05D004378 4.6e-28 128.6 187 45.5
unitig_899.g15018 Utricularia gibba HOM05D003904 ORTHO05D004378 6.1e-28 128.3 184 46.2
BcaC06g30768 Brassica carinata HOM05D003904 ORTHO05D004378 1.3e-27 127.1 182 47.8
Sp2g19090 Schrenkiella parvula HOM05D003904 ORTHO05D004378 3.9e-27 125.6 182 45.6
C07p39350 Brassica napus HOM05D003904 ORTHO05D004378 5.1e-27 125.2 184 46.2
VMungo0331G0837 Vigna mungo HOM05D003904 ORTHO05D004378 5.1e-27 125.2 142 52.1
BraA06t26812Z Brassica rapa HOM05D003904 ORTHO05D004378 3.3e-26 122.5 201 44.8
Zm00001eb085860 Zea mays HOM05D003904 ORTHO05D004378 1.3e-25 120.6 186 44.1
Aa31LG5G17730 Aethionema arabicum HOM05D003904 ORTHO05D004378 2.2e-25 119.8 153 52.3
Zm00001eb420700 Zea mays HOM05D003904 ORTHO05D004378 4.8e-25 118.6 185 44.9
Haze_24836 Corylus avellana HOM05D003904 ORTHO05D004378 6.3e-25 118.2 146 54.1
A06p38980 Brassica napus HOM05D003904 ORTHO05D004378 1.8e-24 116.7 184 45.7
Haze_24839 Corylus avellana HOM05D003904 ORTHO05D004378 1.8e-24 116.7 146 53.4
Oeu031826.2 Olea europaea HOM05D003904 ORTHO05D004378 2.4e-24 116.3 185 44.3
BraA03t12693Z Brassica rapa HOM05D003904 ORTHO05D004378 9.1e-24 114.4 145 47.6
arahy.Tifrunner.gnm1.ann1.YG552F Arachis hypogaea HOM05D003904 ORTHO05D004378 2.0e-23 113.2 235 41.3
BolC7t44455H Brassica oleracea HOM05D003904 ORTHO05D004378 3.4e-23 112.5 189 45.0
vmacro14743 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 3.4e-23 112.5 223 39.9
Thhalv10004989m.g Eutrema salsugineum HOM05D003904 ORTHO05D004378 5.9e-23 111.7 157 45.9
Cpa.g.sc8.132 Carica papaya HOM05D003904 ORTHO05D004378 1.0e-22 110.9 115 62.6
AL8G21740 Arabidopsis lyrata HOM05D003904 ORTHO05D004378 8.5e-22 107.8 188 43.1
AT5G48680 Arabidopsis thaliana HOM05D003904 ORTHO05D004378 1.9e-21 106.7 186 43.0
Carub.0008s0842 Capsella rubella HOM05D003904 ORTHO05D004378 2.7e-20 102.8 187 41.2
CSS0009711 Camellia sinensis var. sinensis HOM05D003904 ORTHO05D004378 7.9e-20 101.3 162 46.3
BcaC06g30767 Brassica carinata HOM05D002747 ORTHO05D003069 4.4e-18 95.5 107 56.1
Sed0014618 Sechium edule HOM05D003904 ORTHO05D004378 5.7e-18 95.1 125 56.0
CARHR183220 Cardamine hirsuta HOM05D003904 ORTHO05D004378 1.7e-17 93.6 181 42.0
SMO147G0262 Selaginella moellendorffii HOM05D003904 ORTHO05D004378 9.1e-16 87.8 189 38.6
vmacro02774 Vaccinium macrocarpon HOM05D003904 ORTHO05D004378 1.2e-15 87.4 257 33.1
Mapoly0007s0146 Marchantia polymorpha HOM05D003904 ORTHO05D004378 1.7e-14 83.6 204 35.8
Migut.D02496 Erythranthe guttata HOM05D003904 ORTHO05D004378 4.2e-13 79.0 122 45.1
Pp3c16_11410 Physcomitrium patens HOM05D003904 ORTHO05D004378 5.5e-13 78.6 190 37.9
Aa31sc370G10 Aethionema arabicum HOM05D003904 ORTHO05D004378 1.6e-12 77.0 142 38.7
AagrBONN_evm.TU.Sc2ySwM_344.3201 Anthoceros agrestis HOM05D003904 ORTHO05D004378 3.9e-11 72.4 198 33.8
AagrBONN_evm.TU.Sc2ySwM_340.277 Anthoceros agrestis HOM05D003904 ORTHO05D004378 5.2e-11 72.0 193 35.2
Oeu037381.1 Olea europaea HOM05D003904 ORTHO05D004378 5.2e-11 72.0 59 64.4
Zm00001eb036250 Zea mays HOM05D003904 ORTHO05D004378 1.1e-08 64.3 186 35.5
Pp3c25_7670 Physcomitrium patens HOM05D003535 ORTHO05D004378 4.1e-08 62.4 191 33.0
Glyma.18G166400 Glycine max HOM05D003904 ORTHO05D004378 2.0e-07 60.1 77 53.2
Zm00001eb128390 Zea mays HOM05D003904 ORTHO05D004378 3.5e-07 59.3 153 34.0
Zm00001eb424450 Zea mays HOM05D003535 ORTHO05D003986 5.9e-07 58.5 187 33.2
Os08g0526500 Oryza sativa ssp. japonica HOM05D003904 ORTHO05D004378 8.5e-06 54.7 208 32.7


User provided reference genes

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