Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0001570 Simmondsia chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1841.6 944 100.0
Hund02809 Selenicereus undatus HOM05D004953 ORTHO05D006193 0.0e+00 1213.7 943 66.8
AUR62028642 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1193.7 952 64.3
EL10Ac5g10584 Beta vulgaris HOM05D004953 ORTHO05D006193 0.0e+00 1190.6 953 64.2
Rhsim13G0055000 Rhododendron simsii HOM05D004953 ORTHO05D006193 0.0e+00 1159.8 940 63.5
AUR62008065 Chenopodium quinoa HOM05D004953 ORTHO05D006193 0.0e+00 1154.8 954 63.4
Lj2C1111T4 Lonicera japonica HOM05D004953 ORTHO05D006193 0.0e+00 1151.0 945 63.3
Dinv28790 Davidia involucrata HOM05D004953 ORTHO05D006193 0.0e+00 1147.1 940 63.3
CSS0012001 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1144.0 946 63.7
CSS0005222 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 0.0e+00 1142.5 946 63.6
RcHm_v2.0_Chr6g0282191 Rosa chinensis HOM05D004953 ORTHO05D006193 0.0e+00 1131.3 947 61.7
vmacro02841 Vaccinium macrocarpon HOM05D004953 ORTHO05D006193 0.0e+00 1118.6 963 61.3
MD05G1153500 Malus domestica HOM05D004953 ORTHO05D006193 0.0e+00 1117.1 948 61.6
Duzib133G0915 Durio zibethinus HOM05D004953 ORTHO05D006193 0.0e+00 1109.0 952 60.5
FAN27G2958 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1107.0 956 60.5
FAN24G2388 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1104.7 945 61.0
FvH4_2g17460 Fragaria vesca HOM05D004953 ORTHO05D006193 0.0e+00 1104.4 945 61.0
Ciclev10018269m.g Citrus clementina HOM05D004953 ORTHO05D006193 0.0e+00 1103.2 930 61.3
Nn1g09452 Nelumbo nucifera HOM05D004953 ORTHO05D006193 0.0e+00 1100.9 944 60.5
Oeu013420.1 Olea europaea HOM05D004953 ORTHO05D006193 0.0e+00 1096.3 946 59.8
Cc01_g15850 Coffea canephora HOM05D004953 ORTHO05D006193 0.0e+00 1094.3 948 60.2
Thecc.01G207300 Theobroma cacao HOM05D004953 ORTHO05D006193 0.0e+00 1089.7 950 59.3
Ca_08034_v3 Cicer arietinum L. HOM05D004953 ORTHO05D006193 0.0e+00 1089.3 945 59.6
Medtr7g080880 Medicago truncatula HOM05D004953 ORTHO05D006193 0.0e+00 1088.6 941 60.0
FAN15G1962 Fragaria x ananassa HOM05D004953 ORTHO05D006193 0.0e+00 1088.2 961 59.5
Potri.014G175350 Populus trichocarpa HOM05D004953 ORTHO05D006193 0.0e+00 1087.4 957 59.5
COL.COLO4_34276 Corchorus olitorius HOM05D004953 ORTHO05D006193 0.0e+00 1085.9 955 59.6
Cfa010574 Carpinus fangiana HOM05D004953 ORTHO05D006193 0.0e+00 1085.5 950 59.7
Gorai.007G161300 Gossypium raimondii HOM05D004953 ORTHO05D006193 0.0e+00 1084.3 951 59.2
Prupe.8G186900 Prunus persica HOM05D004953 ORTHO05D006193 0.0e+00 1083.2 959 59.6
Manes.13G056300 Manihot esculenta HOM05D004953 ORTHO05D006193 0.0e+00 1082.8 946 60.0
Lj1g0025378 Lotus japonicus HOM05D004953 ORTHO05D006193 0.0e+00 1081.6 944 60.0
TWI36G1252 Tripterygium wilfordii HOM05D004953 ORTHO05D006193 0.0e+00 1081.2 951 59.3
Cpa.g.sc8.38 Carica papaya HOM05D004953 ORTHO05D006193 0.0e+00 1078.9 952 58.8
Atru.BG.40.p Acer truncatum HOM05D004953 ORTHO05D006193 0.0e+00 1075.8 922 61.6
Sabra14G0134100 Salix brachista HOM05D004953 ORTHO05D006193 0.0e+00 1075.5 955 59.2
Haze_03508 Corylus avellana HOM05D004953 ORTHO05D006193 6.5e-312 1074.7 950 58.8
Migut.D00772 Erythranthe guttata HOM05D004953 ORTHO05D006193 6.5e-312 1074.3 950 59.5
CiPaw.13G055800 Carya illinoinensis HOM05D004953 ORTHO05D006193 6.5e-312 1073.9 932 60.3
THA.LOC104819011 Tarenaya hassleriana HOM05D004953 ORTHO05D006193 8.3e-310 1067.0 949 57.3
PGSC0003DMG400021911 Solanum tuberosum HOM05D004953 ORTHO05D006193 1.1e-309 1066.6 947 59.0
HanXRQChr12g0363951 Helianthus annuus HOM05D004953 ORTHO05D006193 2.4e-309 1065.4 956 58.4
VMungo1383G3652 Vigna mungo HOM05D004953 ORTHO05D006193 7.1e-309 1063.9 940 58.7
Nitab4.5_0008926g0010 Nicotiana tabacum HOM05D004953 ORTHO05D006193 1.2e-308 1063.1 941 59.0
CAN.G1468.3 Capsicum annuum HOM05D004953 ORTHO05D006193 7.3e-306 1053.9 941 58.7
Nitab4.5_0000038g0380 Nicotiana tabacum HOM05D004953 ORTHO05D006193 2.8e-305 1052.0 940 58.7
CANSAT01G2219 Cannabis sativa HOM05D004953 ORTHO05D006193 4.7e-305 1051.2 952 57.7
Peaxi162Scf02239g00020 Petunia axillaris HOM05D004953 ORTHO05D006193 6.2e-305 1050.8 941 56.9
SalBow3G1227 Salvia bowleyana HOM05D004953 ORTHO05D006193 6.2e-305 1050.8 955 58.3
Lsat_1_v5_gn_8_98501 Lactuca sativa HOM05D004953 ORTHO05D006193 1.1e-304 1050.0 956 58.4
Solyc09g042760.2 Solanum lycopersicum HOM05D004953 ORTHO05D006193 1.5e-303 1046.2 938 58.1
AL8G21200 Arabidopsis lyrata HOM05D004953 ORTHO05D006193 2.9e-302 1042.0 948 57.0
Eucgr.K00106 Eucalyptus grandis HOM05D004953 ORTHO05D006193 3.2e-301 1038.5 948 56.0
TPR.G35843 Trifolium pratense HOM05D004953 ORTHO05D006193 2.1e-300 1035.8 951 57.7
AT5G48390 Arabidopsis thaliana HOM05D004953 ORTHO05D006193 1.0e-299 1033.5 948 56.6
Thhalv10005371m.g Eutrema salsugineum HOM05D004953 ORTHO05D006193 1.5e-298 1029.6 951 56.2
CARHR183800 Cardamine hirsuta HOM05D004953 ORTHO05D006193 1.6e-297 1026.2 947 56.3
Sopen09g015810 Solanum pennellii HOM05D004953 ORTHO05D006193 2.1e-297 1025.8 938 57.4
Glyma.18G246600 Glycine max HOM05D004953 ORTHO05D006193 6.8e-296 1020.8 941 57.0
QL09p045412 Quercus lobata HOM05D004953 ORTHO05D006193 6.8e-296 1020.8 993 55.9
A06p39200 Brassica napus HOM05D004953 ORTHO05D006193 1.3e-294 1016.5 948 55.2
SHI10219 Sapria himalayana HOM05D004953 ORTHO05D006193 2.9e-294 1015.4 963 55.0
C07p39140 Brassica napus HOM05D004953 ORTHO05D006193 8.4e-294 1013.8 948 55.2
BolC7t44434H Brassica oleracea HOM05D004953 ORTHO05D006193 8.4e-294 1013.8 948 55.2
Aa31LG11G3580 Aethionema arabicum HOM05D004953 ORTHO05D006193 9.3e-293 1010.4 960 54.0
arahy.Tifrunner.gnm1.ann1.57Z9Z9 Arachis hypogaea HOM05D004953 ORTHO05D006193 2.7e-292 1008.8 996 54.7
Carub.0008s0798 Capsella rubella HOM05D004953 ORTHO05D006193 6.0e-292 1007.7 929 56.7
Sp2g18750 Schrenkiella parvula HOM05D004953 ORTHO05D006193 2.8e-289 998.8 951 54.5
ECA236G0268 Erigeron canadensis HOM05D004953 ORTHO05D006193 6.2e-289 997.7 946 55.7
Psat3g100880 Pisum sativum HOM05D004953 ORTHO05D006193 1.2e-287 993.4 943 55.7
MBI10_g23576_MAGBIO Magnolia biondii HOM05D004953 ORTHO05D006193 3.4e-287 991.9 948 56.0
GSVIVG01001528001 Vitis vinifera HOM05D004953 ORTHO05D006193 4.4e-287 991.5 859 61.6
Gohir.A11G144000 Gossypium hirsutum HOM05D004953 ORTHO05D006193 4.9e-286 988.0 826 60.7
SGA_v2.0_scaffold8G04488 Striga asiatica HOM05D004953 ORTHO05D006193 2.4e-285 985.7 947 54.9
Sed0024263 Sechium edule HOM05D004953 ORTHO05D006193 1.9e-282 976.1 947 53.9
MELO3C008751.2 Cucumis melo HOM05D004953 ORTHO05D006193 7.3e-282 974.2 932 54.2
Aqoxy2G04177 Aquilegia oxysepala HOM05D004953 ORTHO05D006193 9.6e-282 973.8 921 54.8
CsaV3_2G009520 Cucumis sativus L. HOM05D004953 ORTHO05D006193 2.1e-281 972.6 923 54.3
PSO478G1281 Papaver somniferum HOM05D004953 ORTHO05D006193 5.1e-275 951.4 952 55.1
PSO017G6601 Papaver somniferum HOM05D004953 ORTHO05D006193 2.0e-271 939.5 951 54.7
ClCG11G010960 Citrullus lanatus HOM05D004953 ORTHO05D006193 1.6e-268 929.9 953 52.5
TAR365G0304 Trochodendron aralioides HOM05D004953 ORTHO05D006193 2.7e-268 929.1 771 61.1
Aa31LG11G8930 Aethionema arabicum HOM05D004953 ORTHO05D006193 1.9e-266 922.9 947 51.2
Phvul.008G050500 Phaseolus vulgaris HOM05D004953 ORTHO05D006193 3.5e-260 902.1 814 58.2
unitig_52.g16794 Utricularia gibba HOM05D004953 ORTHO05D006193 4.6e-252 875.2 953 49.6
Gohir.D11G150400 Gossypium hirsutum HOM05D004953 ORTHO05D006193 7.7e-239 831.2 745 58.9
BcaC06g30800 Brassica carinata HOM05D004953 ORTHO05D006193 1.3e-238 830.5 840 52.1
Sed0015090 Sechium edule HOM05D004953 ORTHO05D006193 4.0e-235 818.9 941 47.9
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 5.2e-235 818.5 828 55.0
DCAR_004775 Daucus carota HOM05D004953 ORTHO05D006193 3.3e-234 815.8 692 60.8
HPP92_001916 Vanilla planifolia HOM05D004953 ORTHO05D006193 2.4e-232 809.7 948 47.3
Ah.11g050790 Amaranthus hybridus HOM05D004953 ORTHO05D006193 1.4e-224 783.9 664 62.3
CDE07G1537 Ceratophyllum demersum HOM05D004953 ORTHO05D006193 1.7e-206 723.8 947 44.5
ATR0743G003 Amborella trichopoda HOM05D004953 ORTHO05D006193 3.0e-182 643.3 992 39.4
Os01g0890900 Oryza sativa ssp. japonica HOM05D004953 ORTHO05D006193 4.9e-177 625.9 881 41.2
SEGI_29467 Sequoiadendron giganteum HOM05D004953 ORTHO05D006193 5.8e-170 602.4 945 38.3
Lalb_Chr03g0040541 Lupinus albus HOM05D004953 ORTHO05D006193 1.4e-160 571.2 488 59.4
Lalb_Chr03g0040531 Lupinus albus HOM05D004953 ORTHO05D006193 1.5e-133 481.5 472 58.5
Zm00001eb145140 Zea mays HOM05D004953 ORTHO05D006193 3.7e-132 476.9 748 39.0
Glyma.09G246350 Glycine max HOM05D004953 ORTHO05D006193 1.1e-128 465.3 416 55.8
Actinidia33396 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.4e-126 458.4 429 59.0
Actinidia33395 Actinidia chinensis HOM05D004953 ORTHO05D006193 9.7e-125 452.2 396 58.3
SMO201G0221 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 9.7e-125 452.2 877 32.7
Mapoly0032s0035 Marchantia polymorpha HOM05D004953 ORTHO05D006193 1.1e-123 448.7 886 32.2
CANSAT01G2868 Cannabis sativa HOM05D004953 ORTHO05D006193 1.1e-115 422.2 460 52.2
Pp3c2_410 Physcomitrium patens HOM05D004953 ORTHO05D006193 7.0e-115 419.5 926 30.9
Actinidia23342 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.9e-96 358.2 438 50.2
Actinidia12854 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.1e-71 275.0 248 56.5
FAN15G1853 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.6e-69 266.5 188 66.0
TPR.G1778 Trifolium pratense HOM05D004953 ORTHO05D019267 2.4e-38 165.2 454 31.7
FvH4_2g09600 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-35 156.0 337 34.1
FAN24G3373 Fragaria x ananassa HOM05D004953 ORTHO05D006193 4.6e-34 151.0 343 33.5
Actinidia23343 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.8e-33 149.1 149 53.7
FvH4_4g15200 Fragaria vesca HOM05D004953 ORTHO05D006193 3.1e-30 138.3 131 57.3
FAN11G3683 Fragaria x ananassa HOM05D004953 ORTHO05D006193 3.1e-30 138.3 352 31.0
TAR365G0721 Trochodendron aralioides HOM05D004953 ORTHO05D006193 1.9e-24 119.0 142 49.3
FvH4_3g38850 Fragaria vesca HOM05D004953 ORTHO05D006193 3.7e-23 114.8 125 52.0
FAN14G2335 Fragaria x ananassa HOM05D004953 ORTHO05D006193 8.2e-23 113.6 132 51.5
FAN14G2572 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.2e-20 105.5 72 68.1
FvH4_6g27414 Fragaria vesca HOM05D004953 ORTHO05D006193 2.9e-20 105.1 72 68.1
Actinidia29995 Actinidia chinensis HOM05D004953 ORTHO05D006193 8.5e-20 103.6 242 34.7
FvH4_4g10312 Fragaria vesca HOM05D004953 ORTHO05D006193 1.4e-19 102.8 72 68.1
FvH4_6g36680 Fragaria vesca HOM05D004953 ORTHO05D006193 2.5e-19 102.1 100 51.0
FvH4_6g36881 Fragaria vesca HOM05D004953 ORTHO05D006193 5.5e-19 100.9 72 65.3
FvH4_2g12761 Fragaria vesca HOM05D004953 ORTHO05D006193 7.2e-19 100.5 72 65.3
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 1.8e-17 95.9 124 46.0
FvH4_7g13151 Fragaria vesca HOM05D004953 ORTHO05D006193 3.0e-17 95.1 68 70.6
CSS0036997 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.2e-13 83.2 62 67.7
CSS0012475 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.5e-13 82.8 61 62.3
CSS0040358 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 2.0e-13 82.4 62 69.4
CSS0023073 Camellia sinensis var. sinensis HOM05D004953 ORTHO05D006193 1.0e-12 80.1 61 62.3
FvH4_4g15182 Fragaria vesca HOM05D004953 ORTHO05D006193 3.8e-12 78.2 48 77.1
FvH4_7g08382 Fragaria vesca HOM05D004953 ORTHO05D006193 6.5e-12 77.4 55 65.5
FAN14G1126 Fragaria x ananassa HOM05D004953 ORTHO05D006193 7.2e-11 73.9 55 63.6
FAN09G3899 Fragaria x ananassa HOM05D004953 ORTHO05D006193 2.7e-10 72.0 55 61.8
Peaxi162Scf00132g00233 Petunia axillaris HOM05D001229 ORTHO05D005418 2.3e-09 68.9 91 42.9
SMO203G0177 Selaginella moellendorffii HOM05D004953 ORTHO05D006193 1.5e-08 66.2 169 28.4
Actinidia04704 Actinidia chinensis HOM05D004953 ORTHO05D006193 1.8e-06 59.3 240 26.7
ATR0580G291 Amborella trichopoda HOM05D004953 ORTHO05D006193 7.0e-06 57.4 67 40.3


User provided reference genes

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