Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0001160 Simmondsia chinensis HOM05D000921 ORTHO05D004153 0.0e+00 1517.7 789 100.0
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 1.4e-305 1052.7 753 74.5
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 5.4e-294 1014.2 758 70.8
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 9.1e-294 1013.4 770 71.7
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 2.7e-293 1011.9 755 72.2
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 5.9e-293 1010.7 757 71.5
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 7.7e-293 1010.4 760 71.8
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 2.3e-292 1008.8 746 71.7
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 1.1e-291 1006.5 750 71.5
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 9.5e-291 1003.4 757 70.5
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 2.8e-290 1001.9 762 71.4
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 4.7e-290 1001.1 760 69.5
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 6.1e-290 1000.7 746 71.7
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 4.0e-289 998.0 762 70.7
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 3.4e-288 995.0 759 70.9
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 4.4e-288 994.6 762 71.1
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 2.2e-287 992.3 757 70.7
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 3.7e-287 991.5 753 69.1
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 6.3e-287 990.7 750 71.1
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 1.8e-286 989.2 753 68.7
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 9.2e-286 986.9 765 68.8
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 1.6e-285 986.1 758 70.8
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 3.5e-285 984.9 751 71.0
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 7.8e-285 983.8 760 69.2
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 1.0e-284 983.4 762 70.1
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 2.9e-284 981.9 758 68.3
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 2.9e-284 981.9 764 69.1
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 5.0e-284 981.1 758 70.8
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 6.6e-284 980.7 764 69.2
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 1.1e-283 979.9 751 69.9
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 4.3e-283 978.0 751 70.6
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 5.6e-283 977.6 762 69.7
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 5.6e-283 977.6 811 65.8
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 7.3e-283 977.2 764 69.4
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 1.6e-282 976.1 755 68.3
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 1.6e-282 976.1 752 70.3
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 2.1e-282 975.7 750 68.5
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 2.1e-282 975.7 694 75.2
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 3.6e-282 974.9 762 69.6
FAN27G1722 Fragaria x ananassa HOM05D000921 ORTHO05D004153 3.6e-282 974.9 763 69.3
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 6.1e-282 974.2 756 70.4
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 8.0e-282 973.8 749 70.0
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 1.4e-281 973.0 750 68.3
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 1.8e-281 972.6 754 69.0
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 3.0e-281 971.8 757 70.8
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 8.9e-281 970.3 755 67.9
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 1.5e-280 969.5 750 67.9
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 2.0e-280 969.1 750 67.9
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 2.6e-280 968.8 746 70.5
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 4.9e-279 964.5 745 69.3
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 6.4e-279 964.1 751 68.4
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 5.4e-278 961.1 746 70.2
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 7.0e-278 960.7 746 70.2
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 9.2e-278 960.3 746 68.6
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 9.2e-278 960.3 772 68.0
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 2.0e-277 959.1 765 68.4
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 2.7e-277 958.7 754 68.8
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 3.5e-277 958.4 755 67.7
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 4.6e-277 958.0 749 69.7
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 4.6e-277 958.0 751 69.1
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 7.8e-277 957.2 753 69.3
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 1.0e-276 956.8 798 65.4
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 1.0e-276 956.8 754 69.6
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 1.7e-276 956.1 752 69.9
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 2.3e-276 955.7 756 68.3
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 6.6e-276 954.1 754 66.8
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 8.6e-276 953.7 755 66.8
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 1.1e-275 953.4 752 67.6
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 1.1e-275 953.4 752 67.6
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 2.5e-275 952.2 747 68.0
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 3.3e-275 951.8 751 67.2
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 7.3e-275 950.7 760 67.9
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 7.3e-275 950.7 747 67.9
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 9.5e-275 950.3 749 68.4
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 2.8e-274 948.7 764 68.1
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 3.6e-274 948.3 754 67.9
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 5.2e-273 944.5 747 67.5
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 8.9e-273 943.7 758 67.5
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 8.9e-273 943.7 758 67.7
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 1.5e-272 943.0 817 64.4
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 4.4e-272 941.4 748 68.4
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 3.7e-271 938.3 703 71.0
arahy.Tifrunner.gnm1.ann1.0T0464 Arachis hypogaea HOM05D000921 ORTHO05D004153 8.3e-271 937.2 761 67.1
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 2.0e-269 932.6 696 70.4
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 3.9e-268 928.3 754 66.7
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 1.5e-267 926.4 799 64.3
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 5.6e-267 924.5 756 66.3
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 1.2e-266 923.3 757 66.3
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 8.1e-266 920.6 765 66.7
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 8.9e-265 917.1 749 65.6
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 4.4e-264 914.8 756 65.9
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 7.5e-264 914.1 758 65.6
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 2.0e-256 889.4 640 72.8
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 2.0e-256 889.4 751 64.0
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 4.4e-256 888.3 754 64.1
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 1.2e-253 880.2 751 63.2
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 6.6e-252 874.4 752 64.4
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 8.1e-250 867.5 748 62.3
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 6.9e-249 864.4 760 62.0
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 1.2e-248 863.6 747 62.9
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 2.6e-248 862.4 697 66.3
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 1.3e-247 860.1 760 62.8
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 1.4e-246 856.7 749 64.1
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 9.3e-246 854.0 755 63.8
Os03g0744675 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004153 1.2e-245 853.6 700 65.0
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 1.3e-244 850.1 754 61.9
Lj1C56G7 Lonicera japonica HOM05D000921 ORTHO05D004153 3.9e-244 848.6 694 65.0
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 1.1e-243 847.0 747 62.5
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 5.6e-243 844.7 747 62.4
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 8.1e-242 840.9 786 59.5
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 4.0e-241 838.6 751 62.3
BcaB01g02482 Brassica carinata HOM05D000921 ORTHO05D004153 2.0e-240 836.3 750 60.9
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 3.8e-239 832.0 799 58.1
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 6.4e-239 831.2 750 61.1
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 1.2e-237 827.0 697 63.1
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 2.3e-236 822.8 704 62.6
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 1.9e-235 819.7 751 62.7
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 2.8e-234 815.8 760 59.7
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 3.7e-234 815.5 627 70.7
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 1.1e-233 813.9 761 60.8
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 5.3e-233 811.6 744 61.4
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 6.2e-226 788.1 673 63.2
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 2.9e-223 779.2 755 57.6
CDE04G0357 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 2.5e-222 776.2 749 58.1
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 2.5e-219 766.1 750 60.0
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 1.6e-218 763.5 747 59.3
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 3.7e-218 762.3 749 57.5
HPP92_021305 Vanilla planifolia HOM05D000921 ORTHO05D004153 2.2e-207 726.5 744 56.3
CDE10G0697 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 1.4e-177 627.5 676 53.3
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 8.9e-156 555.1 513 59.6
Gohir.D08G055580 Gossypium hirsutum HOM05D000921 ORTHO05D004153 9.2e-153 545.0 427 67.0
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 7.1e-145 518.8 393 70.5
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 9.2e-145 518.5 629 48.8
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 1.9e-142 510.8 773 42.7
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 6.9e-132 475.7 694 41.9
Oeu002265.1 Olea europaea HOM05D000921 ORTHO05D004153 4.4e-131 473.0 531 52.7
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.0e-123 447.6 707 40.3
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.0e-123 447.6 707 40.3
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.1e-121 441.8 866 36.8
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 1.9e-121 441.0 587 46.3
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.8e-117 427.2 869 35.8
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.8e-117 427.2 869 35.8
VMungo0720G2500 Vigna mungo HOM05D000921 ORTHO05D015533 6.9e-116 422.5 322 70.2
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.6e-115 420.6 774 37.0
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.6e-115 420.6 774 37.0
CAN.G1355.10 Capsicum annuum HOM05D000921 ORTHO05D004153 8.2e-93 345.9 365 56.7
CBR_g29440 Chara braunii HOM05D000921 ORTHO05D004153 3.1e-84 317.4 818 31.5
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 4.4e-78 297.0 200 76.0
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 1.2e-72 278.9 199 71.4
C03p37690 Brassica napus HOM05D000921 ORTHO05D015533 3.5e-43 181.0 177 55.4
BolC3t16058H Brassica oleracea HOM05D000921 ORTHO05D015533 3.5e-43 181.0 177 55.4
BraA03t12270Z Brassica rapa HOM05D000921 ORTHO05D015533 4.3e-41 174.1 177 54.8
A03p30910 Brassica napus HOM05D000921 ORTHO05D015533 1.6e-40 172.2 177 54.2
Lsat_1_v5_gn_1_120240 Lactuca sativa HOM05D000921 ORTHO05D036458 3.1e-39 167.9 167 56.9
SEGI_07899 Sequoiadendron giganteum HOM05D000921 ORTHO05D015533 2.0e-38 165.2 141 59.6
Lsat_1_v5_gn_1_73041 Lactuca sativa HOM05D002056 ORTHO05D036458 4.3e-33 147.5 155 54.8
HanXRQChr02g0052171 Helianthus annuus HOM05D000921 ORTHO05D015533 1.1e-23 116.3 170 44.1
Gohir.A08G045250 Gossypium hirsutum HOM05D000921 ORTHO05D015533 2.0e-22 112.1 107 64.5
Gohir.D08G055560 Gossypium hirsutum HOM05D000921 ORTHO05D015533 3.4e-22 111.3 107 64.5
Lsat_1_v5_gn_1_120080 Lactuca sativa HOM05D001785 ORTHO05D001933 4.0e-15 87.8 94 56.4
FvH4_1g23851 Fragaria vesca HOM05D000921 ORTHO05D045821 4.9e-13 80.9 45 82.2
Glyma.10G030300 Glycine max HOM05D000921 ORTHO05D015037 4.2e-12 77.8 72 61.1
Psat0s5953g0080 Pisum sativum HOM05D001390 ORTHO05D015037 4.2e-12 77.8 51 72.5
Psat7g116160 Pisum sativum HOM05D002786 ORTHO05D015037 5.4e-12 77.4 63 60.3
Gorai.012G075400 Gossypium raimondii HOM05D000921 ORTHO05D015533 9.3e-12 76.6 43 81.4
FvH4_3g33661 Fragaria vesca HOM05D000921 ORTHO05D198257 1.5e-09 69.3 44 70.5
VMungo1309G1394 Vigna mungo HOM05D001853 ORTHO05D015533 1.5e-09 69.3 71 56.3
MD11G1312300 Malus domestica HOM05D000921 ORTHO05D045821 1.8e-07 62.4 39 66.7
Gohir.A08G187250 Gossypium hirsutum HOM05D000921 ORTHO05D015533 6.9e-07 60.5 89 51.7


User provided reference genes

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