Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0001150 Simmondsia chinensis HOM05D000921 ORTHO05D015037 5.3e-145 517.7 265 100.0
EL10Ac5g10491 Beta vulgaris HOM05D000921 ORTHO05D004153 3.0e-100 369.0 243 77.0
AUR62011970 Chenopodium quinoa HOM05D000921 ORTHO05D004153 3.0e-100 369.0 252 75.4
AUR62032282 Chenopodium quinoa HOM05D000921 ORTHO05D004153 5.2e-100 368.2 243 78.2
Sc05g0001320 Simmondsia chinensis HOM05D000921 ORTHO05D004153 5.2e-100 368.2 243 79.4
Ah.11g050210 Amaranthus hybridus HOM05D000921 ORTHO05D004153 4.4e-99 365.2 243 78.2
Hund02865 Selenicereus undatus HOM05D000921 ORTHO05D004153 4.8e-98 361.7 252 73.4
Hund09551 Selenicereus undatus HOM05D000921 ORTHO05D004153 2.4e-97 359.4 243 76.1
COL.COLO4_09186 Corchorus olitorius HOM05D000921 ORTHO05D004153 1.6e-93 346.7 245 72.2
TWI18G0154 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 1.6e-93 346.7 245 73.1
QL12p042334 Quercus lobata HOM05D000921 ORTHO05D004153 1.0e-92 344.0 245 74.3
Haze_04641 Corylus avellana HOM05D000921 ORTHO05D004153 1.4e-92 343.6 259 70.3
Cfa006203 Carpinus fangiana HOM05D000921 ORTHO05D004153 4.0e-92 342.0 259 70.3
FvH4_2g22920 Fragaria vesca HOM05D000921 ORTHO05D004153 6.8e-92 341.3 245 74.3
Prupe.8G234500 Prunus persica HOM05D000921 ORTHO05D004153 8.9e-92 340.9 245 74.3
MD03G1257800 Malus domestica HOM05D000921 ORTHO05D004153 1.5e-91 340.1 245 72.7
FAN20G3205 Fragaria x ananassa HOM05D000921 ORTHO05D004153 2.0e-91 339.7 245 73.5
Thecc.01G271200 Theobroma cacao HOM05D000921 ORTHO05D004153 2.0e-91 339.7 245 71.4
FAN24G0847 Fragaria x ananassa HOM05D000921 ORTHO05D004153 3.4e-91 339.0 245 73.9
RcHm_v2.0_Chr6g0289881 Rosa chinensis HOM05D000921 ORTHO05D004153 3.4e-91 339.0 245 73.9
FAN27G1722 Fragaria x ananassa HOM05D000921 ORTHO05D004153 4.4e-91 338.6 245 73.5
FAN15G1223 Fragaria x ananassa HOM05D000921 ORTHO05D004153 7.5e-91 337.8 245 73.5
TWI12G1077 Tripterygium wilfordii HOM05D000921 ORTHO05D004153 7.5e-91 337.8 245 72.2
CSS0032745 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 2.2e-90 336.3 245 71.4
Actinidia19962 Actinidia chinensis HOM05D000921 ORTHO05D004153 1.4e-89 333.6 245 69.8
Duzib133G0456 Durio zibethinus HOM05D000921 ORTHO05D004153 1.8e-89 333.2 245 70.6
Oeu038250.1 Olea europaea HOM05D000921 ORTHO05D015037 2.4e-89 332.8 241 70.1
Atru.chr5.1523 Acer truncatum HOM05D000921 ORTHO05D004153 4.1e-89 332.0 245 69.8
MD11G1278500 Malus domestica HOM05D000921 ORTHO05D004153 4.1e-89 332.0 245 71.4
Gohir.D11G131000 Gossypium hirsutum HOM05D000921 ORTHO05D004153 5.4e-89 331.6 245 69.4
Duzib138G1896 Durio zibethinus HOM05D000921 ORTHO05D004153 1.2e-88 330.5 245 70.2
Hma1.2p1_0760F.1_g214090 Hydrangea macrophylla HOM05D000921 ORTHO05D004153 1.2e-88 330.5 245 69.8
Potri.002G047700 Populus trichocarpa HOM05D000921 ORTHO05D004153 1.6e-88 330.1 244 70.1
Gorai.007G140000 Gossypium raimondii HOM05D000921 ORTHO05D004153 2.7e-88 329.3 237 70.0
Cpa.g.sc52.120 Carica papaya HOM05D000921 ORTHO05D004153 3.5e-88 328.9 259 68.0
Dinv22500 Davidia involucrata HOM05D000921 ORTHO05D004153 3.5e-88 328.9 254 68.5
Rhsim13G0028700 Rhododendron simsii HOM05D000921 ORTHO05D004153 3.5e-88 328.9 244 70.1
TAR633G0413 Trochodendron aralioides HOM05D000921 ORTHO05D004153 3.5e-88 328.9 248 71.0
Actinidia09105 Actinidia chinensis HOM05D000921 ORTHO05D004153 7.8e-88 327.8 245 69.4
Lj1C56G6 Lonicera japonica HOM05D000921 ORTHO05D004153 1.0e-87 327.4 235 72.3
CiPaw.07G086700 Carya illinoinensis HOM05D000921 ORTHO05D004153 1.7e-87 326.6 243 69.1
vmacro02613 Vaccinium macrocarpon HOM05D000921 ORTHO05D004153 1.7e-87 326.6 244 69.3
Manes.01G203800 Manihot esculenta HOM05D000921 ORTHO05D004153 2.3e-87 326.2 244 69.3
Potri.005G215400 Populus trichocarpa HOM05D000921 ORTHO05D004153 2.3e-87 326.2 245 68.6
Cc01_g18990 Coffea canephora HOM05D000921 ORTHO05D004153 2.9e-87 325.9 245 70.6
Dinv32883 Davidia involucrata HOM05D000921 ORTHO05D004153 2.9e-87 325.9 245 70.2
Nn6g33594 Nelumbo nucifera HOM05D000921 ORTHO05D004153 3.9e-87 325.5 248 69.4
Lj2C1164G7 Lonicera japonica HOM05D000921 ORTHO05D004153 6.6e-87 324.7 246 70.3
CAN.G1072.6 Capsicum annuum HOM05D000921 ORTHO05D004153 8.6e-87 324.3 245 67.8
Nitab4.5_0000459g0090 Nicotiana tabacum HOM05D000921 ORTHO05D004153 8.6e-87 324.3 260 64.6
Sabra02G0038900 Salix brachista HOM05D000921 ORTHO05D004153 8.6e-87 324.3 243 69.1
Lalb_Chr06g0162771 Lupinus albus HOM05D000921 ORTHO05D004153 1.1e-86 323.9 245 69.8
CSS0010203 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 1.9e-86 323.2 254 66.1
CSS0042369 Camellia sinensis var. sinensis HOM05D000921 ORTHO05D004153 1.9e-86 323.2 254 66.1
Peaxi162Scf00259g00414 Petunia axillaris HOM05D000921 ORTHO05D004153 1.9e-86 323.2 245 69.0
CANSAT25G1208 Cannabis sativa HOM05D000921 ORTHO05D004153 2.5e-86 322.8 245 69.4
Gohir.A11G125600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 4.3e-86 322.0 237 69.2
Glyma.02G144200 Glycine max HOM05D000921 ORTHO05D004153 7.3e-86 321.2 245 70.2
Lj5g0027434 Lotus japonicus HOM05D000921 ORTHO05D004153 7.3e-86 321.2 245 68.6
Nitab4.5_0003424g0020 Nicotiana tabacum HOM05D000921 ORTHO05D004153 9.5e-86 320.9 245 67.3
BraA09t42173Z Brassica rapa HOM05D000921 ORTHO05D004153 2.1e-85 319.7 245 65.3
Ciclev10018426m.g Citrus clementina HOM05D000921 ORTHO05D004153 2.1e-85 319.7 246 67.9
arahy.Tifrunner.gnm1.ann1.BY50EL Arachis hypogaea HOM05D000921 ORTHO05D004153 3.6e-85 318.9 245 68.2
A09p68370 Brassica napus HOM05D000921 ORTHO05D004153 3.6e-85 318.9 245 65.3
Phvul.007G175300 Phaseolus vulgaris HOM05D000921 ORTHO05D004153 3.6e-85 318.9 245 68.6
BolC8t52810H Brassica oleracea HOM05D000921 ORTHO05D004153 4.7e-85 318.5 247 64.0
Sabra05G0164600 Salix brachista HOM05D000921 ORTHO05D004153 4.7e-85 318.5 244 67.2
Gorai.004G056400 Gossypium raimondii HOM05D000921 ORTHO05D004153 6.1e-85 318.2 259 64.9
arahy.Tifrunner.gnm1.ann1.0T0464 Arachis hypogaea HOM05D000921 ORTHO05D004153 8.0e-85 317.8 245 67.8
Glyma.10G030000 Glycine max HOM05D000921 ORTHO05D004153 1.0e-84 317.4 245 69.0
Sopen09g027450 Solanum pennellii HOM05D000921 ORTHO05D004153 1.0e-84 317.4 245 66.1
A10p01690 Brassica napus HOM05D000921 ORTHO05D004153 1.4e-84 317.0 245 64.5
C08p52940 Brassica napus HOM05D000921 ORTHO05D004153 1.4e-84 317.0 245 64.5
BraA10t42445Z Brassica rapa HOM05D000921 ORTHO05D004153 1.4e-84 317.0 245 64.5
Medtr1g071260 Medicago truncatula HOM05D000921 ORTHO05D004153 1.8e-84 316.6 245 67.3
ClCG09G007420 Citrullus lanatus HOM05D000921 ORTHO05D004153 2.3e-84 316.2 245 69.0
Solyc09g065700.3 Solanum lycopersicum HOM05D000921 ORTHO05D004153 3.1e-84 315.8 245 66.5
Psat6g058840 Pisum sativum HOM05D000921 ORTHO05D004153 4.0e-84 315.5 245 68.6
Sp1g02060 Schrenkiella parvula HOM05D000921 ORTHO05D004153 5.2e-84 315.1 244 64.3
Aa31LG1G9470 Aethionema arabicum HOM05D000921 ORTHO05D004153 6.8e-84 314.7 246 64.2
DCAR_002700 Daucus carota HOM05D000921 ORTHO05D004153 8.9e-84 314.3 245 66.1
TPR.G34892 Trifolium pratense HOM05D000921 ORTHO05D004153 8.9e-84 314.3 245 66.9
Ca_09726_v3 Cicer arietinum L. HOM05D000921 ORTHO05D004153 1.2e-83 313.9 244 68.4
AL6G50380 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 2.0e-83 313.2 235 66.0
Carub.0006s3446 Capsella rubella HOM05D000921 ORTHO05D004153 2.0e-83 313.2 259 62.9
BcaC07g42269 Brassica carinata HOM05D000921 ORTHO05D004153 2.6e-83 312.8 243 63.8
C05p01680 Brassica napus HOM05D000921 ORTHO05D004153 2.6e-83 312.8 245 63.7
BolC5t28947H Brassica oleracea HOM05D000921 ORTHO05D004153 2.6e-83 312.8 245 63.7
BcaB03g15744 Brassica carinata HOM05D000921 ORTHO05D004153 3.4e-83 312.4 233 66.1
CARHR002410 Cardamine hirsuta HOM05D000921 ORTHO05D004153 3.4e-83 312.4 245 63.7
CsaV3_7G027700 Cucumis sativus L. HOM05D000921 ORTHO05D004153 3.4e-83 312.4 245 68.2
Thhalv10006519m.g Eutrema salsugineum HOM05D000921 ORTHO05D004153 3.4e-83 312.4 245 64.1
Migut.D00355 Erythranthe guttata HOM05D000921 ORTHO05D004153 4.4e-83 312.0 245 67.8
AL1G12520 Arabidopsis lyrata HOM05D000921 ORTHO05D004153 5.8e-83 311.6 245 62.9
MELO3C015783.2 Cucumis melo HOM05D000921 ORTHO05D004153 7.5e-83 311.2 245 67.8
PSO210G1924 Papaver somniferum HOM05D000921 ORTHO05D004153 1.3e-82 310.5 247 67.2
MSTRG.21525 Avicennia marina HOM05D000921 ORTHO05D004153 1.7e-82 310.1 245 66.5
ECA248G3113 Erigeron canadensis HOM05D000921 ORTHO05D004153 1.7e-82 310.1 252 64.7
AT1G03060 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 2.9e-82 309.3 246 62.6
Gohir.D08G205600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 3.7e-82 308.9 257 65.0
SGA_v2.0_scaffold1G00535 Striga asiatica HOM05D000921 ORTHO05D004153 3.7e-82 308.9 245 66.1
Nn1g00513 Nelumbo nucifera HOM05D000921 ORTHO05D004153 4.9e-82 308.5 248 67.3
Carub.0001s0220 Capsella rubella HOM05D000921 ORTHO05D004153 6.4e-82 308.1 245 62.0
Lsat_1_v5_gn_5_185441 Lactuca sativa HOM05D000921 ORTHO05D004153 6.4e-82 308.1 245 66.5
Eucgr.K03323 Eucalyptus grandis HOM05D000921 ORTHO05D004153 1.1e-81 307.4 245 66.1
Gorai.004G217600 Gossypium raimondii HOM05D000921 ORTHO05D004153 1.9e-81 306.6 256 64.8
Sed0015319 Sechium edule HOM05D000921 ORTHO05D004153 3.2e-81 305.8 245 67.3
CARHR250960 Cardamine hirsuta HOM05D000921 ORTHO05D004153 4.1e-81 305.4 245 62.9
PGR044G0864 Punica granatum HOM05D000921 ORTHO05D004153 4.1e-81 305.4 245 64.9
AT4G02660 Arabidopsis thaliana HOM05D000921 ORTHO05D004153 1.6e-80 303.5 244 61.9
ATR0665G073 Amborella trichopoda HOM05D000921 ORTHO05D004153 4.6e-80 302.0 259 63.3
Aqoxy5G00390 Aquilegia oxysepala HOM05D000921 ORTHO05D004153 7.8e-80 301.2 247 65.6
HanXRQChr01g0005671 Helianthus annuus HOM05D000921 ORTHO05D004153 7.8e-80 301.2 243 65.4
THA.LOC104825985 Tarenaya hassleriana HOM05D000921 ORTHO05D004153 7.8e-80 301.2 246 63.8
SalBow4G3326 Salvia bowleyana HOM05D000921 ORTHO05D004153 1.0e-79 300.8 245 64.1
HanXRQChr06g0177821 Helianthus annuus HOM05D000921 ORTHO05D004153 2.3e-79 299.7 243 64.2
Zm00001eb056940 Zea mays HOM05D000921 ORTHO05D004153 2.3e-79 299.7 246 64.6
Lalb_Chr01g0019981 Lupinus albus HOM05D000921 ORTHO05D004153 1.5e-78 297.0 245 64.9
BcaB01g02482 Brassica carinata HOM05D000921 ORTHO05D004153 3.3e-78 295.8 245 60.8
Os03g0744675 Oryza sativa ssp. japonica HOM05D000921 ORTHO05D004153 3.3e-78 295.8 246 63.4
Sp6g02580 Schrenkiella parvula HOM05D000921 ORTHO05D004153 9.5e-78 294.3 245 61.2
BcaC01g06740 Brassica carinata HOM05D000921 ORTHO05D004153 2.8e-77 292.7 245 60.0
arahy.Tifrunner.gnm1.ann1.IAH9UB Arachis hypogaea HOM05D000921 ORTHO05D004153 3.1e-76 289.3 245 61.2
arahy.Tifrunner.gnm1.ann1.EGZY1N Arachis hypogaea HOM05D000921 ORTHO05D004153 6.8e-76 288.1 245 60.8
HanXRQChr04g0113931 Helianthus annuus HOM05D000921 ORTHO05D004153 2.7e-72 276.2 244 57.8
Lsat_1_v5_gn_8_93941 Lactuca sativa HOM05D000921 ORTHO05D004153 3.5e-72 275.8 246 58.9
SEGI_18450 Sequoiadendron giganteum HOM05D000921 ORTHO05D004153 4.6e-72 275.4 258 57.8
ECA236G3737 Erigeron canadensis HOM05D000921 ORTHO05D004153 1.0e-71 274.2 244 58.2
CDE04G0357 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 6.6e-71 271.6 247 58.7
PSO461G0055 Papaver somniferum HOM05D000921 ORTHO05D004153 2.6e-67 259.6 238 58.8
GSVIVG01003123001 Vitis vinifera HOM05D000921 ORTHO05D004153 8.6e-63 244.6 233 57.9
SHI10018 Sapria himalayana HOM05D000921 ORTHO05D004153 2.5e-62 243.0 245 54.3
CDE10G0697 Ceratophyllum demersum HOM05D000921 ORTHO05D004153 1.3e-58 230.7 244 51.6
CAN.G1355.7 Capsicum annuum HOM05D000921 ORTHO05D015037 1.9e-54 216.9 160 68.8
Gohir.D03G068300 Gossypium hirsutum HOM05D000921 ORTHO05D015037 9.9e-51 204.5 156 67.3
Gorai.003G092300 Gossypium raimondii HOM05D000921 ORTHO05D015037 9.9e-51 204.5 156 67.9
Gorai.004G093100 Gossypium raimondii HOM05D000921 ORTHO05D015037 5.4e-49 198.7 146 68.5
Gohir.D07G116900 Gossypium hirsutum HOM05D000921 ORTHO05D015037 2.4e-41 173.3 129 69.0
Gohir.D02G156000 Gossypium hirsutum HOM05D000921 ORTHO05D015037 1.2e-40 171.0 129 66.7
unitig_61.g26265 Utricularia gibba HOM05D000921 ORTHO05D004153 2.4e-36 156.8 235 39.6
Mapoly0082s0083 Marchantia polymorpha HOM05D000921 ORTHO05D004153 2.9e-34 149.8 248 37.9
Pp3c6_26100 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.1e-33 147.9 259 38.6
AagrBONN_evm.TU.Sc2ySwM_117.1900 Anthoceros agrestis HOM05D000921 ORTHO05D004153 2.7e-32 143.3 262 38.2
Pp3c5_2890 Physcomitrium patens HOM05D000921 ORTHO05D004153 3.0e-31 139.8 262 38.2
Pp3c5_2897 Physcomitrium patens HOM05D000921 ORTHO05D004153 3.0e-31 139.8 262 38.2
Psat7g116160 Pisum sativum HOM05D002786 ORTHO05D015037 8.2e-29 131.7 93 74.2
Pp3c6_5700 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.8e-28 130.6 272 33.5
Pp3c6_5706 Physcomitrium patens HOM05D000921 ORTHO05D004153 1.8e-28 130.6 272 33.5
Psat0s5953g0080 Pisum sativum HOM05D001390 ORTHO05D015037 5.8e-27 125.6 93 72.0
Pp3c16_11700 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.1e-24 117.1 274 31.0
Pp3c16_11705 Physcomitrium patens HOM05D000921 ORTHO05D004153 2.1e-24 117.1 274 31.0
SMO236G0048 Selaginella moellendorffii HOM05D000921 ORTHO05D004153 1.9e-22 110.5 254 30.7
Lsat_1_v5_gn_4_20061 Lactuca sativa HOM05D000548 ORTHO05D015037 5.7e-22 109.0 185 39.5
HPP92_021305 Vanilla planifolia HOM05D000921 ORTHO05D004153 9.4e-17 91.7 200 33.5
Gohir.D08G055600 Gossypium hirsutum HOM05D000921 ORTHO05D004153 1.6e-16 90.9 81 59.3
Oeu002265.1 Olea europaea HOM05D000921 ORTHO05D004153 1.6e-16 90.9 67 68.7


User provided reference genes

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