Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0001020 Simmondsia chinensis HOM05D000319 ORTHO05D005616 9.3e-147 523.5 255 100.0
Ah.11g049990 Amaranthus hybridus HOM05D000319 ORTHO05D005616 2.4e-134 482.3 255 91.0
EL10Ac5g10471 Beta vulgaris HOM05D000319 ORTHO05D005616 1.7e-132 476.1 255 89.8
AUR62032260 Chenopodium quinoa HOM05D000319 ORTHO05D005616 2.2e-132 475.7 255 90.2
Ciclev10021811m.g Citrus clementina HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 88.2
Manes.01G201800 Manihot esculenta HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 89.0
Manes.14G005900 Manihot esculenta HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 89.0
TWI18G1113 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 4.9e-132 474.6 255 88.6
AUR62011945 Chenopodium quinoa HOM05D000319 ORTHO05D005616 1.9e-131 472.6 255 89.8
Lj3g0018932 Lotus japonicus HOM05D000319 ORTHO05D005616 2.5e-131 472.2 255 89.4
Gohir.A08G045400 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.5e-131 471.1 255 87.8
Gohir.D08G055800 Gossypium hirsutum HOM05D000319 ORTHO05D005616 5.5e-131 471.1 255 87.8
Duzib211G0655 Durio zibethinus HOM05D000319 ORTHO05D005616 7.1e-131 470.7 255 87.8
Thecc.01G267900 Theobroma cacao HOM05D000319 ORTHO05D005616 1.6e-130 469.5 255 88.2
TWI75G0800 Tripterygium wilfordii HOM05D000319 ORTHO05D005616 3.5e-130 468.4 255 87.1
MSTRG.18283 Avicennia marina HOM05D000319 ORTHO05D005616 4.6e-130 468.0 255 89.0
Atru.chr5.1559 Acer truncatum HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 87.5
Gorai.004G056700 Gossypium raimondii HOM05D000319 ORTHO05D005616 6.0e-130 467.6 255 86.7
COL.COLO4_06081 Corchorus olitorius HOM05D000319 ORTHO05D005616 1.3e-129 466.5 255 87.5
Nn1g02549 Nelumbo nucifera HOM05D000319 ORTHO05D005616 1.3e-129 466.5 252 88.9
HanXRQChr15g0467021 Helianthus annuus HOM05D000319 ORTHO05D005616 1.8e-129 466.1 255 87.8
Lsat_1_v5_gn_9_8201 Lactuca sativa HOM05D000319 ORTHO05D005616 1.8e-129 466.1 255 87.1
Rhsim13G0030900 Rhododendron simsii HOM05D000319 ORTHO05D005616 3.0e-129 465.3 255 87.5
CiPaw.05G169400 Carya illinoinensis HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 88.2
CiPaw.06G060900 Carya illinoinensis HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 87.8
Duzib138G1611 Durio zibethinus HOM05D000319 ORTHO05D005616 5.1e-129 464.5 255 87.5
Potri.002G045200 Populus trichocarpa HOM05D000319 ORTHO05D005616 8.7e-129 463.8 255 87.1
Cfa008743 Carpinus fangiana HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 87.1
Dinv34565 Davidia involucrata HOM05D000319 ORTHO05D005616 1.1e-128 463.4 255 87.1
TAR365G0186 Trochodendron aralioides HOM05D000319 ORTHO05D005616 1.1e-128 463.4 252 88.1
Haze_11759 Corylus avellana HOM05D000319 ORTHO05D005616 1.5e-128 463.0 255 87.1
Eucgr.K03315 Eucalyptus grandis HOM05D000319 ORTHO05D005616 1.9e-128 462.6 255 87.1
GSVIVG01000718001 Vitis vinifera HOM05D000319 ORTHO05D005616 2.5e-128 462.2 255 85.9
Cc01_g18870 Coffea canephora HOM05D000319 ORTHO05D005616 4.3e-128 461.5 255 87.8
Hund09567 Selenicereus undatus HOM05D000319 ORTHO05D005616 7.4e-128 460.7 255 86.7
THA.LOC104825981 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 7.4e-128 460.7 256 87.1
Actinidia19981 Actinidia chinensis HOM05D000319 ORTHO05D005616 1.3e-127 459.9 255 86.3
CSS0020063 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.3e-127 459.9 255 85.5
Ca_01047_v3 Cicer arietinum L. HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 86.3
Potri.005G218000 Populus trichocarpa HOM05D000319 ORTHO05D005616 1.6e-127 459.5 255 87.1
Cpa.g.sc52.96 Carica papaya HOM05D000319 ORTHO05D005616 8.2e-127 457.2 255 85.9
Migut.D00371 Erythranthe guttata HOM05D000319 ORTHO05D005616 1.1e-126 456.8 255 85.9
arahy.Tifrunner.gnm1.ann1.69SMRU Arachis hypogaea HOM05D000319 ORTHO05D005616 2.4e-126 455.7 255 86.3
ClCG07G012250 Citrullus lanatus HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 85.5
Sed0023498 Sechium edule HOM05D000319 ORTHO05D005616 4.0e-126 454.9 255 85.9
ECA247G3951 Erigeron canadensis HOM05D000319 ORTHO05D005616 5.3e-126 454.5 256 86.3
MELO3C017843.2 Cucumis melo HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 85.1
SGA_v2.0_scaffold1G00552 Striga asiatica HOM05D000319 ORTHO05D005616 6.9e-126 454.1 255 85.9
THA.LOC104801256 Tarenaya hassleriana HOM05D000319 ORTHO05D005616 9.0e-126 453.8 257 85.6
SalBow4G3161 Salvia bowleyana HOM05D000319 ORTHO05D005616 2.0e-125 452.6 255 87.1
CANSAT56G1819 Cannabis sativa HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 85.5
Lalb_Chr22g0350801 Lupinus albus HOM05D000319 ORTHO05D005616 3.4e-125 451.8 255 85.9
CAN.G1072.4 Capsicum annuum HOM05D000319 ORTHO05D005616 4.5e-125 451.4 254 84.6
Glyma.15G006400 Glycine max HOM05D000319 ORTHO05D005616 4.5e-125 451.4 255 85.5
Nn3g19503 Nelumbo nucifera HOM05D000319 ORTHO05D005616 4.5e-125 451.4 253 85.8
Glyma.13G367000 Glycine max HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 85.1
TPR.G37240 Trifolium pratense HOM05D000319 ORTHO05D005616 5.8e-125 451.1 255 84.3
Actinidia09093 Actinidia chinensis HOM05D000319 ORTHO05D005616 7.6e-125 450.7 255 84.7
BcaB01g02475 Brassica carinata HOM05D000319 ORTHO05D005616 7.6e-125 450.7 256 86.3
Hma1.2p1_0760F.1_g214240 Hydrangea macrophylla HOM05D000319 ORTHO05D005616 7.6e-125 450.7 256 84.4
PSO832G0193 Papaver somniferum HOM05D000319 ORTHO05D005616 1.0e-124 450.3 256 84.0
PGR044G1796 Punica granatum HOM05D000319 ORTHO05D005616 1.0e-124 450.3 256 85.2
A09p02000 Brassica napus HOM05D000319 ORTHO05D000903 1.3e-124 449.9 253 87.0
CsaV3_4G001900 Cucumis sativus L. HOM05D000319 ORTHO05D005616 1.3e-124 449.9 255 84.3
RcHm_v2.0_Chr2g0134501 Rosa chinensis HOM05D000319 ORTHO05D005616 1.7e-124 449.5 255 84.7
BcaC04g23998 Brassica carinata HOM05D000319 ORTHO05D000903 2.2e-124 449.1 253 87.0
C09p02100 Brassica napus HOM05D000319 ORTHO05D000903 2.2e-124 449.1 253 87.0
Nitab4.5_0003053g0020 Nicotiana tabacum HOM05D000319 ORTHO05D005616 2.2e-124 449.1 254 84.6
Sp6g02490 Schrenkiella parvula HOM05D000319 ORTHO05D005616 2.2e-124 449.1 256 85.5
Thhalv10028900m.g Eutrema salsugineum HOM05D000319 ORTHO05D005616 2.9e-124 448.7 256 85.9
Lj2A1160T39 Lonicera japonica HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 84.3
Phvul.005G179400 Phaseolus vulgaris HOM05D000319 ORTHO05D005616 2.9e-124 448.7 255 85.1
A03p30990 Brassica napus HOM05D000319 ORTHO05D000903 3.8e-124 448.4 253 86.6
Nitab4.5_0000187g0170 Nicotiana tabacum HOM05D000319 ORTHO05D005616 3.8e-124 448.4 254 84.3
PSO210G0711 Papaver somniferum HOM05D000319 ORTHO05D005616 3.8e-124 448.4 256 83.6
Medtr2g104110 Medicago truncatula HOM05D000319 ORTHO05D005616 4.9e-124 448.0 255 83.9
BcaB01g02030 Brassica carinata HOM05D000319 ORTHO05D005616 6.5e-124 447.6 253 86.2
unitig_26.g10148 Utricularia gibba HOM05D000319 ORTHO05D005616 8.4e-124 447.2 250 86.8
CDE06G1797 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.4e-123 446.4 258 82.9
Prupe.3G092100 Prunus persica HOM05D000319 ORTHO05D005616 1.4e-123 446.4 255 84.7
Sopen09g027620 Solanum pennellii HOM05D000319 ORTHO05D005616 1.4e-123 446.4 253 84.6
BolC9t53140H Brassica oleracea HOM05D000319 ORTHO05D005616 1.9e-123 446.0 256 85.9
Carub.0006s3456 Capsella rubella HOM05D000319 ORTHO05D005616 2.5e-123 445.7 256 85.2
FvH4_6g29310 Fragaria vesca HOM05D000319 ORTHO05D005616 7.1e-123 444.1 255 84.3
MD17G1215900 Malus domestica HOM05D000319 ORTHO05D005616 7.1e-123 444.1 255 83.9
AL6G50470 Arabidopsis lyrata HOM05D000319 ORTHO05D005616 9.3e-123 443.7 256 84.8
BraA09t35850Z Brassica rapa HOM05D000319 ORTHO05D000903 9.3e-123 443.7 253 86.2
PGSC0003DMG400019303 Solanum tuberosum HOM05D000319 ORTHO05D005616 1.2e-122 443.4 253 83.4
Gorai.001G242600 Gossypium raimondii HOM05D000319 ORTHO05D005616 2.7e-122 442.2 255 83.5
Aqoxy5G00356 Aquilegia oxysepala HOM05D000319 ORTHO05D005616 3.5e-122 441.8 252 83.7
CARHR250870 Cardamine hirsuta HOM05D000319 ORTHO05D005616 3.5e-122 441.8 256 84.4
MD17G1216000 Malus domestica HOM05D000319 ORTHO05D005616 7.9e-122 440.7 255 83.1
CDE07G0560 Ceratophyllum demersum HOM05D000319 ORTHO05D005616 1.3e-121 439.9 258 81.4
BolC3t16066H Brassica oleracea HOM05D000319 ORTHO05D005616 1.8e-121 439.5 255 85.1
Gohir.A07G208700 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.8e-121 439.5 250 84.4
Sabra02G0036300 Salix brachista HOM05D000319 ORTHO05D005616 2.3e-121 439.1 306 72.5
AT4G02580 Arabidopsis thaliana HOM05D000319 ORTHO05D005616 6.7e-121 437.6 256 83.6
BcaC01g06747 Brassica carinata HOM05D000319 ORTHO05D000903 6.7e-121 437.6 252 85.7
C03p37760 Brassica napus HOM05D000319 ORTHO05D005616 6.7e-121 437.6 252 85.7
BraA03t12276Z Brassica rapa HOM05D000319 ORTHO05D000903 6.7e-121 437.6 253 85.0
DCAR_018446 Daucus carota HOM05D000319 ORTHO05D005616 1.1e-120 436.8 255 82.7
Aa31LG5G2210 Aethionema arabicum HOM05D000319 ORTHO05D005616 1.5e-120 436.4 256 83.6
FAN14G4091 Fragaria x ananassa HOM05D000319 ORTHO05D005616 4.3e-120 434.9 262 81.7
ATR0665G648 Amborella trichopoda HOM05D000319 ORTHO05D005616 7.4e-120 434.1 255 81.2
Sed0021269 Sechium edule HOM05D000319 ORTHO05D005616 1.3e-119 433.3 255 83.1
Gohir.D07G214600 Gossypium hirsutum HOM05D000319 ORTHO05D005616 2.2e-119 432.6 255 82.0
Psat5g303080 Pisum sativum HOM05D000319 ORTHO05D005616 1.0e-116 423.7 255 80.4
vmacro02626 Vaccinium macrocarpon HOM05D000319 ORTHO05D005616 5.0e-116 421.4 281 74.7
Os05g0509200 Oryza sativa ssp. japonica HOM05D000319 ORTHO05D005616 1.1e-115 420.2 250 79.2
VMungo1080G0987 Vigna mungo HOM05D000319 ORTHO05D005616 1.4e-115 419.9 240 85.8
FAN09G4049 Fragaria x ananassa HOM05D000319 ORTHO05D005616 1.1e-112 410.2 240 83.3
Zm00001eb292370 Zea mays HOM05D000319 ORTHO05D005616 1.1e-112 410.2 238 80.3
SGA_v2.0_scaffold138G35283 Striga asiatica HOM05D000319 ORTHO05D005616 5.7e-112 407.9 294 72.1
HanXRQChr01g0006871 Helianthus annuus HOM05D000319 ORTHO05D005616 3.1e-110 402.1 259 77.6
SMO361G0598 Selaginella moellendorffii HOM05D000319 ORTHO05D005616 1.2e-109 400.2 252 77.8
Dinv22483 Davidia involucrata HOM05D000319 ORTHO05D005616 1.9e-107 392.9 219 85.4
AagrBONN_evm.TU.Sc2ySwM_368.222 Anthoceros agrestis HOM05D000319 ORTHO05D005616 7.9e-106 387.5 229 78.6
MBI11_g38515_MAGBIO Magnolia biondii HOM05D000319 ORTHO05D005616 3.0e-105 385.6 259 75.3
Mapoly0103s0061 Marchantia polymorpha HOM05D000319 ORTHO05D005616 8.8e-105 384.0 250 72.4
arahy.Tifrunner.gnm1.ann1.0F4L5T Arachis hypogaea HOM05D000319 ORTHO05D005616 4.4e-104 381.7 255 75.7
HPP92_010274 Vanilla planifolia HOM05D000319 ORTHO05D005616 2.8e-103 379.0 260 72.3
Pp3c14_11220 Physcomitrium patens HOM05D000319 ORTHO05D005616 5.3e-102 374.8 250 70.8
Pp3c2_9810 Physcomitrium patens HOM05D000319 ORTHO05D005616 9.1e-102 374.0 250 71.6
Pp3c2_9813 Physcomitrium patens HOM05D000319 ORTHO05D005616 9.1e-102 374.0 240 74.2
HPP92_010249 Vanilla planifolia HOM05D000319 ORTHO05D005616 4.5e-101 371.7 260 71.9
Sabra05G0167100 Salix brachista HOM05D000319 ORTHO05D005616 5.9e-101 371.3 319 63.3
Duzib133G0192 Durio zibethinus HOM05D000319 ORTHO05D005616 2.2e-100 369.4 255 72.5
SEGI_22234 Sequoiadendron giganteum HOM05D000319 ORTHO05D005616 1.1e-99 367.1 200 85.5
CBR_g10938 Chara braunii HOM05D000319 ORTHO05D005616 2.1e-98 362.8 251 70.9
CBR_g36360 Chara braunii HOM05D000319 ORTHO05D005616 2.6e-96 355.9 251 69.3
FAN02G2104 Fragaria x ananassa HOM05D000319 ORTHO05D005616 2.9e-92 342.4 240 72.9
BolC2t09938H Brassica oleracea HOM05D000319 ORTHO05D005616 4.1e-86 322.0 254 66.9
QL03p046056 Quercus lobata HOM05D000319 ORTHO05D005616 1.2e-85 320.5 160 93.1
Oeu058799.1 Olea europaea HOM05D000319 ORTHO05D005616 9.4e-83 310.8 162 91.4
PRCOL_00000415 Prasinoderma coloniale HOM05D000319 ORTHO05D005616 2.7e-82 309.3 249 60.6
Solyc09g065830.4 Solanum lycopersicum HOM05D000319 ORTHO05D005616 2.0e-80 303.1 162 87.0
BcaB05g23646 Brassica carinata HOM05D000319 ORTHO05D005616 1.2e-77 293.9 226 69.0
HPP92_010181 Vanilla planifolia HOM05D000319 ORTHO05D005616 6.6e-76 288.1 152 90.8
BcaC03g16149 Brassica carinata HOM05D000319 ORTHO05D005616 8.6e-76 287.7 201 72.6
Lalb_Chr24g0395411 Lupinus albus HOM05D000319 ORTHO05D005616 4.2e-75 285.4 171 81.3
Cre10.g450400 Chlamydomonas reinhardtii HOM05D000319 ORTHO05D005616 1.0e-73 280.8 260 50.8
SGA_v2.0_scaffold580G53039 Striga asiatica HOM05D000319 ORTHO05D005616 2.3e-73 279.6 162 84.6
FAN05G4646 Fragaria x ananassa HOM05D000319 ORTHO05D005616 8.3e-63 244.6 268 53.0
C02p39270 Brassica napus HOM05D000319 ORTHO05D021913 6.2e-58 228.4 135 81.5
CAN.G2529.1 Capsicum annuum HOM05D000319 ORTHO05D005616 6.8e-57 224.9 117 91.5
Carub.0006s0058 Capsella rubella HOM05D000319 ORTHO05D005616 6.4e-55 218.4 116 90.5
Cfa025181 Carpinus fangiana HOM05D000319 ORTHO05D005616 2.3e-52 209.9 229 45.0
Peaxi162Scf00049g02221 Petunia axillaris HOM05D000319 ORTHO05D005616 1.3e-47 194.1 101 93.1
Lj1A57T50 Lonicera japonica HOM05D000319 ORTHO05D005616 8.3e-47 191.4 121 77.7
CSS0010087 Camellia sinensis var. sinensis HOM05D000319 ORTHO05D005616 1.6e-45 187.2 109 83.5
Oeu002275.1 Olea europaea HOM05D000319 ORTHO05D005616 2.5e-43 179.9 165 60.0
Haze_26296 Corylus avellana HOM05D000319 ORTHO05D005616 1.1e-41 174.5 211 46.0
Lalb_Chr24g0395401 Lupinus albus HOM05D000319 ORTHO05D005616 2.4e-38 163.3 84 86.9
Psat5g267520 Pisum sativum HOM05D000319 ORTHO05D005616 4.2e-38 162.5 83 88.0
Gohir.D03G127200 Gossypium hirsutum HOM05D000319 ORTHO05D005616 7.1e-38 161.8 89 85.4
Gorai.007G009700 Gossypium raimondii HOM05D000319 ORTHO05D005616 4.6e-37 159.1 83 89.2
Oeu058801.1 Olea europaea HOM05D000113 ORTHO05D010194 3.9e-36 156.0 100 75.0
Gohir.D08G101900 Gossypium hirsutum HOM05D000319 ORTHO05D005616 1.5e-35 154.1 89 82.0
Gorai.004G109900 Gossypium raimondii HOM05D000319 ORTHO05D005616 3.3e-35 152.9 89 80.9
Gorai.011G177500 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.8e-34 149.1 89 79.8
Gohir.D11G034350 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.1e-33 147.9 75 90.7
QL03p046047 Quercus lobata HOM05D000319 ORTHO05D005616 1.2e-32 144.4 90 77.8
Gorai.007G037200 Gossypium raimondii HOM05D000319 ORTHO05D015684 3.4e-32 142.9 81 84.0
Gohir.D02G148240 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.8e-32 142.1 81 84.0
Gohir.A10G159900 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-30 137.5 75 85.3
Gohir.A12G213400 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-30 137.5 75 85.3
Gohir.D05G290500 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-30 137.5 75 85.3
Gohir.D12G241200 Gossypium hirsutum HOM05D000319 ORTHO05D015684 1.4e-30 137.5 75 85.3
Gorai.008G258400 Gossypium raimondii HOM05D000319 ORTHO05D015684 2.4e-30 136.7 81 80.2
Gohir.A02G064600 Gossypium hirsutum HOM05D000319 ORTHO05D015684 5.4e-30 135.6 75 84.0
Psat2g121280 Pisum sativum HOM05D000319 ORTHO05D005616 1.3e-28 131.0 84 76.2
Gorai.005G095000 Gossypium raimondii HOM05D000319 ORTHO05D015684 1.7e-28 130.6 75 81.3
Gorai.003G111100 Gossypium raimondii HOM05D000319 ORTHO05D015684 4.3e-27 125.9 76 80.3
Gohir.D03G105033 Gossypium hirsutum HOM05D000319 ORTHO05D005616 9.6e-27 124.8 71 83.1
Psat4g011320 Pisum sativum HOM05D000319 ORTHO05D005616 2.0e-24 117.1 82 72.0
GSVIVG01013142001 Vitis vinifera HOM05D000319 ORTHO05D439463 1.3e-10 71.2 49 63.3
Lj1A57T51 Lonicera japonica HOM05D000319 ORTHO05D005616 1.6e-10 70.9 41 80.5


User provided reference genes

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