Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc17g0000180 Simmondsia chinensis HOM05D006460 ORTHO05D008143 7.2e-275 949.9 455 100.0
MD09G1293200 Malus domestica HOM05D006460 ORTHO05D008143 1.3e-180 636.7 469 67.4
Prupe.3G004500 Prunus persica HOM05D006460 ORTHO05D008143 1.3e-180 636.7 473 66.2
GSVIVG01028196001 Vitis vinifera HOM05D006460 ORTHO05D008143 1.1e-179 633.6 450 67.8
QL12p034319 Quercus lobata HOM05D006460 ORTHO05D008143 2.1e-178 629.4 468 66.2
Haze_05122 Corylus avellana HOM05D006460 ORTHO05D008143 1.1e-177 627.1 448 67.6
Duzib138G1376 Durio zibethinus HOM05D006460 ORTHO05D008143 4.0e-177 625.2 456 66.0
CiPaw.04G089700 Carya illinoinensis HOM05D006460 ORTHO05D008143 5.3e-177 624.8 445 68.5
Sabra02G0165800 Salix brachista HOM05D006460 ORTHO05D008143 9.0e-177 624.0 454 66.7
Atru.chr5.915 Acer truncatum HOM05D006460 ORTHO05D008143 1.2e-176 623.6 460 65.7
Potri.002G189800 Populus trichocarpa HOM05D006460 ORTHO05D008143 3.4e-176 622.1 454 67.0
Actinidia21358 Actinidia chinensis HOM05D006460 ORTHO05D008143 4.5e-176 621.7 474 65.4
COL.COLO4_23162 Corchorus olitorius HOM05D006460 ORTHO05D008143 1.7e-175 619.8 457 66.3
TAR362G0080 Trochodendron aralioides HOM05D006460 ORTHO05D008143 3.8e-175 618.6 478 65.3
TWI14G0400 Tripterygium wilfordii HOM05D006460 ORTHO05D008143 6.4e-175 617.8 459 66.7
Gorai.001G146600 Gossypium raimondii HOM05D006460 ORTHO05D008143 8.4e-175 617.5 456 65.6
AUR62024570 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.9e-174 616.3 447 66.9
Gohir.D07G134900 Gossypium hirsutum HOM05D006460 ORTHO05D008143 2.4e-174 615.9 456 65.4
RcHm_v2.0_Chr3g0486571 Rosa chinensis HOM05D006460 ORTHO05D008143 4.2e-174 615.1 476 64.1
AUR62011736 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.1e-173 612.8 450 66.9
Ciclev10001046m.g Citrus clementina HOM05D006460 ORTHO05D008143 7.9e-173 610.9 455 65.7
FvH4_1g26500 Fragaria vesca HOM05D006460 ORTHO05D008143 3.0e-172 609.0 478 63.0
FAN28G1427 Fragaria x ananassa HOM05D006460 ORTHO05D008143 5.1e-172 608.2 480 62.5
Lj1C11T12 Lonicera japonica HOM05D006460 ORTHO05D008143 5.1e-172 608.2 464 64.7
CSS0037090 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.9e-171 606.3 477 63.3
CANSAT56G1882 Cannabis sativa HOM05D006460 ORTHO05D008143 2.5e-171 605.9 462 64.3
Eucgr.H00886 Eucalyptus grandis HOM05D006460 ORTHO05D008143 1.3e-170 603.6 458 65.5
CAN.G100.27 Capsicum annuum HOM05D006460 ORTHO05D008143 1.4e-169 600.1 457 63.5
Nn4g25417 Nelumbo nucifera HOM05D006460 ORTHO05D008143 1.4e-169 600.1 482 63.3
PGR083G0788 Punica granatum HOM05D006460 ORTHO05D008143 2.4e-169 599.4 464 63.8
Cpa.g.sc543.2 Carica papaya HOM05D006460 ORTHO05D008143 3.1e-169 599.0 462 64.5
Migut.D00030 Erythranthe guttata HOM05D006460 ORTHO05D008143 4.0e-169 598.6 462 64.1
Oeu002575.1 Olea europaea HOM05D006460 ORTHO05D008143 1.3e-167 593.6 454 63.7
SalBow6G2760 Salvia bowleyana HOM05D006460 ORTHO05D008143 2.2e-167 592.8 456 63.4
Glyma.07G170000 Glycine max HOM05D006460 ORTHO05D008143 2.9e-167 592.4 450 63.8
vmacro02372 Vaccinium macrocarpon HOM05D006460 ORTHO05D008143 4.9e-167 591.7 520 59.0
Manes.05G010900 Manihot esculenta HOM05D006460 ORTHO05D008143 6.5e-167 591.3 434 66.1
Sed0027463 Sechium edule HOM05D006460 ORTHO05D008143 1.4e-166 590.1 451 63.6
Hund09677 Selenicereus undatus HOM05D006460 ORTHO05D008143 2.5e-166 589.3 459 63.4
Solyc01g068050.3 Solanum lycopersicum HOM05D006460 ORTHO05D008143 5.5e-166 588.2 447 61.7
Lalb_Chr17g0338451 Lupinus albus HOM05D006460 ORTHO05D008143 1.6e-165 586.6 457 61.7
PGSC0003DMG400005211 Solanum tuberosum HOM05D006460 ORTHO05D008143 2.1e-165 586.3 447 61.7
Phvul.003G019300 Phaseolus vulgaris HOM05D006460 ORTHO05D008143 7.9e-165 584.3 451 63.0
C03p38430 Brassica napus HOM05D006460 ORTHO05D008143 1.3e-164 583.6 460 63.5
BcaC01g06799 Brassica carinata HOM05D006460 ORTHO05D008143 3.9e-164 582.0 460 63.0
A03p31440 Brassica napus HOM05D006460 ORTHO05D008143 3.9e-164 582.0 462 62.6
BolC3t16117H Brassica oleracea HOM05D006460 ORTHO05D008143 3.9e-164 582.0 460 63.0
DCAR_012316 Daucus carota HOM05D006460 ORTHO05D008143 8.7e-164 580.9 451 62.1
arahy.Tifrunner.gnm1.ann1.N25L3F Arachis hypogaea HOM05D006460 ORTHO05D008143 1.1e-163 580.5 480 59.2
VMungo1215G1636 Vigna mungo HOM05D006460 ORTHO05D008143 1.9e-163 579.7 451 62.1
BcaB01g02385 Brassica carinata HOM05D006460 ORTHO05D008143 2.5e-163 579.3 455 62.6
Ca_12543_v3 Cicer arietinum L. HOM05D006460 ORTHO05D008143 4.3e-163 578.6 454 61.5
Sp6g01720 Schrenkiella parvula HOM05D006460 ORTHO05D008143 5.7e-163 578.2 465 62.2
Thhalv10028644m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 7.4e-163 577.8 468 60.3
Thhalv10028645m.g Eutrema salsugineum HOM05D006460 ORTHO05D008143 7.4e-163 577.8 468 60.3
Cc01_g21920 Coffea canephora HOM05D006460 ORTHO05D008143 9.7e-163 577.4 457 62.8
ClCG09G004700 Citrullus lanatus HOM05D006460 ORTHO05D008143 2.8e-162 575.9 462 62.1
THA.LOC104801320 Tarenaya hassleriana HOM05D006460 ORTHO05D008143 3.7e-162 575.5 460 61.5
Lj2g0013221 Lotus japonicus HOM05D006460 ORTHO05D008143 6.3e-162 574.7 458 60.7
Nitab4.5_0000222g0270 Nicotiana tabacum HOM05D006460 ORTHO05D008143 6.3e-162 574.7 481 60.1
BraA03t12325Z Brassica rapa HOM05D006460 ORTHO05D008143 8.2e-162 574.3 462 62.3
AT4G01880 Arabidopsis thaliana HOM05D006460 ORTHO05D008143 1.1e-161 573.9 461 62.9
Thecc.01G322200 Theobroma cacao HOM05D006460 ORTHO05D008143 1.4e-161 573.5 460 63.0
arahy.Tifrunner.gnm1.ann1.R72PZK Arachis hypogaea HOM05D006460 ORTHO05D008143 2.4e-161 572.8 487 57.9
CARHR249840 Cardamine hirsuta HOM05D006460 ORTHO05D008143 6.9e-161 571.2 458 62.0
HanXRQChr13g0414441 Helianthus annuus HOM05D006460 ORTHO05D008143 4.5e-160 568.5 442 63.1
Carub.0006s3536 Capsella rubella HOM05D006460 ORTHO05D008143 2.2e-159 566.2 459 60.3
Medtr1g032120 Medicago truncatula HOM05D006460 ORTHO05D008143 1.1e-158 563.9 457 60.4
SGA_v2.0_scaffold417G51258 Striga asiatica HOM05D006460 ORTHO05D008143 1.9e-158 563.1 459 60.3
MSTRG.21724 Avicennia marina HOM05D006460 ORTHO05D008143 5.5e-158 561.6 456 61.8
AL6G51420 Arabidopsis lyrata HOM05D006460 ORTHO05D008143 7.2e-158 561.2 465 61.7
EL10As5g23582 Beta vulgaris HOM05D006460 ORTHO05D008143 7.2e-158 561.2 468 62.4
Aqoxy5G02768 Aquilegia oxysepala HOM05D006460 ORTHO05D008143 1.6e-157 560.1 466 59.9
Gohir.A07G130500 Gossypium hirsutum HOM05D006460 ORTHO05D008143 2.7e-157 559.3 457 62.1
TPR.G36866 Trifolium pratense HOM05D006460 ORTHO05D008143 3.9e-156 555.4 495 57.0
Psat6g046360 Pisum sativum HOM05D006460 ORTHO05D008143 8.7e-156 554.3 460 60.0
FAN26G0500 Fragaria x ananassa HOM05D006460 ORTHO05D008143 9.7e-155 550.8 482 59.3
Rhsim13G0001100 Rhododendron simsii HOM05D006460 ORTHO05D008143 2.8e-154 549.3 415 67.7
Lsat_1_v5_gn_8_167341 Lactuca sativa HOM05D006460 ORTHO05D008143 3.7e-154 548.9 441 60.5
PSO357G0369 Papaver somniferum HOM05D006460 ORTHO05D008143 1.1e-153 547.4 453 61.6
FAN19G0891 Fragaria x ananassa HOM05D006460 ORTHO05D008143 1.4e-153 547.0 478 59.2
Aa31LG5G1480 Aethionema arabicum HOM05D006460 ORTHO05D008143 5.9e-152 541.6 491 57.4
Cfa004883 Carpinus fangiana HOM05D006460 ORTHO05D008143 5.9e-152 541.6 403 66.7
ATR0796G118 Amborella trichopoda HOM05D006460 ORTHO05D008143 5.5e-150 535.0 489 54.8
CDE08G1018 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 2.4e-145 519.6 476 55.0
ECA236G0789 Erigeron canadensis HOM05D004810 ORTHO05D006272 2.1e-141 506.5 409 59.4
Nitab4.5_0002994g0020 Nicotiana tabacum HOM05D006460 ORTHO05D008143 2.0e-136 490.0 476 54.0
Ah.11g045760 Amaranthus hybridus HOM05D006460 ORTHO05D008143 1.1e-134 484.2 450 57.3
MELO3C023610.2 Cucumis melo HOM05D006460 ORTHO05D008143 1.9e-134 483.4 434 55.5
CSS0008981 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 2.7e-133 479.6 355 68.2
HPP92_010877 Vanilla planifolia HOM05D000746 ORTHO05D000573 2.7e-133 479.6 447 52.3
Eucgr.L00887 Eucalyptus grandis HOM05D006460 ORTHO05D008143 7.5e-131 471.5 350 67.7
PSO170G6216 Papaver somniferum HOM05D006460 ORTHO05D008143 3.7e-130 469.2 397 61.2
PSO384G3244 Papaver somniferum HOM05D006460 ORTHO05D008143 8.2e-130 468.0 374 62.8
Dinv33158 Davidia involucrata HOM05D001974 ORTHO05D001995 2.9e-127 459.5 340 67.1
CsaV3_7G030430 Cucumis sativus L. HOM05D006460 ORTHO05D008143 8.0e-125 451.4 360 64.7
Zm00001eb211340 Zea mays HOM05D006460 ORTHO05D008143 2.0e-120 436.8 373 57.1
AagrBONN_evm.TU.Sc2ySwM_228.322 Anthoceros agrestis HOM05D006460 ORTHO05D008143 1.3e-106 391.0 453 44.8
Mapoly0095s0050 Marchantia polymorpha HOM05D006460 ORTHO05D008143 1.4e-105 387.5 487 41.3
Pp3c21_16200 Physcomitrium patens HOM05D006460 ORTHO05D008143 3.5e-104 382.9 516 39.7
AagrBONN_evm.TU.Sc2ySwM_344.3324 Anthoceros agrestis HOM05D006460 ORTHO05D008143 6.6e-103 378.6 451 43.7
Peaxi162Scf00919g00047 Petunia axillaris HOM05D006460 ORTHO05D008143 1.2e-101 374.4 352 56.2
Sopen01g029980 Solanum pennellii HOM05D006460 ORTHO05D008143 3.1e-100 369.8 288 63.2
SMO010G0007 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 2.7e-96 356.7 455 40.2
MBI18_g28900_MAGBIO Magnolia biondii HOM05D006460 ORTHO05D008143 2.0e-83 313.9 435 39.8
unitig_578.g16638 Utricularia gibba HOM05D006460 ORTHO05D008143 1.1e-81 308.1 444 39.9
Os03g0833200 Oryza sativa ssp. japonica HOM05D006460 ORTHO05D008143 6.7e-63 245.7 240 50.8
MCO13G012 Micromonas commoda HOM05D006460 ORTHO05D008143 1.2e-56 224.9 473 33.0
PRCOL_00001885 Prasinoderma coloniale HOM05D006460 ORTHO05D008143 3.3e-46 190.3 482 29.5
SEGI_40178 Sequoiadendron giganteum HOM05D006460 ORTHO05D008143 1.4e-44 184.9 281 38.4
MD17G1281000 Malus domestica HOM05D006460 ORTHO05D008143 3.1e-44 183.7 236 44.1
AUR62029044 Chenopodium quinoa HOM05D006460 ORTHO05D008143 5.3e-44 183.0 154 63.0
AUR62036055 Chenopodium quinoa HOM05D006460 ORTHO05D008143 3.4e-43 180.3 154 61.7
SMO339G0034 Selaginella moellendorffii HOM05D006460 ORTHO05D008143 2.5e-41 174.1 227 40.1
AagrBONN_evm.TU.Sc2ySwM_228.45 Anthoceros agrestis HOM05D006460 ORTHO05D008143 7.4e-22 109.4 217 35.5
CBR_g49426 Chara braunii HOM05D006460 ORTHO05D008143 3.7e-21 107.1 91 52.7
QL04p085746 Quercus lobata HOM05D006460 ORTHO05D008143 6.3e-21 106.3 108 50.9
Hund09679 Selenicereus undatus HOM05D006460 ORTHO05D008143 3.8e-18 97.1 143 40.6
AUR62007801 Chenopodium quinoa HOM05D006460 ORTHO05D008143 2.5e-17 94.4 78 64.1
RcHm_v2.0_Chr7g0232271 Rosa chinensis HOM05D006460 ORTHO05D008143 1.6e-16 91.7 79 64.6
Cre16.g654992 Chlamydomonas reinhardtii HOM05D006460 ORTHO05D008143 1.5e-14 85.1 264 26.5
QL05p033637 Quercus lobata HOM05D000101 ORTHO05D000089 6.5e-10 69.7 68 51.5
AUR62043166 Chenopodium quinoa HOM05D006460 ORTHO05D008143 1.9e-09 68.2 63 61.9
CDE02G3709 Ceratophyllum demersum HOM05D006460 ORTHO05D008143 4.0e-07 60.5 46 63.0
CSS0016884 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.5e-06 58.5 65 46.2
CSS0037496 Camellia sinensis var. sinensis HOM05D006460 ORTHO05D008143 1.5e-06 58.5 65 46.2
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 9.8e-06 55.8 75 41.3


User provided reference genes

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