Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0011670 Simmondsia chinensis HOM05D006389 ORTHO05D007863 4.6e-241 837.4 406 100.0
AUR62019259 Chenopodium quinoa HOM05D006389 ORTHO05D007863 2.3e-179 632.5 407 75.2
Hund22074 Selenicereus undatus HOM05D006389 ORTHO05D007863 6.0e-172 607.8 393 72.5
TAR623G0704 Trochodendron aralioides HOM05D006389 ORTHO05D007863 2.2e-158 562.8 391 67.5
CiPaw.14G122900 Carya illinoinensis HOM05D006389 ORTHO05D007863 5.4e-157 558.1 387 68.5
Manes.06G168100 Manihot esculenta HOM05D006389 ORTHO05D007863 2.3e-155 552.7 397 66.0
Cfa005620 Carpinus fangiana HOM05D006389 ORTHO05D007863 1.5e-154 550.1 394 66.8
QL01p005900 Quercus lobata HOM05D006389 ORTHO05D007863 1.4e-152 543.5 387 66.9
PSO339G5502 Papaver somniferum HOM05D006389 ORTHO05D007863 1.7e-150 536.6 387 66.1
GSVIVG01025317001 Vitis vinifera HOM05D006389 ORTHO05D007863 1.2e-148 530.4 388 66.8
AUR62000087 Chenopodium quinoa HOM05D006389 ORTHO05D007863 4.6e-148 528.5 396 65.9
DCAR_023759 Daucus carota HOM05D006389 ORTHO05D007863 3.9e-147 525.4 392 62.0
Atru.chr3.2543 Acer truncatum HOM05D006389 ORTHO05D007863 5.1e-147 525.0 394 64.5
COL.COLO4_24825 Corchorus olitorius HOM05D006389 ORTHO05D007863 4.7e-145 518.5 386 65.0
Prupe.6G021400 Prunus persica HOM05D006389 ORTHO05D007863 4.7e-145 518.5 394 63.2
Potri.001G016800 Populus trichocarpa HOM05D006389 ORTHO05D007863 1.2e-143 513.8 395 62.5
TWI34G0575 Tripterygium wilfordii HOM05D006389 ORTHO05D007863 9.9e-143 510.8 399 61.4
arahy.Tifrunner.gnm1.ann1.VM78M6 Arachis hypogaea HOM05D006389 ORTHO05D007863 6.4e-142 508.1 385 63.4
Ah.02g115890 Amaranthus hybridus HOM05D006389 ORTHO05D007863 8.4e-142 507.7 383 63.2
RcHm_v2.0_Chr5g0077431 Rosa chinensis HOM05D006389 ORTHO05D007863 3.2e-141 505.8 384 63.3
arahy.Tifrunner.gnm1.ann1.XMKE9J Arachis hypogaea HOM05D006389 ORTHO05D007863 5.4e-141 505.0 385 63.4
Glyma.11G130800 Glycine max HOM05D006389 ORTHO05D007863 1.2e-140 503.8 390 61.3
MD11G1027100 Malus domestica HOM05D006389 ORTHO05D007863 1.2e-140 503.8 394 60.9
Gorai.006G129600 Gossypium raimondii HOM05D006389 ORTHO05D007863 4.6e-140 501.9 389 62.0
Gohir.D09G111800 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.7e-139 500.0 389 62.0
Oeu014062.1 Olea europaea HOM05D006389 ORTHO05D007863 3.0e-139 499.2 392 60.5
Gohir.A09G115200 Gossypium hirsutum HOM05D006389 ORTHO05D007863 1.1e-138 497.3 387 61.5
Nn7g36087 Nelumbo nucifera HOM05D006389 ORTHO05D007863 1.5e-138 496.9 386 62.2
Aqoxy1G00204 Aquilegia oxysepala HOM05D006389 ORTHO05D007863 3.3e-138 495.7 391 61.4
FvH4_3g43320 Fragaria vesca HOM05D006389 ORTHO05D007863 3.3e-138 495.7 388 62.1
FAN11G1995 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.3e-138 495.7 388 62.1
Cc01_g04330 Coffea canephora HOM05D006389 ORTHO05D007863 4.3e-138 495.4 405 59.5
Sopen11g021140 Solanum pennellii HOM05D006389 ORTHO05D007863 2.8e-137 492.7 385 60.8
Sed0000566 Sechium edule HOM05D006389 ORTHO05D007863 6.2e-137 491.5 389 59.9
CAN.G409.1 Capsicum annuum HOM05D006389 ORTHO05D007863 9.0e-136 487.6 398 60.3
Lalb_Chr03g0026221 Lupinus albus HOM05D006389 ORTHO05D007863 1.5e-135 486.9 391 60.9
vmacro04176 Vaccinium macrocarpon HOM05D006389 ORTHO05D007863 3.8e-134 482.3 386 62.2
Actinidia16300 Actinidia chinensis HOM05D006389 ORTHO05D007863 1.4e-133 480.3 403 59.8
Migut.N02297 Erythranthe guttata HOM05D006389 ORTHO05D007863 2.4e-133 479.6 383 58.0
ClCG03G013410 Citrullus lanatus HOM05D006389 ORTHO05D007863 7.1e-133 478.0 391 57.8
Cpa.g.sc84.94 Carica papaya HOM05D006389 ORTHO05D007863 2.1e-132 476.5 359 62.1
Nitab4.5_0003250g0030 Nicotiana tabacum HOM05D006389 ORTHO05D007863 2.7e-132 476.1 365 63.0
FAN16G0020 Fragaria x ananassa HOM05D006389 ORTHO05D007863 3.5e-132 475.7 376 62.0
CsaV3_1G042620 Cucumis sativus L. HOM05D006389 ORTHO05D007863 7.9e-132 474.6 389 57.8
AUR62043581 Chenopodium quinoa HOM05D006389 ORTHO05D007863 1.3e-131 473.8 398 61.1
Lsat_1_v5_gn_2_101040 Lactuca sativa HOM05D006389 ORTHO05D007863 5.1e-131 471.9 394 60.2
SalBow4G3167 Salvia bowleyana HOM05D006389 ORTHO05D007863 1.1e-130 470.7 431 53.8
Phvul.011G057100 Phaseolus vulgaris HOM05D006389 ORTHO05D007863 9.0e-128 461.1 390 57.4
HanXRQChr13g0407081 Helianthus annuus HOM05D006389 ORTHO05D007863 2.6e-127 459.5 384 59.1
PGR102G3332 Punica granatum HOM05D006389 ORTHO05D007863 4.5e-127 458.8 379 58.6
VMungo1127G1170 Vigna mungo HOM05D006389 ORTHO05D007863 1.1e-125 454.1 444 51.6
THA.LOC104799096 Tarenaya hassleriana HOM05D006389 ORTHO05D007863 5.1e-123 445.3 396 53.3
HanXRQChr14g0453091 Helianthus annuus HOM05D006389 ORTHO05D007863 6.7e-123 444.9 411 55.2
Sabra01G0011800 Salix brachista HOM05D006389 ORTHO05D007863 2.5e-122 443.0 441 52.4
ECA238G3473 Erigeron canadensis HOM05D006389 ORTHO05D007863 7.4e-122 441.4 388 56.4
FAN25G0313 Fragaria x ananassa HOM05D006389 ORTHO05D007863 1.6e-121 440.3 370 59.7
Dinv36295 Davidia involucrata HOM05D006389 ORTHO05D007863 4.8e-121 438.7 297 70.4
FAN21G1265 Fragaria x ananassa HOM05D002542 ORTHO05D005078 1.5e-119 433.7 374 58.6
COL.COLO4_26371 Corchorus olitorius HOM05D006389 ORTHO05D007863 2.6e-119 433.0 438 53.2
Medtr4g066000 Medicago truncatula HOM05D006389 ORTHO05D007863 5.8e-119 431.8 390 54.9
AT5G12920 Arabidopsis thaliana HOM05D006389 ORTHO05D007863 3.8e-118 429.1 380 55.3
HanXRQChr13g0407091 Helianthus annuus HOM05D006389 ORTHO05D007863 6.5e-118 428.3 385 56.4
Psat0s3083g0200 Pisum sativum HOM05D006389 ORTHO05D007863 3.2e-117 426.0 390 52.8
Carub.0006s1110 Capsella rubella HOM05D006389 ORTHO05D007863 7.1e-117 424.9 387 53.2
AL6G23480 Arabidopsis lyrata HOM05D006389 ORTHO05D007863 6.0e-116 421.8 389 53.2
A03p05690 Brassica napus HOM05D006389 ORTHO05D007863 6.0e-116 421.8 381 53.8
C03p06650 Brassica napus HOM05D006389 ORTHO05D007863 6.0e-116 421.8 381 53.8
Lj3g0001596 Lotus japonicus HOM05D006389 ORTHO05D007863 7.9e-116 421.4 389 54.5
SalBow4G2322 Salvia bowleyana HOM05D006389 ORTHO05D007863 6.7e-115 418.3 431 50.1
CARHR200530 Cardamine hirsuta HOM05D006389 ORTHO05D007863 1.5e-114 417.2 396 51.5
Thecc.09G225900 Theobroma cacao HOM05D006389 ORTHO05D007863 1.9e-114 416.8 301 65.4
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 3.3e-114 416.0 384 52.9
Rhsim13G0224700 Rhododendron simsii HOM05D006389 ORTHO05D007863 4.3e-114 415.6 423 53.7
Sp6g31040 Schrenkiella parvula HOM05D006389 ORTHO05D007863 6.3e-113 411.8 389 51.9
Haze_10646 Corylus avellana HOM05D006389 ORTHO05D007863 1.4e-112 410.6 514 46.5
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.7e-110 403.7 386 50.8
Thhalv10015483m.g Eutrema salsugineum HOM05D006389 ORTHO05D007863 2.2e-110 403.3 386 51.8
CDE06G1860 Ceratophyllum demersum HOM05D006389 ORTHO05D007863 8.5e-110 401.4 335 57.0
unitig_699.g19125 Utricularia gibba HOM05D006389 ORTHO05D007863 1.1e-109 401.0 329 56.5
SGA_v2.0_scaffold3G01545 Striga asiatica HOM05D006389 ORTHO05D007863 1.2e-108 397.5 392 52.8
BolC3t13171H Brassica oleracea HOM05D006389 ORTHO05D007863 1.6e-108 397.1 421 48.5
BraA03t09908Z Brassica rapa HOM05D006389 ORTHO05D007863 7.9e-108 394.8 428 47.9
MELO3C015208.2 Cucumis melo HOM05D006389 ORTHO05D007863 1.8e-104 383.6 312 57.7
TPR.G13666 Trifolium pratense HOM05D006389 ORTHO05D007863 3.4e-103 379.4 396 49.5
Zm00001eb245730 Zea mays HOM05D006389 ORTHO05D007863 6.5e-102 375.2 392 50.3
HanXRQChr14g0455041 Helianthus annuus HOM05D006389 ORTHO05D007863 1.1e-101 374.4 314 58.6
ATR0605G326 Amborella trichopoda HOM05D006389 ORTHO05D007863 3.6e-100 369.4 391 49.6
Hma1.2p1_0728F.1_g209350 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 2.4e-96 356.7 258 66.7
HPP92_018945 Vanilla planifolia HOM05D006389 ORTHO05D007863 1.6e-92 344.0 315 54.9
Os02g0591600 Oryza sativa ssp. japonica HOM05D006389 ORTHO05D007863 1.1e-88 331.3 388 45.1
Eucgr.B03666 Eucalyptus grandis HOM05D006389 ORTHO05D007863 1.8e-83 313.9 290 53.1
Pp3c6_27180 Physcomitrium patens HOM05D006389 ORTHO05D007863 2.6e-82 310.1 375 40.0
PSO384G2577 Papaver somniferum HOM05D006389 ORTHO05D007863 2.2e-78 297.0 209 65.6
Ca_20580_v3 Cicer arietinum L. HOM05D006389 ORTHO05D007863 5.2e-75 285.8 267 56.6
Nitab4.5_0000175g0150 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.3e-73 281.2 199 66.3
Solyc11g045510.3 Solanum lycopersicum HOM05D006389 ORTHO05D007863 6.3e-73 278.9 199 66.8
Mapoly0014s0037 Marchantia polymorpha HOM05D006389 ORTHO05D007863 1.6e-71 274.2 398 38.4
Peaxi162Scf00559g00114 Petunia axillaris HOM05D006389 ORTHO05D007863 5.5e-69 265.8 189 65.1
CSS0004435 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 9.8e-66 255.0 216 60.6
MSTRG.17573 Avicennia marina HOM05D006389 ORTHO05D007863 4.9e-65 252.7 206 60.2
MBI01_g14331_MAGBIO Magnolia biondii HOM05D006389 ORTHO05D007863 1.7e-62 244.2 156 70.5
AagrBONN_evm.TU.Sc2ySwM_228.3166 Anthoceros agrestis HOM05D006389 ORTHO05D007863 6.1e-60 235.7 389 35.7
SHI30505 Sapria himalayana HOM05D006389 ORTHO05D007863 7.5e-58 228.8 184 59.8
Ciclev10018279m.g Citrus clementina HOM05D006389 ORTHO05D007863 3.1e-51 206.8 168 60.7
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.6e-39 167.9 346 32.9
Ciclev10016567m.g Citrus clementina HOM05D006389 ORTHO05D007863 3.3e-37 160.2 141 54.6
Hma1.2p1_0728F.1_g209340 Hydrangea macrophylla HOM05D006389 ORTHO05D007863 6.8e-35 152.5 108 67.6
HanXRQChr14g0450961 Helianthus annuus HOM05D006389 ORTHO05D007863 6.6e-30 136.0 190 40.5
Nitab4.5_0000175g0160 Nicotiana tabacum HOM05D006389 ORTHO05D007863 1.6e-28 131.3 130 50.0
Peaxi162Scf00185g00310 Petunia axillaris HOM05D006389 ORTHO05D007863 9.3e-24 115.5 128 48.4
CSS0015492 Camellia sinensis var. sinensis HOM05D006389 ORTHO05D007863 2.3e-22 110.9 85 62.4
MCO05G648 Micromonas commoda HOM05D006389 ORTHO05D007863 7.3e-21 105.9 359 27.3
Lj1A361T11 Lonicera japonica HOM05D006389 ORTHO05D007863 9.6e-21 105.5 73 67.1
SHI30507 Sapria himalayana HOM05D006389 ORTHO05D007863 1.1e-19 102.1 91 57.1
Psat4g014880 Pisum sativum HOM05D006389 ORTHO05D007863 3.5e-15 87.0 149 34.9
arahy.Tifrunner.gnm1.ann1.RII35Q Arachis hypogaea HOM05D006389 ORTHO05D007863 5.1e-14 83.2 279 26.2
HanXRQChr13g0389161 Helianthus annuus HOM05D006389 ORTHO05D007863 3.4e-10 70.5 53 60.4
SEGI_11371 Sequoiadendron giganteum HOM05D006389 ORTHO05D007863 6.5e-09 66.2 87 39.1
QL01p005881 Quercus lobata HOM05D006389 ORTHO05D007863 1.0e-06 58.9 79 40.5
Peaxi162Scf00559g00110 Petunia axillaris HOM05D006389 ORTHO05D007863 5.1e-06 56.6 48 47.9


User provided reference genes

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