Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0009950 Simmondsia chinensis HOM05D004012 ORTHO05D004752 9.3e-248 859.8 433 100.0
AUR62000581 Chenopodium quinoa HOM05D004012 ORTHO05D004752 1.9e-208 729.2 433 83.4
AUR62006937 Chenopodium quinoa HOM05D004012 ORTHO05D004752 4.7e-207 724.5 433 82.9
Hund07194 Selenicereus undatus HOM05D004012 ORTHO05D004752 5.1e-206 721.1 433 82.4
Dinv19127 Davidia involucrata HOM05D004012 ORTHO05D004752 7.2e-200 700.7 436 80.7
Hma1.2p1_3052F.1_g332140 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 1.0e-193 680.2 434 77.6
Dinv26833 Davidia involucrata HOM05D004012 ORTHO05D004752 2.2e-193 679.1 440 77.5
Hma1.2p1_0513F.1_g169610 Hydrangea macrophylla HOM05D004012 ORTHO05D004752 8.5e-193 677.2 434 77.4
EL10Ac4g09708 Beta vulgaris HOM05D004012 ORTHO05D004752 4.0e-190 668.3 434 77.6
Nn5g27391 Nelumbo nucifera HOM05D004012 ORTHO05D004752 2.0e-189 666.0 434 76.0
CSS0025733 Camellia sinensis var. sinensis HOM05D004012 ORTHO05D004752 4.1e-187 658.3 434 75.8
TAR628G1247 Trochodendron aralioides HOM05D004012 ORTHO05D004752 9.1e-187 657.1 464 71.6
Aqoxy5G01862 Aquilegia oxysepala HOM05D004012 ORTHO05D004752 4.2e-184 648.3 434 73.5
Manes.13G154600 Manihot esculenta HOM05D004012 ORTHO05D004752 1.6e-183 646.4 432 73.4
CiPaw.15G186100 Carya illinoinensis HOM05D004012 ORTHO05D004752 3.0e-182 642.1 431 73.1
Rhsim01G0147700 Rhododendron simsii HOM05D004012 ORTHO05D004752 4.0e-182 641.7 462 72.3
ECA238G2948 Erigeron canadensis HOM05D004012 ORTHO05D004752 1.5e-181 639.8 436 72.7
GSVIVG01000257001 Vitis vinifera HOM05D004012 ORTHO05D004752 1.5e-181 639.8 408 77.2
Prupe.5G058000 Prunus persica HOM05D004012 ORTHO05D004752 3.7e-180 635.2 435 73.3
Lj6g0017875 Lotus japonicus HOM05D004012 ORTHO05D004752 9.1e-179 630.6 432 72.0
FvH4_5g20280 Fragaria vesca HOM05D004012 ORTHO05D004752 3.5e-178 628.6 435 72.0
SalBow1G0131 Salvia bowleyana HOM05D004012 ORTHO05D004752 5.9e-178 627.9 436 72.0
FAN18G2241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.0e-177 627.1 435 71.7
FAN08G1522 Fragaria x ananassa HOM05D004012 ORTHO05D004752 2.3e-177 625.9 435 71.7
RcHm_v2.0_Chr7g0205341 Rosa chinensis HOM05D004012 ORTHO05D004752 5.0e-177 624.8 435 71.3
VMungo0720G3057 Vigna mungo HOM05D004012 ORTHO05D004752 1.1e-176 623.6 432 71.1
Atru.chr3.1437 Acer truncatum HOM05D004012 ORTHO05D004752 1.5e-176 623.2 431 71.7
Phvul.007G277800 Phaseolus vulgaris HOM05D004012 ORTHO05D004752 1.9e-176 622.9 432 71.5
Potri.017G122600 Populus trichocarpa HOM05D004012 ORTHO05D004752 1.9e-176 622.9 432 71.8
MBI10_g20270_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 3.3e-176 622.1 434 70.5
MELO3C023211.2 Cucumis melo HOM05D004012 ORTHO05D004752 5.5e-176 621.3 433 71.8
HanXRQChr13g0402671 Helianthus annuus HOM05D004012 ORTHO05D004752 5.5e-176 621.3 435 71.0
Glyma.02G005000 Glycine max HOM05D004012 ORTHO05D004752 7.2e-176 620.9 432 71.3
MSTRG.9397 Avicennia marina HOM05D004012 ORTHO05D004752 9.5e-176 620.5 436 70.2
FAN04G0350 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.6e-175 619.8 435 70.8
MD04G1052500 Malus domestica HOM05D004012 ORTHO05D004752 2.1e-175 619.4 435 71.7
Sopen04g017040 Solanum pennellii HOM05D004012 ORTHO05D004752 3.6e-175 618.6 434 72.1
Lalb_Chr03g0037441 Lupinus albus HOM05D004012 ORTHO05D004752 1.0e-174 617.1 432 71.3
CsaV3_2G019600 Cucumis sativus L. HOM05D004012 ORTHO05D004752 2.3e-174 615.9 433 71.6
Gohir.D10G106700 Gossypium hirsutum HOM05D004012 ORTHO05D004752 4.0e-174 615.1 435 71.5
Gorai.011G116800 Gossypium raimondii HOM05D004012 ORTHO05D004752 4.0e-174 615.1 435 71.5
Oeu034405.1 Olea europaea HOM05D004012 ORTHO05D004752 4.0e-174 615.1 444 69.8
Gohir.A10G084900 Gossypium hirsutum HOM05D004012 ORTHO05D004752 8.9e-174 614.0 435 71.5
Lalb_Chr01g0020921 Lupinus albus HOM05D004012 ORTHO05D004752 1.5e-173 613.2 432 70.1
CAN.G10.8 Capsicum annuum HOM05D004012 ORTHO05D004752 2.0e-173 612.8 434 71.9
Migut.D01135 Erythranthe guttata HOM05D004012 ORTHO05D004752 5.7e-173 611.3 436 68.3
MD06G1047700 Malus domestica HOM05D004012 ORTHO05D004752 5.7e-173 611.3 435 71.0
ClCG02G000230 Citrullus lanatus HOM05D004012 ORTHO05D004752 2.2e-172 609.4 445 69.9
Lalb_Chr19g0127941 Lupinus albus HOM05D004012 ORTHO05D004752 2.4e-171 605.9 432 69.9
CANSAT54G0087 Cannabis sativa HOM05D004012 ORTHO05D004752 5.4e-171 604.7 436 68.1
CDE05G2224 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 1.2e-170 603.6 432 69.4
MSTRG.4671 Avicennia marina HOM05D004012 ORTHO05D004752 1.6e-170 603.2 436 68.3
Ca_12160_v3 Cicer arietinum L. HOM05D004012 ORTHO05D004752 4.5e-170 601.7 432 68.3
TWI31G0701 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 2.5e-168 595.9 432 69.7
Eucgr.I00032 Eucalyptus grandis HOM05D004012 ORTHO05D004752 1.2e-167 593.6 428 68.5
Cc07_g20580 Coffea canephora HOM05D004012 ORTHO05D004752 2.3e-166 589.3 389 75.8
Sed0016932 Sechium edule HOM05D004012 ORTHO05D004752 6.8e-166 587.8 435 69.0
Psat6g104000 Pisum sativum HOM05D004012 ORTHO05D004752 3.4e-165 585.5 452 65.9
arahy.Tifrunner.gnm1.ann1.5Q2P9B Arachis hypogaea HOM05D004012 ORTHO05D004752 7.5e-165 584.3 432 69.2
arahy.Tifrunner.gnm1.ann1.EZQ64B Arachis hypogaea HOM05D004012 ORTHO05D004752 7.5e-165 584.3 432 69.2
Medtr1g041405 Medicago truncatula HOM05D004012 ORTHO05D004752 1.3e-164 583.6 451 65.4
PGR119G2008 Punica granatum HOM05D004012 ORTHO05D004752 1.3e-164 583.6 432 65.7
Cc07_g20480 Coffea canephora HOM05D004012 ORTHO05D004752 1.4e-163 580.1 389 74.8
Lsat_1_v5_gn_0_9061 Lactuca sativa HOM05D004012 ORTHO05D004752 3.9e-161 572.0 435 67.4
DCAR_009624 Daucus carota HOM05D004012 ORTHO05D004752 5.0e-161 571.6 437 67.5
Glyma.10G003500 Glycine max HOM05D004012 ORTHO05D004752 6.6e-161 571.2 399 69.7
TPR.G25177 Trifolium pratense HOM05D004012 ORTHO05D004752 3.6e-159 565.5 446 64.6
unitig_0.g354 Utricularia gibba HOM05D004012 ORTHO05D004752 3.6e-159 565.5 435 64.4
vmacro21003 Vaccinium macrocarpon HOM05D004012 ORTHO05D004752 6.8e-158 561.2 416 70.9
Aa31LG11G11210 Aethionema arabicum HOM05D004012 ORTHO05D004752 2.2e-156 556.2 455 60.2
Thhalv10013606m.g Eutrema salsugineum HOM05D004012 ORTHO05D004752 1.1e-155 553.9 431 62.2
ATR1089G159 Amborella trichopoda HOM05D004012 ORTHO05D004752 7.0e-155 551.2 438 64.4
CDE05G3168 Ceratophyllum demersum HOM05D004012 ORTHO05D004752 2.1e-154 549.7 438 65.8
Sp6g25900 Schrenkiella parvula HOM05D004012 ORTHO05D004752 1.7e-153 546.6 434 61.5
Duzib147G1077 Durio zibethinus HOM05D004012 ORTHO05D004752 2.3e-153 546.2 357 77.3
Actinidia30855 Actinidia chinensis HOM05D004012 ORTHO05D004752 1.1e-152 543.9 435 67.1
Carub.0006s1668 Capsella rubella HOM05D004012 ORTHO05D004752 1.5e-152 543.5 435 61.8
PSO210G3799 Papaver somniferum HOM05D004012 ORTHO05D004752 9.5e-152 540.8 434 63.6
TAR376G0099 Trochodendron aralioides HOM05D004012 ORTHO05D004752 2.8e-151 539.3 382 71.7
PSO761G0211 Papaver somniferum HOM05D004012 ORTHO05D004752 3.6e-151 538.9 434 63.6
Potri.004G092400 Populus trichocarpa HOM05D004012 ORTHO05D004752 3.6e-151 538.9 402 67.4
Sabra04G0062100 Salix brachista HOM05D004012 ORTHO05D004752 5.2e-150 535.0 442 62.2
Lsat_1_v5_gn_5_118080 Lactuca sativa HOM05D004012 ORTHO05D004752 6.8e-150 534.6 438 64.8
TWI79G0644 Tripterygium wilfordii HOM05D004012 ORTHO05D004752 1.3e-148 530.4 432 64.8
CARHR194600 Cardamine hirsuta HOM05D004012 ORTHO05D004752 4.9e-148 528.5 438 60.7
AT5G18420 Arabidopsis thaliana HOM05D004012 ORTHO05D004752 1.4e-147 526.9 433 59.4
BcaB08g36680 Brassica carinata HOM05D004012 ORTHO05D004752 1.9e-147 526.6 433 59.6
C09p58260 Brassica napus HOM05D004012 ORTHO05D004752 1.9e-147 526.6 447 58.8
MBI06_g32154_MAGBIO Magnolia biondii HOM05D004012 ORTHO05D004752 1.9e-147 526.6 420 61.9
A10p21150 Brassica napus HOM05D004012 ORTHO05D004752 3.5e-146 522.3 453 57.6
BolC9t58691H Brassica oleracea HOM05D004012 ORTHO05D004752 3.5e-146 522.3 449 57.7
BraA10t44178Z Brassica rapa HOM05D004012 ORTHO05D004752 4.6e-146 521.9 454 57.5
SGA_v2.0_scaffold14G07064 Striga asiatica HOM05D004012 ORTHO05D004752 3.0e-145 519.2 436 61.9
Eucgr.I00085 Eucalyptus grandis HOM05D004012 ORTHO05D004752 5.1e-145 518.5 381 66.4
Mapoly0005s0018 Marchantia polymorpha HOM05D004012 ORTHO05D004752 5.6e-144 515.0 434 61.3
THA.LOC104806688 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 1.6e-143 513.5 429 59.4
BraA03t10211Z Brassica rapa HOM05D004012 ORTHO05D004752 2.8e-143 512.7 455 57.4
Actinidia14359 Actinidia chinensis HOM05D004012 ORTHO05D004752 6.2e-143 511.5 466 61.2
HPP92_005635 Vanilla planifolia HOM05D004012 ORTHO05D004752 1.8e-142 510.0 351 72.6
BolC3t13514H Brassica oleracea HOM05D004012 ORTHO05D004752 4.0e-142 508.8 455 56.9
Duzib187G0370 Durio zibethinus HOM05D004012 ORTHO05D004752 8.9e-142 507.7 363 72.2
AL6G29670 Arabidopsis lyrata HOM05D004012 ORTHO05D004752 1.5e-141 506.9 383 65.0
Ciclev10005092m.g Citrus clementina HOM05D004012 ORTHO05D004752 3.4e-141 505.8 393 64.4
Actinidia12239 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.9e-140 501.9 307 80.1
Duzib264G1318 Durio zibethinus HOM05D004012 ORTHO05D004752 1.1e-139 500.7 388 67.8
Thecc.01G145600 Theobroma cacao HOM05D004012 ORTHO05D004752 2.4e-139 499.6 378 67.5
Sabra17G0101400 Salix brachista HOM05D004012 ORTHO05D004752 3.2e-139 499.2 394 65.0
Sabra17G0104000 Salix brachista HOM05D004012 ORTHO05D004752 1.2e-138 497.3 394 64.7
Ah.02g118090 Amaranthus hybridus HOM05D004012 ORTHO05D004752 3.9e-137 492.3 385 65.2
Pp3c20_12330 Physcomitrium patens HOM05D004012 ORTHO05D004752 1.1e-136 490.7 432 59.0
Os11g0240900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 1.8e-134 483.4 426 59.2
Pp3c24_6950 Physcomitrium patens HOM05D004012 ORTHO05D004752 6.4e-132 474.9 432 56.9
Lj4A823T24 Lonicera japonica HOM05D004012 ORTHO05D004752 5.4e-131 471.9 299 78.3
CBR_g22449 Chara braunii HOM05D004012 ORTHO05D004752 1.6e-130 470.3 436 57.8
C03p10330 Brassica napus HOM05D004012 ORTHO05D004752 1.4e-126 457.2 424 54.7
Zm00001eb167940 Zea mays HOM05D004012 ORTHO05D004752 4.9e-124 448.7 430 57.0
Zm00001eb112220 Zea mays HOM05D004012 ORTHO05D004752 3.2e-123 446.0 436 55.5
Pp3c23_1780 Physcomitrium patens HOM05D004012 ORTHO05D004752 3.5e-122 442.6 352 64.5
FAN13G1241 Fragaria x ananassa HOM05D004012 ORTHO05D004752 1.6e-119 433.7 331 64.0
DCAR_019944 Daucus carota HOM05D004012 ORTHO05D004752 3.3e-104 382.9 322 63.0
SMO196G0070 Selaginella moellendorffii HOM05D004012 ORTHO05D004752 1.2e-101 374.4 280 67.9
Nitab4.5_0000064g0090 Nicotiana tabacum HOM05D004012 ORTHO05D004752 2.8e-95 353.2 279 62.0
Peaxi162Scf00621g00412 Petunia axillaris HOM05D004012 ORTHO05D004752 2.4e-94 350.1 279 60.9
BcaC04g18693 Brassica carinata HOM05D004012 ORTHO05D004752 5.0e-92 342.4 437 47.1
PGSC0003DMG401004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 8.5e-92 341.7 279 61.6
Solyc04g024500.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 1.2e-90 337.8 279 60.6
Cc07_g20540 Coffea canephora HOM05D004012 ORTHO05D004752 7.9e-90 335.1 350 51.1
Oeu036288.1 Olea europaea HOM05D004012 ORTHO05D004752 7.9e-90 335.1 293 57.3
AagrBONN_evm.TU.Sc2ySwM_228.2915 Anthoceros agrestis HOM05D004012 ORTHO05D004752 1.0e-89 334.7 326 51.5
Cpa.g.sc138.55 Carica papaya HOM05D004012 ORTHO05D004752 1.1e-86 324.7 230 66.1
Nitab4.5_0005261g0010 Nicotiana tabacum HOM05D004012 ORTHO05D004752 7.0e-86 322.0 279 58.8
Ah.06g188310 Amaranthus hybridus HOM05D004012 ORTHO05D004752 7.4e-80 302.0 214 68.2
Lju41A56G29 Lonicera japonica HOM05D004012 ORTHO05D004752 2.0e-77 293.9 366 44.5
Solyc04g024510.3 Solanum lycopersicum HOM05D004012 ORTHO05D004752 3.2e-75 286.6 157 92.4
Nitab4.5_0000064g0100 Nicotiana tabacum HOM05D004012 ORTHO05D004752 5.5e-75 285.8 177 82.5
Nitab4.5_0005261g0020 Nicotiana tabacum HOM05D004012 ORTHO05D004752 1.2e-74 284.6 156 91.7
Peaxi162Scf00621g00413 Petunia axillaris HOM05D004012 ORTHO05D004752 1.4e-73 281.2 155 91.6
Haze_19373 Corylus avellana HOM05D004012 ORTHO05D004752 7.5e-72 275.4 157 89.2
SEGI_14103 Sequoiadendron giganteum HOM05D004012 ORTHO05D004752 1.7e-71 274.2 156 88.5
HPP92_005645 Vanilla planifolia HOM05D004012 ORTHO05D004752 7.7e-69 265.4 145 93.1
QL10p034897 Quercus lobata HOM05D004012 ORTHO05D004752 5.5e-67 259.2 166 71.1
Zm00001eb138450 Zea mays HOM05D004012 ORTHO05D004752 1.8e-65 254.2 275 48.4
Cre17.g726800 Chlamydomonas reinhardtii HOM05D004012 ORTHO05D004752 4.0e-65 253.1 509 37.7
Os12g0197900 Oryza sativa ssp. japonica HOM05D004012 ORTHO05D004752 9.1e-62 241.9 141 85.8
PGSC0003DMG402004242 Solanum tuberosum HOM05D004012 ORTHO05D004752 5.9e-61 239.2 133 91.7
THA.LOC104799828 Tarenaya hassleriana HOM05D004012 ORTHO05D004752 3.0e-57 226.9 184 65.2
Lsat_1_v5_gn_2_19540 Lactuca sativa HOM05D004012 ORTHO05D004752 1.5e-56 224.6 182 64.8
DCAR_015558 Daucus carota HOM05D004012 ORTHO05D004752 2.9e-55 220.3 124 89.5
HPP92_005646 Vanilla planifolia HOM05D004012 ORTHO05D004752 8.3e-55 218.8 231 48.5
TPR.G34339 Trifolium pratense HOM05D004012 ORTHO05D004752 1.6e-50 204.5 465 32.9
SHI03102 Sapria himalayana HOM05D004012 ORTHO05D004752 3.6e-50 203.4 144 64.6
BcaNung06869 Brassica carinata HOM05D004012 ORTHO05D004752 3.4e-48 196.8 132 80.3
HPP92_005679 Vanilla planifolia HOM05D004012 ORTHO05D004752 3.9e-44 183.3 307 37.5
Cpa.g.sc138.54 Carica papaya HOM05D004012 ORTHO05D004752 2.1e-42 177.6 99 90.9
SHI03103 Sapria himalayana HOM05D004012 ORTHO05D004752 4.0e-41 173.3 177 57.6
QL10p034885 Quercus lobata HOM05D004012 ORTHO05D000004 2.9e-39 167.2 106 79.2
Haze_27454 Corylus avellana HOM05D004012 ORTHO05D004752 3.5e-37 160.2 129 62.8
Lju41A56T30 Lonicera japonica HOM05D004012 ORTHO05D004752 4.9e-31 139.8 146 53.4
QL10p034900 Quercus lobata HOM05D004012 ORTHO05D004752 8.6e-28 129.0 116 51.7
Actinidia12240 Actinidia chinensis HOM05D004012 ORTHO05D004752 8.9e-25 119.0 99 61.6
MCO14G229 Micromonas commoda HOM05D004012 ORTHO05D004752 2.9e-23 114.0 215 36.7
A03p08840 Brassica napus HOM05D004012 ORTHO05D004752 1.9e-22 111.3 68 83.8
Ciclev10006318m.g Citrus clementina HOM05D004012 ORTHO05D004752 2.3e-20 104.4 58 91.4
Oeu046377.1 Olea europaea HOM05D004012 ORTHO05D004752 3.0e-20 104.0 56 96.4
PRCOL_00001851 Prasinoderma coloniale HOM05D004012 ORTHO05D004752 3.2e-14 84.0 257 29.6
PSO761G0569 Papaver somniferum HOM05D004012 ORTHO05D004752 2.7e-13 80.9 57 70.2
Actinidia20627 Actinidia chinensis HOM05D004012 ORTHO05D004752 4.8e-10 70.1 67 55.2
VMungo0647G1024 Vigna mungo HOM05D004443 ORTHO05D005421 8.1e-10 69.3 69 47.8
Cc07_g20530 Coffea canephora HOM05D004012 ORTHO05D004752 1.9e-06 58.2 74 43.2


User provided reference genes

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