Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008670 Simmondsia chinensis HOM05D005421 ORTHO05D007601 5.6e-116 421.8 373 100.0
Ah.04g161240 Amaranthus hybridus HOM05D005421 ORTHO05D007601 5.0e-101 372.1 190 91.6
EL10Ac4g09870 Beta vulgaris HOM05D005421 ORTHO05D007601 4.3e-100 369.0 377 88.1
AUR62005243 Chenopodium quinoa HOM05D005421 ORTHO05D007601 5.6e-100 368.6 190 90.0
Ciclev10001489m.g Citrus clementina HOM05D005421 ORTHO05D007601 1.4e-98 364.0 190 90.0
Hund07118 Selenicereus undatus HOM05D005421 ORTHO05D007601 1.4e-98 364.0 190 89.5
CANSAT54G2596 Cannabis sativa HOM05D005421 ORTHO05D007601 1.2e-97 360.9 190 88.4
Aqoxy2G02863 Aquilegia oxysepala HOM05D005421 ORTHO05D007601 1.5e-97 360.5 190 90.0
Peaxi162Scf00037g01816 Petunia axillaris HOM05D005421 ORTHO05D007601 5.8e-97 358.6 190 89.5
GSVIVG01031188001 Vitis vinifera HOM05D005421 ORTHO05D007601 7.5e-97 358.2 189 87.8
Thecc.06G040900 Theobroma cacao HOM05D005421 ORTHO05D007601 1.3e-96 357.5 190 87.9
FvH4_6g07010 Fragaria vesca HOM05D005421 ORTHO05D007601 1.7e-96 357.1 387 76.2
Glyma.10G149900 Glycine max HOM05D005421 ORTHO05D007601 1.7e-96 357.1 382 77.7
Glyma.20G238500 Glycine max HOM05D005421 ORTHO05D007601 1.7e-96 357.1 190 86.8
TAR636G1951 Trochodendron aralioides HOM05D005421 ORTHO05D007601 2.2e-96 356.7 189 88.4
FAN14G1909 Fragaria x ananassa HOM05D005421 ORTHO05D007601 2.9e-96 356.3 386 75.9
Gohir.A10G155100 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.9e-96 356.3 190 88.4
Gohir.D10G110800 Gossypium hirsutum HOM05D005421 ORTHO05D007601 2.9e-96 356.3 190 88.4
Gorai.011G122100 Gossypium raimondii HOM05D005421 ORTHO05D007601 2.9e-96 356.3 190 88.4
RcHm_v2.0_Chr3g0456541 Rosa chinensis HOM05D005421 ORTHO05D007601 3.7e-96 355.9 388 77.1
FAN05G0688 Fragaria x ananassa HOM05D005421 ORTHO05D007601 4.9e-96 355.5 190 86.8
Lalb_Chr02g0148011 Lupinus albus HOM05D005421 ORTHO05D007601 4.9e-96 355.5 190 86.3
Phvul.007G199400 Phaseolus vulgaris HOM05D005421 ORTHO05D007601 4.9e-96 355.5 190 86.3
Psat6g151720 Pisum sativum HOM05D005421 ORTHO05D007601 4.9e-96 355.5 190 86.8
Actinidia35540 Actinidia chinensis HOM05D005421 ORTHO05D007601 6.4e-96 355.1 190 87.4
Manes.13G000084 Manihot esculenta HOM05D005421 ORTHO05D007601 6.4e-96 355.1 190 87.9
CiPaw.07G025400 Carya illinoinensis HOM05D005421 ORTHO05D007601 8.3e-96 354.8 190 86.8
Ca_10154_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.1e-95 354.4 189 87.3
Ca_29832_v3 Cicer arietinum L. HOM05D005421 ORTHO05D007601 1.1e-95 354.4 189 87.3
PSO170G1114 Papaver somniferum HOM05D005421 ORTHO05D007601 1.1e-95 354.4 190 87.4
PSO407G0035 Papaver somniferum HOM05D005421 ORTHO05D007601 1.1e-95 354.4 190 87.4
Prupe.1G236900 Prunus persica HOM05D005421 ORTHO05D007601 1.1e-95 354.4 190 87.4
Cfa006671 Carpinus fangiana HOM05D005421 ORTHO05D007601 2.4e-95 353.2 190 86.8
Haze_04100 Corylus avellana HOM05D005421 ORTHO05D007601 2.4e-95 353.2 190 86.8
CsaV3_2G006840 Cucumis sativus L. HOM05D005421 ORTHO05D007601 2.4e-95 353.2 190 86.8
Solyc01g100060.4 Solanum lycopersicum HOM05D005421 ORTHO05D007601 2.4e-95 353.2 190 88.4
Sopen01g043590 Solanum pennellii HOM05D005421 ORTHO05D007601 2.4e-95 353.2 190 88.4
CAN.G1273.26 Capsicum annuum HOM05D005421 ORTHO05D007601 3.2e-95 352.8 190 88.4
Sabra13G0010600 Salix brachista HOM05D005421 ORTHO05D007601 3.2e-95 352.8 190 86.3
MELO3C004206.2 Cucumis melo HOM05D005421 ORTHO05D007601 5.4e-95 352.1 190 86.8
Eucgr.H03270 Eucalyptus grandis HOM05D005421 ORTHO05D007601 7.1e-95 351.7 189 88.4
QL03p018920 Quercus lobata HOM05D005421 ORTHO05D007601 7.1e-95 351.7 190 85.8
PGSC0003DMG400024728 Solanum tuberosum HOM05D005421 ORTHO05D007601 7.1e-95 351.7 190 88.4
Potri.013G012000 Populus trichocarpa HOM05D005421 ORTHO05D007601 9.2e-95 351.3 190 85.8
HanXRQChr01g0011821 Helianthus annuus HOM05D005421 ORTHO05D007601 1.2e-94 350.9 190 87.4
Sed0018701 Sechium edule HOM05D005421 ORTHO05D007601 1.2e-94 350.9 190 86.8
CSS0046729 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 1.6e-94 350.5 383 76.5
ClCG02G015170 Citrullus lanatus HOM05D005421 ORTHO05D007601 1.6e-94 350.5 190 87.4
MD04G1196900 Malus domestica HOM05D005421 ORTHO05D007601 1.6e-94 350.5 190 86.3
Medtr1g083720 Medicago truncatula HOM05D005421 ORTHO05D007601 1.6e-94 350.5 190 85.3
CSS0007056 Camellia sinensis var. sinensis HOM05D005421 ORTHO05D007601 2.1e-94 350.1 384 76.6
CDE02G0330 Ceratophyllum demersum HOM05D005421 ORTHO05D007601 2.1e-94 350.1 189 84.7
Nitab4.5_0001971g0070 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.1e-94 350.1 190 87.9
Nitab4.5_0002612g0040 Nicotiana tabacum HOM05D005421 ORTHO05D007601 2.1e-94 350.1 190 87.9
Lalb_Chr21g0310441 Lupinus albus HOM05D005421 ORTHO05D007601 2.7e-94 349.7 188 85.6
THA.LOC104805907 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 2.7e-94 349.7 190 86.8
Cc02_g34540 Coffea canephora HOM05D005421 ORTHO05D007601 3.5e-94 349.4 189 86.2
Duzib150G0691 Durio zibethinus HOM05D005421 ORTHO05D007601 3.5e-94 349.4 190 87.4
THA.LOC104820733 Tarenaya hassleriana HOM05D005421 ORTHO05D007601 3.5e-94 349.4 190 85.8
Migut.B01005 Erythranthe guttata HOM05D005421 ORTHO05D007601 4.6e-94 349.0 190 86.3
MD12G1209800 Malus domestica HOM05D005421 ORTHO05D007601 4.6e-94 349.0 379 80.2
Atru.chr2.115 Acer truncatum HOM05D005421 ORTHO05D007601 6.0e-94 348.6 190 86.3
Dinv30846 Davidia involucrata HOM05D005421 ORTHO05D007601 6.0e-94 348.6 190 87.4
VMungo0720G1843 Vigna mungo HOM05D005421 ORTHO05D007601 6.0e-94 348.6 188 85.6
Lj5g0011296 Lotus japonicus HOM05D005421 ORTHO05D007601 7.8e-94 348.2 189 84.1
TWI12G1149 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 7.8e-94 348.2 190 84.7
DCAR_004503 Daucus carota HOM05D005421 ORTHO05D007601 1.3e-93 347.4 190 84.7
PGR031G1007 Punica granatum HOM05D005421 ORTHO05D007601 1.7e-93 347.1 189 86.2
ECA236G4663 Erigeron canadensis HOM05D005421 ORTHO05D007601 2.3e-93 346.7 190 85.3
HPP92_020212 Vanilla planifolia HOM05D005421 ORTHO05D007601 2.3e-93 346.7 190 86.8
HPP92_020232 Vanilla planifolia HOM05D005421 ORTHO05D007601 2.3e-93 346.7 190 86.8
BcaB01g03524 Brassica carinata HOM05D005421 ORTHO05D007601 3.9e-93 345.9 190 83.7
Lsat_1_v5_gn_7_73220 Lactuca sativa HOM05D005421 ORTHO05D007601 3.9e-93 345.9 190 85.3
Sp4g22980 Schrenkiella parvula HOM05D005421 ORTHO05D007601 5.1e-93 345.5 190 83.7
SGA_v2.0_scaffold4G01947 Striga asiatica HOM05D005421 ORTHO05D007601 5.1e-93 345.5 190 84.2
SalBow1G5723 Salvia bowleyana HOM05D005421 ORTHO05D007601 8.6e-93 344.7 189 85.7
Cpa.g.sc48.125 Carica papaya HOM05D005421 ORTHO05D007601 1.1e-92 344.4 190 83.7
MBI18_g04564_MAGBIO Magnolia biondii HOM05D005421 ORTHO05D007601 1.1e-92 344.4 189 84.1
FAN02G3486 Fragaria x ananassa HOM05D005421 ORTHO05D007601 1.5e-92 344.0 204 80.9
CARHR135760 Cardamine hirsuta HOM05D005421 ORTHO05D007601 1.9e-92 343.6 190 83.2
AL4G38520 Arabidopsis lyrata HOM05D005421 ORTHO05D007601 3.3e-92 342.8 190 83.2
TWI56G0052 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 4.3e-92 342.4 208 79.3
Zm00001eb095730 Zea mays HOM05D005421 ORTHO05D007601 5.6e-92 342.0 190 84.2
AT2G40650 Arabidopsis thaliana HOM05D005421 ORTHO05D007601 7.3e-92 341.7 190 82.6
BcaC01g05387 Brassica carinata HOM05D005421 ORTHO05D007601 7.3e-92 341.7 190 82.6
C03p27110 Brassica napus HOM05D005421 ORTHO05D007601 7.3e-92 341.7 190 82.6
BolC3t15092H Brassica oleracea HOM05D005421 ORTHO05D007601 7.3e-92 341.7 190 82.6
BraA03t11510Z Brassica rapa HOM05D005421 ORTHO05D007601 7.3e-92 341.7 190 82.6
Aa31LG3G1470 Aethionema arabicum HOM05D005421 ORTHO05D007601 1.2e-91 340.9 190 84.2
Carub.0004s2294 Capsella rubella HOM05D005421 ORTHO05D007601 1.2e-91 340.9 190 82.6
Mapoly0138s0022 Marchantia polymorpha HOM05D005421 ORTHO05D007601 1.2e-91 340.9 190 82.6
Os09g0103600 Oryza sativa ssp. japonica HOM05D005421 ORTHO05D007601 1.6e-91 340.5 190 84.2
Rhsim11G0092200 Rhododendron simsii HOM05D005421 ORTHO05D007601 3.1e-90 336.3 239 71.1
BcaC02g07328 Brassica carinata HOM05D005421 ORTHO05D007601 5.2e-90 335.5 190 83.2
AagrBONN_evm.TU.Sc2ySwM_117.208 Anthoceros agrestis HOM05D005421 ORTHO05D007601 8.9e-90 334.7 190 81.6
A04p31080 Brassica napus HOM05D005421 ORTHO05D007601 1.5e-89 334.0 190 82.6
vmacro01533 Vaccinium macrocarpon HOM05D005421 ORTHO05D007601 3.4e-89 332.8 242 70.2
CBR_g27792 Chara braunii HOM05D005421 ORTHO05D007601 1.3e-88 330.9 190 81.1
A03p22860 Brassica napus HOM05D005421 ORTHO05D007601 6.4e-88 328.6 213 73.7
C04p68470 Brassica napus HOM05D005421 ORTHO05D007601 6.4e-88 328.6 197 80.2
Nitab4.5_0003248g0020 Nicotiana tabacum HOM05D005421 ORTHO05D007601 1.9e-87 327.0 190 82.6
AUR62000721 Chenopodium quinoa HOM05D005421 ORTHO05D007601 1.2e-86 324.3 167 90.4
Pp3c1_35390 Physcomitrium patens HOM05D005421 ORTHO05D007601 6.0e-86 322.0 189 77.8
BraA04t18563Z Brassica rapa HOM05D005421 ORTHO05D007601 7.8e-86 321.6 211 74.4
COL.COLO4_26689 Corchorus olitorius HOM05D005421 ORTHO05D007601 1.0e-85 321.2 190 79.5
BolC4t28347H Brassica oleracea HOM05D005421 ORTHO05D007601 3.9e-85 319.3 218 72.0
arahy.Tifrunner.gnm1.ann1.1MC3I0 Arachis hypogaea HOM05D005421 ORTHO05D007601 1.9e-84 317.0 266 61.7
BcaB06g29166 Brassica carinata HOM05D005421 ORTHO05D007601 1.9e-84 317.0 190 78.9
SMO361G0640 Selaginella moellendorffii HOM05D005421 ORTHO05D007601 7.3e-84 315.1 190 77.4
Oeu045895.1 Olea europaea HOM05D005421 ORTHO05D007601 2.4e-82 310.1 208 74.5
COL.COLO4_07356 Corchorus olitorius HOM05D005421 ORTHO05D007601 4.0e-82 309.3 167 86.8
arahy.Tifrunner.gnm1.ann1.MB2RBZ Arachis hypogaea HOM05D005421 ORTHO05D007601 4.2e-79 299.3 200 73.0
Dinv24409 Davidia involucrata HOM05D005421 ORTHO05D007601 9.3e-79 298.1 184 78.3
TWI38G1969 Tripterygium wilfordii HOM05D005421 ORTHO05D007601 1.7e-77 293.9 190 72.1
FAN09G4258 Fragaria x ananassa HOM05D000389 ORTHO05D000287 3.3e-76 289.7 155 87.1
Nn4g25707 Nelumbo nucifera HOM05D005421 ORTHO05D007601 9.0e-74 281.6 190 75.8
Cre12.g503400 Chlamydomonas reinhardtii HOM05D005421 ORTHO05D007601 2.7e-70 270.0 190 62.6
Peaxi162Scf00404g00814 Petunia axillaris HOM05D005421 ORTHO05D007601 9.0e-66 255.0 186 69.9
MCO01G394 Micromonas commoda HOM05D005421 ORTHO05D007601 1.3e-56 224.6 185 56.2
Haze_27467 Corylus avellana HOM05D005421 ORTHO05D007601 4.2e-55 219.5 184 57.1
PRCOL_00004539 Prasinoderma coloniale HOM05D005421 ORTHO05D007601 2.8e-51 206.8 192 54.2
Lj9C202T10 Lonicera japonica HOM05D005421 ORTHO05D007601 9.4e-47 191.8 97 89.7
Potri.005G021600 Populus trichocarpa HOM05D005421 ORTHO05D007601 7.9e-46 188.7 139 66.9
SEGI_13779 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 1.8e-42 177.6 94 86.2
Lj9A202T65 Lonicera japonica HOM05D005421 ORTHO05D007601 7.9e-38 162.2 93 78.5
Prupe.6G317400 Prunus persica HOM05D005421 ORTHO05D007601 2.6e-36 157.1 95 76.8
SEGI_07889 Sequoiadendron giganteum HOM05D005421 ORTHO05D007601 6.5e-24 115.9 90 62.2
ATR0469G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.5e-23 114.8 70 74.3
ATR1164G001 Amborella trichopoda HOM05D005421 ORTHO05D007601 1.5e-23 114.8 70 74.3
TAR362G1077 Trochodendron aralioides HOM05D005421 ORTHO05D026565 7.0e-18 95.9 53 83.0
Lj3g0025046 Lotus japonicus HOM05D005421 ORTHO05D026565 2.7e-14 84.0 57 64.9
RcHm_v2.0_Chr7g0209371 Rosa chinensis HOM05D005421 ORTHO05D007601 1.4e-13 81.6 53 64.2
BcaB06g27834 Brassica carinata HOM05D005421 ORTHO05D031867 3.7e-11 73.6 69 53.6
Dinv05263 Davidia involucrata HOM05D002902 ORTHO05D008934 7.7e-09 65.9 42 76.2


User provided reference genes

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