Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 2098.2 980 100.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1689.1 975 79.4
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1679.8 976 78.6
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1669.1 976 78.7
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1668.3 979 78.4
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1663.7 960 79.5
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1656.0 976 77.6
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1653.3 975 77.9
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1652.9 973 78.4
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1652.9 978 77.1
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1651.0 976 76.7
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1648.6 971 78.5
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1647.1 978 77.0
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1646.3 974 77.3
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1645.6 963 78.5
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1640.6 976 77.2
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1640.6 995 76.2
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1640.6 976 76.8
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1639.4 977 76.5
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1635.2 973 77.4
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1634.8 976 76.8
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1632.1 977 76.4
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1630.2 976 76.9
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1628.6 976 76.8
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1627.8 976 75.7
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1626.3 981 76.1
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1626.3 970 76.4
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1620.9 976 76.6
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1619.0 977 76.4
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1609.7 973 75.3
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1607.4 973 77.1
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 1606.7 978 75.9
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1604.0 978 75.7
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1598.2 978 75.4
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1596.6 977 75.4
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1596.3 974 74.5
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1592.4 973 75.2
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1592.0 977 75.4
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1591.2 977 75.3
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1590.9 979 75.2
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1589.7 978 75.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1587.0 964 75.6
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1586.2 978 75.1
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1585.1 979 74.7
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1583.9 969 75.4
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1583.9 985 74.9
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1583.9 974 74.8
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1583.2 975 74.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1582.0 968 75.4
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1578.9 969 75.1
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1576.6 969 75.3
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1574.7 978 73.3
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1573.9 965 75.2
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1572.8 955 75.8
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 964 75.0
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1572.0 966 75.4
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1570.1 970 74.8
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 988 72.8
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1568.5 976 73.4
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1567.0 973 73.9
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1565.8 973 73.7
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1565.4 974 72.9
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1563.5 973 74.3
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1563.1 977 74.0
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 967 74.5
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1561.2 983 73.0
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1561.2 973 72.7
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 965 74.2
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1559.3 979 74.2
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 976 72.7
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1558.9 968 75.1
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1555.8 972 73.6
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1555.0 977 73.0
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1554.7 975 72.6
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1553.1 981 74.0
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1549.6 971 74.2
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1545.4 970 73.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1542.3 973 73.7
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1541.6 979 73.5
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1539.2 976 72.5
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1538.5 970 74.0
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1535.0 987 72.4
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1534.6 976 73.2
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1533.9 970 73.1
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1533.1 927 75.7
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1528.8 974 73.6
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1526.5 946 74.5
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1524.6 981 72.1
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1521.5 977 70.7
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1511.9 978 71.4
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1506.9 980 70.6
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1505.0 962 73.5
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1490.7 979 70.2
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1489.2 982 70.9
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1486.1 973 70.1
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1484.2 972 70.7
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1481.1 983 70.9
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1471.8 986 69.9
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1470.7 894 75.2
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 982 70.2
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1470.3 982 70.2
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1469.5 981 69.8
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1464.9 981 69.5
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1463.7 981 69.0
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1463.4 981 69.7
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1461.8 998 69.1
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1459.5 871 75.8
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1456.0 979 69.4
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1447.2 978 69.4
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1446.0 978 69.5
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1443.3 982 69.2
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1435.6 981 69.1
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1435.2 981 69.1
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1427.9 854 76.6
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1425.2 849 76.3
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1424.5 981 68.2
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1387.1 1002 64.0
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1359.4 762 79.7
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1355.1 980 66.3
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1350.1 982 66.3
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1335.1 983 65.4
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1328.9 983 63.9
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1271.5 789 74.4
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1267.7 854 68.1
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1263.8 773 75.3
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1228.4 791 72.1
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1206.4 787 70.3
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 1.9e-309 1065.8 978 53.4
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.9e-305 1051.2 688 70.6
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 1.1e-299 1033.5 965 53.0
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 6.4e-289 997.7 707 68.2
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 6.2e-284 981.1 968 52.3
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 4.3e-277 958.4 961 50.7
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 3.1e-275 952.2 981 50.1
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.9e-256 889.8 565 73.8
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.7e-233 813.5 843 49.1
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 1.7e-209 733.8 402 80.1
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 5.5e-139 499.6 287 76.0
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 7.5e-120 436.0 344 60.5
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 5.9e-117 426.4 413 53.3
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 2.8e-114 417.5 378 58.2
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 1.9e-102 378.3 219 77.2
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 1.1e-89 335.9 202 73.8
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 3.4e-88 330.9 192 78.1
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 2.4e-86 324.7 276 56.2
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 8.4e-79 299.7 159 83.0
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 2.1e-74 285.0 214 63.1
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.5e-69 267.7 156 72.4
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.2e-64 252.7 143 78.3
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 2.4e-62 245.0 644 29.7
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 3.5e-53 214.5 426 36.4
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 3.7e-42 177.9 164 53.7
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 4.8e-42 177.6 791 23.8
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 1.5e-40 172.6 94 80.9
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 1.3e-39 169.5 150 56.0
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 5.0e-39 167.5 147 56.5
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 3.0e-36 158.3 92 77.2
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 4.3e-35 154.5 92 71.7
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 4.3e-35 154.5 150 53.3
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 5.5e-30 137.5 114 56.1
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 6.7e-28 130.6 89 65.2
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 2.0e-24 119.0 183 37.7
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 3.6e-21 108.2 182 35.7
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.4e-20 106.3 119 47.9
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 8.8e-20 103.6 127 44.9
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 2.0e-16 92.4 71 57.7
Cfa024522 Carpinus fangiana HOM05D004082 ORTHO05D004729 2.6e-16 92.0 188 33.5
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 8.5e-15 87.0 114 43.9
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 1.0e-12 80.1 47 78.7
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 5.2e-12 77.8 46 69.6
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 1.7e-07 62.8 74 48.6
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 2.2e-07 62.4 25 100.0
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 3.8e-07 61.6 44 65.9


User provided reference genes

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