Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0007880 Simmondsia chinensis HOM05D006226 ORTHO05D007738 0.0e+00 1436.0 713 100.0
AUR62010999 Chenopodium quinoa HOM05D006226 ORTHO05D007738 5.8e-223 778.1 701 59.3
AUR62021510 Chenopodium quinoa HOM05D006226 ORTHO05D007738 6.5e-222 774.6 692 59.8
TAR383G0867 Trochodendron aralioides HOM05D006226 ORTHO05D007738 2.3e-219 766.1 683 58.7
GSVIVG01015381001 Vitis vinifera HOM05D006226 ORTHO05D007738 8.7e-219 764.2 686 57.9
CiPaw.03G218400 Carya illinoinensis HOM05D006226 ORTHO05D007738 8.5e-214 747.7 650 59.4
Cfa003249 Carpinus fangiana HOM05D006226 ORTHO05D007738 2.5e-210 736.1 702 56.0
Ciclev10007624m.g Citrus clementina HOM05D006226 ORTHO05D007738 2.5e-210 736.1 697 56.8
Rhsim01G0096900 Rhododendron simsii HOM05D006226 ORTHO05D007738 2.9e-206 722.6 701 55.6
QL02p040023 Quercus lobata HOM05D006226 ORTHO05D007738 1.1e-205 720.7 713 54.8
Manes.16G114900 Manihot esculenta HOM05D006226 ORTHO05D007738 8.8e-203 711.1 706 55.8
Prupe.7G232400 Prunus persica HOM05D006226 ORTHO05D007738 1.8e-200 703.4 669 55.3
Lj7C652G7 Lonicera japonica HOM05D006226 ORTHO05D007738 9.4e-197 691.0 630 56.7
COL.COLO4_34848 Corchorus olitorius HOM05D006226 ORTHO05D007738 1.6e-196 690.3 695 54.7
vmacro20706 Vaccinium macrocarpon HOM05D006226 ORTHO05D007738 1.0e-195 687.6 771 49.4
Dinv36642 Davidia involucrata HOM05D006226 ORTHO05D007738 2.3e-195 686.4 595 58.3
Gorai.009G025300 Gossypium raimondii HOM05D006226 ORTHO05D007738 6.7e-195 684.9 697 53.9
Sabra18G0068600 Salix brachista HOM05D006226 ORTHO05D007738 6.7e-195 684.9 694 52.7
MD15G1183800 Malus domestica HOM05D006226 ORTHO05D007738 7.4e-194 681.4 671 54.4
RcHm_v2.0_Chr2g0090271 Rosa chinensis HOM05D006226 ORTHO05D007738 1.1e-192 677.6 642 56.2
Nitab4.5_0004070g0080 Nicotiana tabacum HOM05D006226 ORTHO05D007738 7.7e-191 671.4 646 55.1
CANSAT56G2062 Cannabis sativa HOM05D006226 ORTHO05D007738 6.5e-190 668.3 698 51.7
FvH4_1g04570 Fragaria vesca HOM05D006226 ORTHO05D007738 8.5e-190 667.9 639 55.1
Actinidia32679 Actinidia chinensis HOM05D006226 ORTHO05D007738 1.9e-189 666.8 619 57.0
ClCG06G008620 Citrullus lanatus HOM05D006226 ORTHO05D007738 3.2e-189 666.0 669 52.6
FAN19G1825 Fragaria x ananassa HOM05D006226 ORTHO05D007738 7.2e-189 664.8 639 54.9
FAN23G2910 Fragaria x ananassa HOM05D006226 ORTHO05D007738 7.2e-189 664.8 639 55.1
FAN26G0472 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.4e-187 660.6 639 54.8
Medtr6g087530 Medicago truncatula HOM05D006226 ORTHO05D007738 1.4e-187 660.6 707 51.6
Psat1g043440 Pisum sativum HOM05D006226 ORTHO05D007738 1.4e-187 660.6 656 52.6
Lj2g0027193 Lotus japonicus HOM05D006226 ORTHO05D007738 1.8e-187 660.2 650 53.7
CAN.G644.14 Capsicum annuum HOM05D006226 ORTHO05D007738 3.0e-187 659.4 690 53.3
PGSC0003DMG400026545 Solanum tuberosum HOM05D006226 ORTHO05D007738 4.0e-187 659.1 631 56.1
Sopen11g026750 Solanum pennellii HOM05D006226 ORTHO05D007738 1.2e-186 657.5 642 54.4
EL10Ac8g18501 Beta vulgaris HOM05D006226 ORTHO05D007738 1.5e-186 657.1 687 55.3
Glyma.07G085400 Glycine max HOM05D006226 ORTHO05D007738 2.0e-186 656.8 704 52.7
Glyma.09G191500 Glycine max HOM05D006226 ORTHO05D007738 2.0e-186 656.8 703 52.3
MELO3C024624.2 Cucumis melo HOM05D006226 ORTHO05D007738 4.4e-186 655.6 659 52.4
Phvul.004G164600 Phaseolus vulgaris HOM05D006226 ORTHO05D007738 2.8e-185 652.9 639 54.6
Potri.018G081500 Populus trichocarpa HOM05D006226 ORTHO05D007738 1.4e-184 650.6 699 51.6
TPR.G10046 Trifolium pratense HOM05D006226 ORTHO05D007738 4.1e-184 649.0 642 52.5
Cpa.g.sc23.97 Carica papaya HOM05D006226 ORTHO05D007738 7.0e-184 648.3 618 56.5
Gohir.A05G023700 Gossypium hirsutum HOM05D006226 ORTHO05D007738 1.2e-183 647.5 697 51.4
arahy.Tifrunner.gnm1.ann1.9IQ1SY Arachis hypogaea HOM05D006226 ORTHO05D007738 2.0e-183 646.7 661 53.1
Cc06_g09770 Coffea canephora HOM05D006226 ORTHO05D007738 2.7e-183 646.4 658 52.7
arahy.Tifrunner.gnm1.ann1.ZKYF3I Arachis hypogaea HOM05D006226 ORTHO05D007738 5.9e-183 645.2 659 52.5
Aqoxy7G03848 Aquilegia oxysepala HOM05D006226 ORTHO05D007738 1.9e-181 640.2 644 53.0
PSO210G1415 Papaver somniferum HOM05D006226 ORTHO05D007738 4.2e-181 639.0 650 53.2
HanXRQChr12g0354991 Helianthus annuus HOM05D006226 ORTHO05D007738 2.7e-180 636.3 698 50.1
PSO210G0226 Papaver somniferum HOM05D006226 ORTHO05D007738 8.0e-180 634.8 656 52.6
Eucgr.C01033 Eucalyptus grandis HOM05D006226 ORTHO05D007738 1.0e-179 634.4 615 52.8
VMungo0464G1421 Vigna mungo HOM05D006226 ORTHO05D007738 5.2e-179 632.1 645 52.9
Hund09200 Selenicereus undatus HOM05D006226 ORTHO05D007738 2.8e-177 626.3 702 51.7
Sed0016798 Sechium edule HOM05D006226 ORTHO05D007738 2.0e-175 620.2 658 50.8
Nitab4.5_0006735g0020 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.1e-172 610.1 707 49.9
PGR142G1694 Punica granatum HOM05D006226 ORTHO05D007738 9.8e-170 601.3 643 53.8
SalBow6G3053 Salvia bowleyana HOM05D006226 ORTHO05D007738 4.9e-169 599.0 632 51.4
Migut.C00317 Erythranthe guttata HOM05D006226 ORTHO05D007738 2.0e-167 593.6 682 48.8
ECA233G1203 Erigeron canadensis HOM05D006226 ORTHO05D007738 2.9e-166 589.7 609 52.1
THA.LOC104808766 Tarenaya hassleriana HOM05D006226 ORTHO05D007738 3.0e-163 579.7 630 49.7
Migut.G00900 Erythranthe guttata HOM05D006226 ORTHO05D007738 6.8e-163 578.6 676 47.3
Lsat_1_v5_gn_8_3640 Lactuca sativa HOM05D006226 ORTHO05D007738 5.7e-162 575.5 652 50.0
Atru.chr7.1363 Acer truncatum HOM05D006226 ORTHO05D007738 2.2e-161 573.5 477 62.3
BraA07t28567Z Brassica rapa HOM05D006226 ORTHO05D007738 1.2e-159 567.8 690 47.4
FAN28G0796 Fragaria x ananassa HOM05D006226 ORTHO05D007738 1.6e-159 567.4 599 51.6
BcaB06g26659 Brassica carinata HOM05D006226 ORTHO05D007738 1.3e-158 564.3 689 47.6
AT3G24560 Arabidopsis thaliana HOM05D006226 ORTHO05D007738 1.7e-158 563.9 628 49.4
CsaV3_1G025440 Cucumis sativus L. HOM05D006226 ORTHO05D007738 1.7e-158 563.9 503 56.1
Thecc.09G109000 Theobroma cacao HOM05D006226 ORTHO05D007738 1.7e-158 563.9 494 60.3
BcaC06g35722 Brassica carinata HOM05D006226 ORTHO05D007738 3.0e-158 563.1 688 46.9
BolC7t41639H Brassica oleracea HOM05D006226 ORTHO05D007738 3.0e-158 563.1 688 46.9
SGA_v2.0_scaffold57G20229 Striga asiatica HOM05D006226 ORTHO05D007738 3.0e-158 563.1 733 45.0
Sp3g22350 Schrenkiella parvula HOM05D006226 ORTHO05D007738 1.1e-157 561.2 644 48.8
AL3G40100 Arabidopsis lyrata HOM05D006226 ORTHO05D007738 1.5e-157 560.8 610 50.0
CARHR100790 Cardamine hirsuta HOM05D006226 ORTHO05D007738 1.5e-157 560.8 631 48.8
Carub.0003s2495 Capsella rubella HOM05D006226 ORTHO05D007738 3.3e-157 559.7 625 48.8
DCAR_002532 Daucus carota HOM05D006226 ORTHO05D007738 4.3e-157 559.3 617 49.4
C07p11670 Brassica napus HOM05D006226 ORTHO05D007738 5.6e-157 558.9 689 46.7
Migut.K01516 Erythranthe guttata HOM05D006226 ORTHO05D007738 6.2e-156 555.4 684 45.6
Thhalv10002431m.g Eutrema salsugineum HOM05D006226 ORTHO05D007738 6.2e-156 555.4 637 47.9
A07p07760 Brassica napus HOM05D006226 ORTHO05D007738 6.8e-155 552.0 711 45.6
Ah.14g081980 Amaranthus hybridus HOM05D006226 ORTHO05D007738 2.9e-153 546.6 514 57.4
CSS0010508 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 2.7e-151 540.0 626 49.5
CSS0044649 Camellia sinensis var. sinensis HOM05D006226 ORTHO05D007738 3.4e-146 523.1 626 48.6
Gohir.D05G025200 Gossypium hirsutum HOM05D006226 ORTHO05D007738 2.2e-145 520.4 509 55.2
Zm00001eb237720 Zea mays HOM05D006226 ORTHO05D007738 7.8e-143 511.9 651 43.5
Aa31sc29G50 Aethionema arabicum HOM05D006226 ORTHO05D007738 1.6e-140 504.2 668 45.5
MBI04_g22018_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 1.1e-131 474.9 375 63.2
Nn8g39152 Nelumbo nucifera HOM05D006226 ORTHO05D007738 4.4e-130 469.5 354 66.7
CANSAT56G4481 Cannabis sativa HOM05D006226 ORTHO05D007738 4.6e-127 459.5 486 51.9
Oeu002240.1 Olea europaea HOM05D006226 ORTHO05D007738 3.1e-123 446.8 477 50.7
Haze_25736 Corylus avellana HOM05D006226 ORTHO05D007738 3.9e-118 429.9 310 67.4
Lalb_Chr06g0174391 Lupinus albus HOM05D006226 ORTHO05D007738 4.6e-111 406.4 315 63.5
unitig_748.g7367 Utricularia gibba HOM05D006226 ORTHO05D007738 1.6e-108 397.9 648 39.4
Solyc11g067040.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 1.1e-99 368.6 343 56.6
ATR0315G013 Amborella trichopoda HOM05D006226 ORTHO05D007738 3.1e-99 367.1 330 56.1
Hma1.2p1_1463F.1_g285100 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 3.1e-99 367.1 387 52.7
Peaxi162Scf01284g00025 Petunia axillaris HOM05D006226 ORTHO05D007738 4.2e-96 356.7 293 61.8
AagrBONN_evm.TU.Sc2ySwM_368.2586 Anthoceros agrestis HOM05D006226 ORTHO05D007738 2.4e-91 340.9 633 35.5
Mapoly0045s0077 Marchantia polymorpha HOM05D006226 ORTHO05D007738 2.8e-84 317.4 678 33.6
Peaxi162Scf01284g00019 Petunia axillaris HOM05D006226 ORTHO05D007738 4.8e-76 290.0 356 47.2
Solyc11g067030.2 Solanum lycopersicum HOM05D006226 ORTHO05D007738 1.1e-75 288.9 352 47.4
SMO170G0077 Selaginella moellendorffii HOM05D006226 ORTHO05D007738 1.9e-72 278.1 620 33.5
MBI04_g29967_MAGBIO Magnolia biondii HOM05D006226 ORTHO05D007738 4.7e-63 246.9 399 40.1
Hma1.2p1_1463F.1_g285110 Hydrangea macrophylla HOM05D006226 ORTHO05D007738 1.5e-61 241.9 294 49.0
ECA234G2375 Erigeron canadensis HOM05D006226 ORTHO05D007738 2.8e-60 237.7 588 30.1
Pp3c5_3840 Physcomitrium patens HOM05D006226 ORTHO05D007738 8.3e-60 236.1 547 33.1
Lalb_Chr06g0174401 Lupinus albus HOM05D006226 ORTHO05D007738 7.0e-59 233.0 318 41.8
CDE04G3650 Ceratophyllum demersum HOM05D001758 ORTHO05D005969 5.9e-50 203.4 149 63.8
ATR0315G018 Amborella trichopoda HOM05D006226 ORTHO05D007738 9.2e-43 179.5 316 38.9
SGA_v2.0_scaffold88G27188 Striga asiatica HOM05D006226 ORTHO05D007738 2.3e-41 174.9 184 49.5
CANSAT56G3567 Cannabis sativa HOM05D006226 ORTHO05D007738 5.0e-41 173.7 187 50.3
CBR_g23439 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-38 162.9 239 40.2
Nitab4.5_0004070g0110 Nicotiana tabacum HOM05D006226 ORTHO05D007738 9.8e-37 159.5 236 39.8
Os02g0266500 Oryza sativa ssp. japonica HOM05D006226 ORTHO05D007738 1.5e-32 145.6 120 53.3
Nitab4.5_0004070g0120 Nicotiana tabacum HOM05D006226 ORTHO05D007738 2.5e-32 144.8 188 46.3
SGA_v2.0_scaffold3110G54276 Striga asiatica HOM05D006226 ORTHO05D007738 4.7e-31 140.6 120 54.2
SEGI_09304 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 5.2e-30 137.1 144 45.8
Actinidia07412 Actinidia chinensis HOM05D006226 ORTHO05D007738 1.1e-19 102.8 302 29.8
SEGI_25817 Sequoiadendron giganteum HOM05D006226 ORTHO05D007738 8.7e-17 93.2 78 55.1
CDE04G0435 Ceratophyllum demersum HOM05D006226 ORTHO05D007738 4.3e-16 90.9 178 30.3
HanXRQChr00c0062g0571551 Helianthus annuus HOM05D006226 ORTHO05D007738 4.3e-16 90.9 117 47.0
Pp3c24_3750 Physcomitrium patens HOM05D028917 ORTHO05D023487 4.3e-16 90.9 336 25.3
HPP92_005262 Vanilla planifolia HOM05D006226 ORTHO05D007738 4.7e-15 87.4 78 60.3
Lsat_1_v5_gn_4_168221 Lactuca sativa HOM05D006226 ORTHO05D007738 8.1e-15 86.7 107 44.9
HanXRQChr00c0062g0571541 Helianthus annuus HOM05D006226 ORTHO05D007738 4.0e-14 84.3 157 31.8
MCO09G126 Micromonas commoda HOM05D006226 ORTHO05D007738 8.4e-12 76.6 213 29.6
HPP92_005261 Vanilla planifolia HOM05D006226 ORTHO05D007738 1.9e-11 75.5 66 51.5
PRCOL_00000419 Prasinoderma coloniale HOM05D006226 ORTHO05D023487 8.7e-09 66.6 272 25.0
AagrBONN_evm.TU.Sc2ySwM_362.2567 Anthoceros agrestis HOM05D028917 ORTHO05D023487 3.6e-07 61.2 155 30.3


User provided reference genes

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