Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0006280 Simmondsia chinensis HOM05D005249 ORTHO05D006457 1.6e-100 369.4 182 100.0
TAR626G0063 Trochodendron aralioides HOM05D005249 ORTHO05D006457 7.3e-61 237.7 186 68.3
Glyma.08G312800 Glycine max HOM05D005249 ORTHO05D006457 1.8e-59 233.0 190 66.3
Glyma.18G102100 Glycine max HOM05D005249 ORTHO05D006457 1.8e-59 233.0 183 68.3
FvH4_3g22190 Fragaria vesca HOM05D005249 ORTHO05D006457 3.0e-59 232.3 183 68.3
CSS0021065 Camellia sinensis var. sinensis HOM05D005249 ORTHO05D006457 4.0e-59 231.9 187 66.8
Lalb_Chr15g0080371 Lupinus albus HOM05D005249 ORTHO05D006457 1.2e-58 230.3 182 67.6
TAR624G0120 Trochodendron aralioides HOM05D005249 ORTHO05D006457 1.5e-58 229.9 186 67.2
VMungo0540G0590 Vigna mungo HOM05D005249 ORTHO05D006457 2.6e-58 229.2 183 66.1
RcHm_v2.0_Chr5g0038151 Rosa chinensis HOM05D005249 ORTHO05D006457 7.5e-58 227.6 183 67.2
Lj8A167T50 Lonicera japonica HOM05D005249 ORTHO05D006457 9.8e-58 227.3 186 67.7
Lj6g0004310 Lotus japonicus HOM05D005249 ORTHO05D006457 9.8e-58 227.3 181 68.0
Haze_09646 Corylus avellana HOM05D005249 ORTHO05D006457 1.3e-57 226.9 183 68.9
Cfa020386 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.7e-57 226.5 183 68.9
Hma1.2p1_1271F.1_g271820 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.7e-57 226.5 186 65.1
Hma1.2p1_1609F.1_g293423 Hydrangea macrophylla HOM05D005249 ORTHO05D006457 1.7e-57 226.5 186 65.1
COL.COLO4_09631 Corchorus olitorius HOM05D005249 ORTHO05D006457 2.9e-57 225.7 182 67.6
arahy.Tifrunner.gnm1.ann1.I048YJ Arachis hypogaea HOM05D005249 ORTHO05D006457 8.3e-57 224.2 183 67.2
Phvul.006G038600 Phaseolus vulgaris HOM05D005249 ORTHO05D006457 8.3e-57 224.2 182 64.8
Eucgr.F03446 Eucalyptus grandis HOM05D005249 ORTHO05D006457 1.1e-56 223.8 184 65.8
Manes.03G127000 Manihot esculenta HOM05D005249 ORTHO05D006457 1.1e-56 223.8 182 65.9
Manes.15G073900 Manihot esculenta HOM05D005249 ORTHO05D006457 1.1e-56 223.8 179 67.0
Prupe.4G209000 Prunus persica HOM05D005249 ORTHO05D006457 1.1e-56 223.8 183 67.2
SGA_v2.0_scaffold258G45797 Striga asiatica HOM05D005249 ORTHO05D006457 1.4e-56 223.4 189 67.7
Dinv22281 Davidia involucrata HOM05D005249 ORTHO05D006457 2.4e-56 222.6 189 65.6
Sabra16G0285800 Salix brachista HOM05D005249 ORTHO05D006457 2.4e-56 222.6 166 70.5
arahy.Tifrunner.gnm1.ann1.EK5LIC Arachis hypogaea HOM05D005249 ORTHO05D006457 3.2e-56 222.2 186 65.6
QL08p011891 Quercus lobata HOM05D005249 ORTHO05D006457 3.2e-56 222.2 182 67.6
QL08p012062 Quercus lobata HOM05D005249 ORTHO05D006457 3.2e-56 222.2 182 67.6
PGR031G1044 Punica granatum HOM05D005249 ORTHO05D006457 4.1e-56 221.9 183 67.2
CANSAT21G2135 Cannabis sativa HOM05D005249 ORTHO05D006457 5.4e-56 221.5 185 67.6
AUR62015702 Chenopodium quinoa HOM05D005249 ORTHO05D006457 5.4e-56 221.5 185 65.9
Aqoxy1G03622 Aquilegia oxysepala HOM05D005249 ORTHO05D006457 9.2e-56 220.7 185 65.4
CDE02G4799 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 9.2e-56 220.7 163 71.8
Ciclev10009689m.g Citrus clementina HOM05D005249 ORTHO05D006457 9.2e-56 220.7 183 67.2
AUR62020502 Chenopodium quinoa HOM05D005249 ORTHO05D006457 1.2e-55 220.3 185 65.9
GSVIVG01002001001 Vitis vinifera HOM05D005249 ORTHO05D006457 1.6e-55 219.9 186 66.7
Gohir.D01G064800 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.0e-55 219.5 183 67.2
Gorai.002G085700 Gossypium raimondii HOM05D005249 ORTHO05D006457 2.0e-55 219.5 183 67.2
Potri.001G420900 Populus trichocarpa HOM05D005249 ORTHO05D006457 2.0e-55 219.5 167 68.9
Gohir.A01G077300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 2.7e-55 219.2 183 67.2
Psat5g216840 Pisum sativum HOM05D005249 ORTHO05D006457 4.6e-55 218.4 182 65.4
THA.LOC104798778 Tarenaya hassleriana HOM05D005249 ORTHO05D006457 7.8e-55 217.6 160 73.1
Duzib213G0461 Durio zibethinus HOM05D005249 ORTHO05D006457 1.0e-54 217.2 183 66.7
Cc05_g13500 Coffea canephora HOM05D005249 ORTHO05D006457 1.3e-54 216.9 194 63.9
Lsat_1_v5_gn_5_5181 Lactuca sativa HOM05D005249 ORTHO05D006457 1.3e-54 216.9 187 63.1
Thecc.07G044000 Theobroma cacao HOM05D005249 ORTHO05D006457 1.3e-54 216.9 186 64.0
Ca_08298_v3 Cicer arietinum L. HOM05D005249 ORTHO05D006457 1.7e-54 216.5 186 65.1
HPP92_017607 Vanilla planifolia HOM05D005249 ORTHO05D006457 1.7e-54 216.5 182 64.3
CiPaw.11G187100 Carya illinoinensis HOM05D005249 ORTHO05D006457 3.0e-54 215.7 183 63.9
MSTRG.15162 Avicennia marina HOM05D005249 ORTHO05D006457 3.9e-54 215.3 182 67.0
Cpa.g.sc97.36 Carica papaya HOM05D005249 ORTHO05D006457 3.9e-54 215.3 159 71.1
ECA246G1486 Erigeron canadensis HOM05D005249 ORTHO05D006457 3.9e-54 215.3 156 70.5
Ah.06g182920 Amaranthus hybridus HOM05D005249 ORTHO05D006457 5.0e-54 214.9 183 65.0
MBI02_g28338_MAGBIO Magnolia biondii HOM05D005249 ORTHO05D006457 6.6e-54 214.5 173 66.5
Nn1g07102 Nelumbo nucifera HOM05D005249 ORTHO05D006457 6.6e-54 214.5 182 59.3
Medtr3g019320 Medicago truncatula HOM05D005249 ORTHO05D006457 1.5e-53 213.4 183 62.8
Actinidia05108 Actinidia chinensis HOM05D005249 ORTHO05D006457 1.9e-53 213.0 187 62.6
Actinidia09913 Actinidia chinensis HOM05D005249 ORTHO05D006457 2.5e-53 212.6 183 63.4
C05p43800 Brassica napus HOM05D005249 ORTHO05D006457 3.3e-53 212.2 188 66.0
BolC5t33095H Brassica oleracea HOM05D005249 ORTHO05D006457 3.3e-53 212.2 181 65.7
Thhalv10021639m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 5.6e-53 211.5 187 66.8
Gohir.D05G366500 Gossypium hirsutum HOM05D005249 ORTHO05D006457 1.2e-52 210.3 183 62.8
TWI38G0945 Tripterygium wilfordii HOM05D005249 ORTHO05D006457 1.2e-52 210.3 183 64.5
A05p28310 Brassica napus HOM05D005249 ORTHO05D006457 2.1e-52 209.5 189 65.1
BraA05t21713Z Brassica rapa HOM05D005249 ORTHO05D006457 2.1e-52 209.5 189 65.1
Carub.0003s2051 Capsella rubella HOM05D005249 ORTHO05D006457 2.1e-52 209.5 183 67.2
Migut.M01785 Erythranthe guttata HOM05D005249 ORTHO05D006457 2.8e-52 209.1 151 70.9
HanXRQChr05g0159111 Helianthus annuus HOM05D005249 ORTHO05D006457 2.8e-52 209.1 155 69.7
Sp3g18550 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.6e-52 208.8 160 71.9
AL8G37450 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 4.7e-52 208.4 166 68.1
Carub.0001s3985 Capsella rubella HOM05D005249 ORTHO05D006457 4.7e-52 208.4 181 64.6
AT1G50900 Arabidopsis thaliana HOM05D005249 ORTHO05D006457 1.0e-51 207.2 180 63.3
AL1G58630 Arabidopsis lyrata HOM05D005249 ORTHO05D006457 1.4e-51 206.8 181 63.5
A05p19870 Brassica napus HOM05D005249 ORTHO05D006457 1.8e-51 206.5 175 66.3
BraA05t20892Z Brassica rapa HOM05D005249 ORTHO05D006457 1.8e-51 206.5 175 66.3
PSO210G5271 Papaver somniferum HOM05D005249 ORTHO05D006457 1.8e-51 206.5 187 60.4
BcaB07g33531 Brassica carinata HOM05D005249 ORTHO05D006457 2.3e-51 206.1 168 66.7
CDE05G2685 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 2.3e-51 206.1 121 81.8
MD03G1207700 Malus domestica HOM05D005249 ORTHO05D006457 3.1e-51 205.7 183 62.3
Sp1g37640 Schrenkiella parvula HOM05D005249 ORTHO05D006457 3.1e-51 205.7 178 64.6
A06p02830 Brassica napus HOM05D005249 ORTHO05D006457 4.0e-51 205.3 180 63.9
BraA06t23490Z Brassica rapa HOM05D005249 ORTHO05D006457 4.0e-51 205.3 180 63.9
Gohir.A04G019300 Gossypium hirsutum HOM05D005249 ORTHO05D006457 4.0e-51 205.3 153 69.3
Atru.chr2.3277 Acer truncatum HOM05D005249 ORTHO05D006457 5.2e-51 204.9 120 83.3
BcaC08g43263 Brassica carinata HOM05D005249 ORTHO05D006457 6.8e-51 204.5 181 63.0
C06p06070 Brassica napus HOM05D005249 ORTHO05D006457 6.8e-51 204.5 181 63.0
BolC6t35720H Brassica oleracea HOM05D005249 ORTHO05D006457 6.8e-51 204.5 181 63.0
Thhalv10011819m.g Eutrema salsugineum HOM05D005249 ORTHO05D006457 8.9e-51 204.1 174 64.4
Oeu042920.1 Olea europaea HOM05D005249 ORTHO05D006457 8.9e-51 204.1 131 78.6
C05p33210 Brassica napus HOM05D005249 ORTHO05D006457 1.5e-50 203.4 173 63.6
Aa31LG10G3330 Aethionema arabicum HOM05D005249 ORTHO05D006457 3.4e-50 202.2 183 61.7
Nitab4.5_0005048g0030 Nicotiana tabacum HOM05D005249 ORTHO05D006457 3.4e-50 202.2 187 61.0
PSO832G4498 Papaver somniferum HOM05D005249 ORTHO05D006457 4.4e-50 201.8 187 58.3
ATR0752G229 Amborella trichopoda HOM05D005249 ORTHO05D006457 5.8e-50 201.4 151 68.9
Peaxi162Scf00387g00046 Petunia axillaris HOM05D005249 ORTHO05D006457 7.5e-50 201.1 187 63.1
EL10Ac4g07899 Beta vulgaris HOM05D005249 ORTHO05D006457 9.8e-50 200.7 184 63.0
PGSC0003DMG400014394 Solanum tuberosum HOM05D005249 ORTHO05D006457 2.9e-49 199.1 185 60.0
CAN.G1781.9 Capsicum annuum HOM05D005249 ORTHO05D006457 3.7e-49 198.7 187 58.8
ClCG10G005560 Citrullus lanatus HOM05D005249 ORTHO05D006457 8.3e-49 197.6 183 60.7
Oeu062605.1 Olea europaea HOM05D005249 ORTHO05D006457 8.3e-49 197.6 167 65.3
unitig_578.g16003 Utricularia gibba HOM05D005249 ORTHO05D006457 8.3e-49 197.6 154 65.6
Sed0007548 Sechium edule HOM05D005249 ORTHO05D006457 1.1e-48 197.2 183 60.7
Solyc10g006370.3 Solanum lycopersicum HOM05D005249 ORTHO05D006457 1.9e-48 196.4 194 58.2
CsaV3_3G005280 Cucumis sativus L. HOM05D005249 ORTHO05D006457 2.4e-48 196.1 183 60.7
Zm00001eb322850 Zea mays HOM05D005249 ORTHO05D006457 9.2e-48 194.1 196 58.2
Rhsim04G0001800 Rhododendron simsii HOM05D005249 ORTHO05D006457 1.2e-47 193.7 139 73.4
MELO3C025397.2 Cucumis melo HOM05D005249 ORTHO05D006457 4.6e-47 191.8 183 59.6
Gorai.009G425200 Gossypium raimondii HOM05D005249 ORTHO05D006457 6.0e-47 191.4 223 51.6
CDE05G0273 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 3.9e-46 188.7 185 56.8
FAN16G3206 Fragaria x ananassa HOM05D005249 ORTHO05D006340 5.0e-46 188.3 293 42.7
Dinv40734 Davidia involucrata HOM05D005249 ORTHO05D006457 1.5e-45 186.8 158 65.2
BcaB02g11192 Brassica carinata HOM05D005249 ORTHO05D006457 2.5e-45 186.0 188 60.1
Sopen10g002320 Solanum pennellii HOM05D005249 ORTHO05D006457 2.5e-45 186.0 124 75.0
FAN11G3900 Fragaria x ananassa HOM05D005249 ORTHO05D006340 7.3e-45 184.5 293 42.3
CDE11G0574 Ceratophyllum demersum HOM05D005249 ORTHO05D006457 1.6e-44 183.3 151 62.9
Os07g0520800 Oryza sativa ssp. japonica HOM05D005249 ORTHO05D006457 1.6e-44 183.3 142 66.9
SMO137G0373 Selaginella moellendorffii HOM05D005249 ORTHO05D006457 8.1e-44 181.0 168 56.5
BcaB07g33530 Brassica carinata HOM05D005249 ORTHO05D006457 5.2e-43 178.3 142 66.9
SEGI_08050 Sequoiadendron giganteum HOM05D005249 ORTHO05D006457 4.4e-42 175.3 115 75.7
CBR_g12744 Chara braunii HOM05D005249 ORTHO05D006457 7.3e-37 157.9 123 67.5
Nitab4.5_0001393g0170 Nicotiana tabacum HOM05D005249 ORTHO05D006457 8.1e-36 154.5 185 53.5
vmacro09735 Vaccinium macrocarpon HOM05D005249 ORTHO05D006457 1.5e-34 150.2 219 46.6
Mapoly0006s0110 Marchantia polymorpha HOM05D005249 ORTHO05D006457 1.3e-33 147.1 117 65.0
Pp3c5_16520 Physcomitrium patens HOM05D005249 ORTHO05D006457 1.7e-33 146.7 181 48.1
CARHR096310 Cardamine hirsuta HOM05D005249 ORTHO05D006457 3.5e-31 139.0 87 82.8
CARHR040950 Cardamine hirsuta HOM05D005249 ORTHO05D006457 4.6e-31 138.7 87 79.3
Rhsim04G0000700 Rhododendron simsii HOM05D005249 ORTHO05D006457 6.6e-30 134.8 87 78.2
Cre12.g551950 Chlamydomonas reinhardtii HOM05D005249 ORTHO05D006457 1.1e-29 134.0 129 50.4
FAN21G3293 Fragaria x ananassa HOM05D005249 ORTHO05D006457 1.9e-29 133.3 82 84.1
Cfa020388 Carpinus fangiana HOM05D005249 ORTHO05D006457 1.2e-28 130.6 82 81.7
BcaB06g26188 Brassica carinata HOM05D005249 ORTHO05D006457 3.6e-28 129.0 87 75.9
TPR.G3850 Trifolium pratense HOM05D005249 ORTHO05D006457 1.1e-27 127.5 81 77.8
Glyma.09G102000 Glycine max HOM05D005249 ORTHO05D006457 9.9e-26 120.9 86 74.4
PRCOL_00000858 Prasinoderma coloniale HOM05D005249 ORTHO05D006457 1.3e-25 120.6 97 58.8
MCO16G329 Micromonas commoda HOM05D005249 ORTHO05D006457 1.6e-23 113.6 100 56.0
Nn1g07101 Nelumbo nucifera HOM05D005249 ORTHO05D006457 5.1e-14 82.0 97 47.4
Atru.chr2.3276 Acer truncatum HOM05D005249 ORTHO05D006457 5.6e-13 78.6 54 74.1
CARHR096330 Cardamine hirsuta HOM05D005249 ORTHO05D006457 7.4e-13 78.2 113 48.7
CARHR040940 Cardamine hirsuta HOM05D005249 ORTHO05D006457 6.2e-12 75.1 90 52.2
BcaC05g27382 Brassica carinata HOM05D005249 ORTHO05D006457 2.4e-11 73.2 54 70.4
BcaC05g27384 Brassica carinata HOM05D005249 ORTHO05D006457 4.0e-11 72.4 69 58.0
Hund02097 Selenicereus undatus HOM05D000420 ORTHO05D000110 1.2e-10 70.9 85 51.8
CBR_g602 Chara braunii HOM05D005249 ORTHO05D006457 4.9e-09 65.5 69 43.5
Ah.04g165680 Amaranthus hybridus HOM05D005769 ORTHO05D006851 1.0e-06 57.8 42 59.5
FAN11G2388 Fragaria x ananassa HOM05D000371 ORTHO05D006340 6.7e-06 55.1 101 39.6


User provided reference genes

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