Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0005720 Simmondsia chinensis HOM05D005375 ORTHO05D006598 1.9e-143 512.7 300 100.0
Nitab4.5_0004445g0070 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.5e-79 300.4 313 58.8
AUR62015884 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.2e-78 296.6 341 51.3
EL10Ac4g07689 Beta vulgaris HOM05D005375 ORTHO05D006598 2.4e-77 293.1 349 56.7
vmacro22307 Vaccinium macrocarpon HOM05D005375 ORTHO05D006598 5.3e-77 292.0 313 64.2
PGSC0003DMG400022298 Solanum tuberosum HOM05D005375 ORTHO05D006598 7.0e-77 291.6 325 55.1
Thecc.07G027900 Theobroma cacao HOM05D005375 ORTHO05D006598 9.1e-77 291.2 324 57.1
AUR62020339 Chenopodium quinoa HOM05D005375 ORTHO05D006598 2.0e-76 290.0 352 50.0
Dinv22229 Davidia involucrata HOM05D005375 ORTHO05D006598 4.5e-76 288.9 316 63.6
Nitab4.5_0005078g0020 Nicotiana tabacum HOM05D005375 ORTHO05D006598 1.3e-75 287.3 313 60.4
Rhsim06G0223700 Rhododendron simsii HOM05D005375 ORTHO05D006598 2.2e-75 286.6 321 53.6
Nitab4.5_0001160g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 3.6e-73 279.3 336 52.4
SGA_v2.0_scaffold8G04388 Striga asiatica HOM05D005375 ORTHO05D006598 1.8e-72 276.9 320 50.6
Dinv40796 Davidia involucrata HOM05D005375 ORTHO05D006598 3.0e-72 276.2 342 57.3
CSS0031566 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 5.2e-72 275.4 347 51.0
Manes.03G136300 Manihot esculenta HOM05D005375 ORTHO05D006598 1.2e-71 274.2 331 50.8
CAN.G337.55 Capsicum annuum HOM05D005375 ORTHO05D006598 1.5e-71 273.9 358 50.6
MSTRG.6961 Avicennia marina HOM05D005375 ORTHO05D006598 3.4e-71 272.7 318 57.2
CSS0021148 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 3.4e-71 272.7 308 54.9
TAR629G0374 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.7e-70 270.4 304 59.9
CSS0047507 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.8e-70 269.6 300 56.0
MSTRG.12999 Avicennia marina HOM05D005375 ORTHO05D006598 1.4e-69 267.3 318 60.1
Cfa020276 Carpinus fangiana HOM05D005375 ORTHO05D006598 5.4e-69 265.4 354 48.9
Cc05_g14340 Coffea canephora HOM05D005375 ORTHO05D006598 9.1e-69 264.6 356 53.7
Aqoxy1G04123 Aquilegia oxysepala HOM05D005375 ORTHO05D006598 1.6e-68 263.8 342 50.0
Nitab4.5_0007749g0010 Nicotiana tabacum HOM05D005375 ORTHO05D006598 2.7e-68 263.1 346 48.6
Lj1C881T5 Lonicera japonica HOM05D005375 ORTHO05D006598 3.5e-68 262.7 329 50.8
TWI38G0072 Tripterygium wilfordii HOM05D005375 ORTHO05D006598 3.5e-68 262.7 333 49.2
DCAR_022591 Daucus carota HOM05D005375 ORTHO05D006598 7.7e-68 261.5 336 50.0
PGR031G3708 Punica granatum HOM05D005375 ORTHO05D006598 1.3e-67 260.8 370 49.5
TAR627G0180 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.3e-67 260.8 358 47.5
Duzib170G0122 Durio zibethinus HOM05D005375 ORTHO05D006598 2.2e-67 260.0 320 52.8
COL.COLO4_09738 Corchorus olitorius HOM05D005375 ORTHO05D006598 8.5e-67 258.1 341 53.1
MD03G1294800 Malus domestica HOM05D005375 ORTHO05D006598 3.2e-66 256.1 345 51.0
Gohir.A04G011700 Gossypium hirsutum HOM05D005375 ORTHO05D006598 4.2e-66 255.8 334 51.2
Ciclev10008309m.g Citrus clementina HOM05D005375 ORTHO05D006598 5.5e-66 255.4 347 49.9
Gorai.009G443800 Gossypium raimondii HOM05D005375 ORTHO05D006598 3.6e-65 252.7 334 50.9
ECA240G0086 Erigeron canadensis HOM05D005375 ORTHO05D006598 4.7e-65 252.3 339 49.9
ClCG10G005050 Citrullus lanatus HOM05D005375 ORTHO05D006598 6.1e-65 251.9 331 46.8
Gohir.D05G374900 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.0e-65 251.5 334 50.0
Potri.011G082000 Populus trichocarpa HOM05D005375 ORTHO05D006598 4.4e-63 245.7 369 43.9
Migut.M01705 Erythranthe guttata HOM05D005375 ORTHO05D006598 7.5e-63 245.0 316 55.7
MD00G1179000 Malus domestica HOM05D005375 ORTHO05D006598 1.3e-62 244.2 375 44.8
HanXRQChr13g0408271 Helianthus annuus HOM05D005375 ORTHO05D006598 4.9e-62 242.3 358 46.1
Peaxi162Scf00235g00721 Petunia axillaris HOM05D005375 ORTHO05D006598 4.9e-62 242.3 347 52.7
Sopen07g033190 Solanum pennellii HOM05D005375 ORTHO05D006598 4.9e-62 242.3 334 54.2
RcHm_v2.0_Chr7g0241441 Rosa chinensis HOM05D005375 ORTHO05D006598 6.3e-62 241.9 384 48.2
Sabra11G0065600 Salix brachista HOM05D005375 ORTHO05D006598 6.3e-62 241.9 366 50.3
Duzib268G0742 Durio zibethinus HOM05D005375 ORTHO05D006598 2.0e-60 236.9 323 55.7
Eucgr.F03508 Eucalyptus grandis HOM05D005375 ORTHO05D006598 4.5e-60 235.7 381 50.4
Ca_06349_v3 Cicer arietinum L. HOM05D005375 ORTHO05D006598 5.9e-60 235.3 300 50.0
HanXRQChr03g0076881 Helianthus annuus HOM05D005375 ORTHO05D006598 7.7e-60 235.0 347 49.0
LjContig00272g0009776 Lotus japonicus HOM05D005375 ORTHO05D006598 1.0e-59 234.6 379 48.8
Sed0014032 Sechium edule HOM05D005375 ORTHO05D006598 3.8e-59 232.6 324 56.2
FAN13G1970 Fragaria x ananassa HOM05D005375 ORTHO05D006598 5.0e-59 232.3 391 41.7
CsaV3_3G004730 Cucumis sativus L. HOM05D005375 ORTHO05D006598 6.6e-59 231.9 327 45.9
Solyc07g064980.3 Solanum lycopersicum HOM05D005375 ORTHO05D006598 8.6e-59 231.5 334 47.3
FAN04G2161 Fragaria x ananassa HOM05D005375 ORTHO05D006598 4.3e-58 229.2 391 41.7
Prupe.8G266900 Prunus persica HOM05D005375 ORTHO05D006598 5.6e-58 228.8 341 50.1
QL08p007584 Quercus lobata HOM05D005375 ORTHO05D006598 2.8e-57 226.5 379 44.6
unitig_747.g21591 Utricularia gibba HOM05D005375 ORTHO05D006598 1.8e-56 223.8 325 46.5
FAN18G4382 Fragaria x ananassa HOM05D005375 ORTHO05D006598 2.3e-56 223.4 383 42.3
PSO302G0025 Papaver somniferum HOM05D005375 ORTHO05D006598 4.0e-56 222.6 364 43.4
FvH4_5g39180 Fragaria vesca HOM05D005375 ORTHO05D006598 6.8e-56 221.9 383 42.3
Phvul.008G272700 Phaseolus vulgaris HOM05D005375 ORTHO05D006598 6.8e-56 221.9 390 42.1
Glyma.14G018200 Glycine max HOM05D005375 ORTHO05D006598 8.9e-56 221.5 393 42.7
PSO210G0227 Papaver somniferum HOM05D005375 ORTHO05D006598 1.5e-55 220.7 367 42.2
Atru.chr2.3534 Acer truncatum HOM05D005375 ORTHO05D006598 3.4e-55 219.5 336 47.9
FAN08G1518 Fragaria x ananassa HOM05D005375 ORTHO05D006598 7.5e-55 218.4 382 43.2
VMungo0647G1984 Vigna mungo HOM05D005375 ORTHO05D006598 7.5e-55 218.4 401 48.4
AL7G26080 Arabidopsis lyrata HOM05D005375 ORTHO05D006598 1.3e-54 217.6 330 50.6
Sp7g24730 Schrenkiella parvula HOM05D005375 ORTHO05D006598 1.3e-54 217.6 322 52.2
Atru.chr2.3553 Acer truncatum HOM05D005375 ORTHO05D006598 2.9e-54 216.5 328 47.6
Gohir.D01G071200 Gossypium hirsutum HOM05D005375 ORTHO05D006598 8.3e-54 214.9 323 52.9
DCAR_016648 Daucus carota HOM05D005375 ORTHO05D006598 1.1e-53 214.5 334 51.2
Carub.0007s1409 Capsella rubella HOM05D005375 ORTHO05D006598 1.8e-53 213.8 321 50.2
BolC1t02212H Brassica oleracea HOM05D005375 ORTHO05D006598 9.2e-53 211.5 338 49.4
Glyma.02G295200 Glycine max HOM05D005375 ORTHO05D006598 9.2e-53 211.5 376 42.8
Migut.H01791 Erythranthe guttata HOM05D005375 ORTHO05D006598 1.2e-52 211.1 319 45.5
CSS0025851 Camellia sinensis var. sinensis HOM05D005375 ORTHO05D006598 2.0e-52 210.3 300 44.7
CiPaw.11G194800 Carya illinoinensis HOM05D005375 ORTHO05D006598 2.0e-52 210.3 372 41.7
Gorai.002G093900 Gossypium raimondii HOM05D005375 ORTHO05D006598 7.8e-52 208.4 323 51.1
Nn1g07350 Nelumbo nucifera HOM05D005375 ORTHO05D006598 7.8e-52 208.4 363 52.1
Aa31LG5G12180 Aethionema arabicum HOM05D005375 ORTHO05D006598 1.7e-51 207.2 345 47.2
Hma1.2p1_1332F.1_g276150 Hydrangea macrophylla HOM05D005375 ORTHO05D006598 6.6e-51 205.3 332 51.5
Lj6g0028194 Lotus japonicus HOM05D005375 ORTHO05D006598 8.6e-51 204.9 365 46.8
Psat2g009920 Pisum sativum HOM05D005375 ORTHO05D006598 8.6e-51 204.9 407 39.8
Gohir.A01G084800 Gossypium hirsutum HOM05D005375 ORTHO05D006598 1.5e-50 204.1 323 51.4
AT4G26750 Arabidopsis thaliana HOM05D005375 ORTHO05D006598 9.5e-50 201.4 319 44.8
TPR.G35360 Trifolium pratense HOM05D005375 ORTHO05D006598 8.0e-49 198.4 419 38.2
CARHR234370 Cardamine hirsuta HOM05D005375 ORTHO05D006598 1.4e-48 197.6 338 47.0
MELO3C014172.2 Cucumis melo HOM05D005375 ORTHO05D006598 1.2e-47 194.5 331 41.1
Lsat_1_v5_gn_9_90720 Lactuca sativa HOM05D005375 ORTHO05D006598 1.5e-47 194.1 352 48.0
Medtr5g093880 Medicago truncatula HOM05D005375 ORTHO05D006598 1.5e-47 194.1 400 47.0
THA.LOC104811633 Tarenaya hassleriana HOM05D005375 ORTHO05D006598 1.5e-47 194.1 314 49.4
BcaC09g52262 Brassica carinata HOM05D005375 ORTHO05D006598 1.1e-45 188.0 333 46.5
Thhalv10025139m.g Eutrema salsugineum HOM05D005375 ORTHO05D006598 7.0e-45 185.3 341 48.1
Os06g0308800 Oryza sativa ssp. japonica HOM05D005375 ORTHO05D006598 1.0e-43 181.4 386 36.0
BraA01t01755Z Brassica rapa HOM05D000504 ORTHO05D000403 3.9e-43 179.5 342 45.0
Zm00001eb281230 Zea mays HOM05D005375 ORTHO05D006598 8.6e-43 178.3 376 37.8
Lalb_Chr04g0248131 Lupinus albus HOM05D005375 ORTHO05D006598 9.5e-42 174.9 419 44.6
Oeu054311.1 Olea europaea HOM05D005375 ORTHO05D006598 4.7e-41 172.6 295 53.6
C01p22820 Brassica napus HOM05D000504 ORTHO05D006598 5.2e-40 169.1 334 44.9
Actinidia05060 Actinidia chinensis HOM05D005375 ORTHO05D006598 6.8e-40 168.7 305 46.9
A01p18000 Brassica napus HOM05D000504 ORTHO05D000403 1.5e-39 167.5 338 44.4
PGR031G2801 Punica granatum HOM05D005375 ORTHO05D006598 3.4e-39 166.4 279 43.4
CANSAT11G2127 Cannabis sativa HOM05D005375 ORTHO05D006598 7.5e-39 165.2 349 42.4
CDE04G3304 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 7.5e-39 165.2 325 38.8
CDE07G0643 Ceratophyllum demersum HOM05D005375 ORTHO05D006598 9.8e-39 164.9 339 38.6
Lj8A173T72 Lonicera japonica HOM05D005375 ORTHO05D006598 2.2e-38 163.7 298 39.9
ATR1101G026 Amborella trichopoda HOM05D005375 ORTHO05D006598 1.6e-36 157.5 316 39.9
SEGI_32868 Sequoiadendron giganteum HOM05D005375 ORTHO05D006598 3.9e-35 152.9 389 36.2
AagrBONN_evm.TU.Sc2ySwM_368.1760 Anthoceros agrestis HOM05D005375 ORTHO05D006598 1.6e-33 147.5 325 35.7
GSVIVG01037729001 Vitis vinifera HOM05D005375 ORTHO05D006598 3.1e-32 143.3 94 75.5
Mapoly0043s0080 Marchantia polymorpha HOM05D005375 ORTHO05D006598 4.0e-32 142.9 409 34.2
SMO271G0101 Selaginella moellendorffii HOM05D005375 ORTHO05D006598 1.7e-30 137.5 339 37.5
Actinidia37374 Actinidia chinensis HOM05D005375 ORTHO05D006598 2.7e-28 130.2 300 36.3
SHI26566 Sapria himalayana HOM05D005375 ORTHO05D006598 1.0e-27 128.3 309 36.6
Nn1g03334 Nelumbo nucifera HOM05D005375 ORTHO05D006598 5.1e-27 125.9 290 36.6
Pp3c12_1420 Physcomitrium patens HOM05D005375 ORTHO05D006598 6.6e-27 125.6 360 32.2
Actinidia20957 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.3e-26 122.1 96 64.6
TAR624G1027 Trochodendron aralioides HOM05D005375 ORTHO05D006598 6.2e-25 119.0 90 67.8
Cpa.g.sc284.2 Carica papaya HOM05D005375 ORTHO05D006598 3.1e-24 116.7 73 74.0
CBR_g50394 Chara braunii HOM05D005375 ORTHO05D006598 1.2e-23 114.8 359 32.6
Zm00001eb381490 Zea mays HOM05D005375 ORTHO05D006598 2.6e-23 113.6 124 57.3
Haze_09747 Corylus avellana HOM05D005375 ORTHO05D006598 1.7e-22 110.9 310 33.2
TAR624G1433 Trochodendron aralioides HOM05D005375 ORTHO05D006598 1.9e-21 107.5 108 57.4
HPP92_015778 Vanilla planifolia HOM05D005375 ORTHO05D006598 5.4e-21 105.9 150 48.7
Actinidia32285 Actinidia chinensis HOM05D005375 ORTHO05D006598 7.3e-18 95.5 108 52.8
Lalb_Chr00c48g0412951 Lupinus albus HOM05D005375 ORTHO05D006598 6.9e-16 89.0 396 35.9
CAN.G396.14 Capsicum annuum HOM05D005375 ORTHO05D006598 1.1e-13 81.6 60 70.0
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 2.4e-13 80.5 49 77.6
BcaC07g38248 Brassica carinata HOM05D005375 ORTHO05D006598 5.4e-13 79.3 92 55.4
C08p09960 Brassica napus HOM05D000504 ORTHO05D000403 5.4e-13 79.3 92 55.4
BolC8t48673H Brassica oleracea HOM05D000504 ORTHO05D000403 5.4e-13 79.3 92 55.4
PRCOL_00004002 Prasinoderma coloniale HOM05D005375 ORTHO05D006598 8.7e-11 72.0 108 39.8
Cre03.g145227 Chlamydomonas reinhardtii HOM05D005375 ORTHO05D006598 1.5e-10 71.2 58 58.6
CAN.G396.4 Capsicum annuum HOM05D005375 ORTHO05D006598 9.0e-08 62.0 48 64.6
CAN.G4023.1 Capsicum annuum HOM05D005375 ORTHO05D006598 9.0e-08 62.0 48 64.6
Lalb_Chr00c48g0413001 Lupinus albus HOM05D005375 ORTHO05D006598 2.6e-07 60.5 42 71.4
Hund23196 Selenicereus undatus HOM05D005375 ORTHO05D006598 5.8e-07 59.3 32 87.5


User provided reference genes

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