Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 0.0e+00 1708.3 859 100.0
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 9.6e-188 661.4 824 48.5
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.1e-187 660.2 831 46.5
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 6.2e-187 658.7 832 46.8
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.3e-180 636.3 813 48.1
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 3.3e-180 636.3 845 47.0
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 4.9e-176 622.5 814 47.7
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 3.2e-167 593.2 827 45.1
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.0e-165 586.6 791 46.0
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 8.7e-165 585.1 837 45.2
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 1.1e-162 578.2 841 45.9
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 9.0e-162 575.1 832 44.4
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 4.5e-161 572.8 858 42.1
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 5.3e-154 549.3 797 42.7
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 3.8e-152 543.1 847 41.2
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 1.2e-150 538.1 848 42.9
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 6.1e-150 535.8 829 42.5
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.0e-149 535.0 864 41.2
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 3.3e-148 530.0 834 41.7
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 8.2e-147 525.4 840 40.6
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 8.2e-147 525.4 845 41.1
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 2.4e-146 523.9 804 41.7
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.4e-146 523.9 749 42.2
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 2.0e-145 520.8 819 41.3
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 9.4e-143 511.9 784 42.5
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 2.1e-142 510.8 814 41.2
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.3e-141 507.3 843 40.0
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 2.3e-141 507.3 857 39.9
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 1.1e-140 505.0 848 40.3
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.5e-140 504.6 811 40.4
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 3.3e-140 503.4 832 39.8
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 9.7e-140 501.9 862 39.3
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 1.7e-139 501.1 861 40.1
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 1.7e-139 501.1 862 39.2
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 4.1e-138 496.5 841 40.4
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 7.0e-138 495.7 818 40.1
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 1.2e-137 495.0 831 38.6
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 5.9e-137 492.7 830 39.8
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 7.7e-137 492.3 825 40.1
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.0e-136 491.9 836 38.9
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 1.3e-136 491.5 857 39.2
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 2.9e-136 490.3 831 38.5
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.8e-136 490.0 795 40.0
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 1.1e-135 488.4 833 39.3
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-135 488.4 833 39.0
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 3.2e-135 486.9 818 40.0
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 5.5e-135 486.1 796 39.1
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 6.1e-134 482.6 808 39.1
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 1.0e-133 481.9 834 38.7
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 5.2e-133 479.6 842 40.0
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 6.8e-133 479.2 861 38.1
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 8.8e-133 478.8 814 37.2
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 1.2e-132 478.4 839 39.0
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 2.0e-132 477.6 813 40.2
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 7.5e-132 475.7 836 39.2
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 1.3e-131 474.9 823 38.5
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 1.1e-130 471.9 817 39.7
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 1.4e-130 471.5 831 39.1
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 4.1e-130 469.9 854 38.3
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 7.0e-130 469.2 828 38.4
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 7.0e-130 469.2 808 38.6
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 4.5e-129 466.5 813 38.5
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 1.7e-128 464.5 810 39.0
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 2.2e-128 464.2 966 34.4
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.2e-128 464.2 795 39.7
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 6.5e-128 462.6 1008 34.5
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 5.5e-127 459.5 841 37.0
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 5.5e-127 459.5 1006 33.5
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 7.2e-127 459.1 836 39.4
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 1.4e-125 454.9 854 37.6
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 5.2e-125 453.0 938 35.0
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 3.4e-124 450.3 854 38.1
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 2.8e-123 447.2 811 38.2
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 1.6e-121 441.4 951 34.7
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.2e-119 432.6 935 35.4
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 7.2e-119 432.6 798 37.6
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 8.9e-117 425.6 816 36.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 1.2e-116 425.2 881 34.4
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 2.7e-113 414.1 818 35.7
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 5.9e-113 412.9 845 36.2
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.2e-110 405.2 825 34.1
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 8.0e-110 402.5 809 35.6
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 2.3e-109 401.0 558 41.9
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.9e-107 394.0 739 39.4
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 1.1e-106 392.1 976 32.4
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 3.5e-105 387.1 839 33.5
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 6.0e-105 386.3 805 34.4
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 6.6e-104 382.9 788 33.8
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 7.3e-103 379.4 766 35.8
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.8e-102 377.5 802 34.4
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 8.9e-101 372.5 821 34.5
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 8.3e-99 365.9 730 38.2
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.1e-98 365.5 654 36.4
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 6.6e-96 356.3 764 33.6
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.1e-93 347.4 805 32.4
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 5.6e-87 326.6 493 41.2
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 3.5e-81 307.4 523 38.4
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 7.8e-81 306.2 844 30.5
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 5.1e-80 303.5 510 40.8
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 5.6e-79 300.1 482 41.7
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 4.4e-76 290.4 852 29.8
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.7e-73 281.2 624 33.2
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 1.7e-72 278.5 526 36.3
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 8.1e-70 269.6 715 32.7
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 4.5e-68 263.8 605 34.0
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 7.6e-68 263.1 447 38.7
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 1.3e-67 262.3 515 36.1
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 4.9e-67 260.4 789 28.6
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 6.4e-67 260.0 469 38.0
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 3.2e-66 257.7 445 36.9
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 5.5e-66 256.9 811 27.5
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 1.2e-65 255.8 478 36.8
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 4.6e-65 253.8 445 37.8
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 1.3e-62 245.7 446 35.4
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 6.2e-62 243.4 613 32.6
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 6.2e-62 243.4 613 32.6
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 2.4e-61 241.5 607 32.6
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 3.1e-61 241.1 607 32.5
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 3.1e-61 241.1 629 31.0
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 6.9e-61 240.0 660 31.4
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 9.0e-61 239.6 616 33.0
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 3.8e-59 234.2 799 27.7
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.1e-58 232.6 507 35.5
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.2e-58 231.1 836 26.2
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.7e-57 228.0 527 33.2
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 2.3e-56 224.9 636 30.7
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 2.3e-56 224.9 833 27.5
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 2.8e-54 218.0 465 32.9
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 2.4e-53 214.9 361 41.0
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 5.3e-53 213.8 594 31.5
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 1.2e-52 212.6 465 32.5
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 1.2e-52 212.6 465 32.5
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.5e-52 212.2 787 28.2
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 7.6e-52 209.9 547 31.6
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.3e-51 209.1 510 32.2
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 2.9e-51 208.0 468 32.7
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 8.4e-51 206.5 454 35.9
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 7.2e-50 203.4 819 27.2
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 7.9e-49 199.9 469 36.0
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 4.3e-47 194.1 402 36.1
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 9.0e-45 186.4 487 31.0
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 1.2e-44 186.0 297 43.1
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 1.4e-42 179.1 789 24.3
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.3e-32 145.2 105 61.0
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.9e-32 144.4 837 23.9
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 8.8e-32 143.3 255 42.0
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 2.0e-28 132.1 162 46.9
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 5.9e-28 130.6 472 23.3
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 3.6e-25 121.3 99 54.5
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.1e-25 120.6 191 41.9
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 1.0e-24 119.8 132 49.2
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 2.0e-23 115.5 191 39.8
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.8e-21 109.0 747 21.7
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 3.2e-18 98.2 158 32.3
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.3e-14 86.3 87 48.3
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 3.7e-14 84.7 104 38.5
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.2e-09 69.7 66 39.4
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-09 69.3 83 43.4
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 1.0e-08 66.6 70 41.4
CBR_g29301 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-08 65.9 115 33.0
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 4.4e-07 61.2 51 56.9
MCO08G197 Micromonas commoda HOM05D004447 ORTHO05D005973 2.8e-06 58.5 61 39.3
CDE04G2616 Ceratophyllum demersum HOM05D002415 ORTHO05D002522 6.3e-06 57.4 56 42.9


User provided reference genes

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