Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0003480 Simmondsia chinensis HOM05D004382 ORTHO05D005181 1.1e-72 276.6 143 100.0
TWI38G0625 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 8.0e-55 217.2 141 79.4
CSS0016237 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 6.7e-54 214.2 142 80.3
Sed0014118 Sechium edule HOM05D004382 ORTHO05D005181 8.8e-54 213.8 138 82.6
Gohir.D05G330700 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.5e-53 213.0 141 78.7
Gorai.009G354500 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.5e-53 213.0 141 78.7
Gohir.A04G050200 Gossypium hirsutum HOM05D004382 ORTHO05D005181 2.0e-53 212.6 141 78.0
PGR142G2616 Punica granatum HOM05D004382 ORTHO05D005181 2.6e-53 212.2 139 82.0
ClCG07G010700 Citrullus lanatus HOM05D004382 ORTHO05D005181 3.3e-53 211.8 138 81.2
GSVIVG01020484001 Vitis vinifera HOM05D004382 ORTHO05D005181 3.3e-53 211.8 139 79.1
Nitab4.5_0002475g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 2.2e-52 209.1 139 78.4
Sed0025739 Sechium edule HOM05D004382 ORTHO05D005181 2.2e-52 209.1 138 80.4
TWI38G0568 Tripterygium wilfordii HOM05D004382 ORTHO05D005181 3.7e-52 208.4 140 75.7
Potri.001G438800 Populus trichocarpa HOM05D004382 ORTHO05D005181 4.8e-52 208.0 142 79.6
CiPaw.11G067100 Carya illinoinensis HOM05D004382 ORTHO05D005181 8.2e-52 207.2 139 78.4
Cc05_g15930 Coffea canephora HOM05D004382 ORTHO05D005181 8.2e-52 207.2 139 79.1
Oeu003841.1 Olea europaea HOM05D004382 ORTHO05D005181 1.1e-51 206.8 140 79.3
Glyma.08G173700 Glycine max HOM05D004382 ORTHO05D005181 1.4e-51 206.5 139 77.7
AUR62004366 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.4e-51 205.7 139 74.8
CsaV3_4G007600 Cucumis sativus L. HOM05D004382 ORTHO05D005181 2.4e-51 205.7 138 79.0
Peaxi162Scf00006g00149 Petunia axillaris HOM05D004382 ORTHO05D005181 2.4e-51 205.7 140 78.6
Nitab4.5_0000313g0040 Nicotiana tabacum HOM05D004382 ORTHO05D005181 4.1e-51 204.9 134 79.9
CSS0001445 Camellia sinensis var. sinensis HOM05D004382 ORTHO05D005181 5.3e-51 204.5 141 78.0
CANSAT56G1367 Cannabis sativa HOM05D004382 ORTHO05D005181 5.3e-51 204.5 139 77.7
Nitab4.5_0000134g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 5.3e-51 204.5 142 76.8
MD05G1215200 Malus domestica HOM05D004382 ORTHO05D005181 1.6e-50 203.0 141 76.6
AUR62022575 Chenopodium quinoa HOM05D004382 ORTHO05D005181 2.7e-50 202.2 139 73.4
Eucgr.F01447 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.7e-50 202.2 153 70.6
Ah.08g216320 Amaranthus hybridus HOM05D004382 ORTHO05D005181 3.5e-50 201.8 139 74.1
Oeu002809.1 Olea europaea HOM05D004382 ORTHO05D005181 4.5e-50 201.4 139 75.5
Thecc.07G156900 Theobroma cacao HOM05D004382 ORTHO05D005181 4.5e-50 201.4 140 77.9
COL.COLO4_05073 Corchorus olitorius HOM05D004382 ORTHO05D005181 5.9e-50 201.1 141 71.6
arahy.Tifrunner.gnm1.ann1.HCTL36 Arachis hypogaea HOM05D004382 ORTHO05D005181 1.0e-49 200.3 139 74.1
Actinidia37109 Actinidia chinensis HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 73.4
arahy.Tifrunner.gnm1.ann1.9QX17Y Arachis hypogaea HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 74.1
MSTRG.7052 Avicennia marina HOM05D004382 ORTHO05D005181 1.3e-49 199.9 141 76.6
Duzib187G1376 Durio zibethinus HOM05D004382 ORTHO05D005181 1.3e-49 199.9 140 76.4
FvH4_3g16050 Fragaria vesca HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 75.5
FAN11G1612 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 75.5
Phvul.005G055200 Phaseolus vulgaris HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 74.8
PGSC0003DMG400022241 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.3e-49 199.9 139 74.8
Hma1.2p1_0193F.1_g084500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 2.2e-49 199.1 141 75.2
VMungo1080G1647 Vigna mungo HOM05D004382 ORTHO05D005181 2.2e-49 199.1 139 74.1
Glyma.15G253700 Glycine max HOM05D004382 ORTHO05D005181 2.9e-49 198.7 138 76.1
Sabra11G0127600 Salix brachista HOM05D004382 ORTHO05D005181 2.9e-49 198.7 139 74.8
Solyc07g066310.3 Solanum lycopersicum HOM05D004382 ORTHO05D005181 2.9e-49 198.7 139 74.8
Sopen07g034490 Solanum pennellii HOM05D004382 ORTHO05D005181 2.9e-49 198.7 139 74.8
Prupe.4G143700 Prunus persica HOM05D004382 ORTHO05D005181 3.8e-49 198.4 139 75.5
Gorai.002G032900 Gossypium raimondii HOM05D004382 ORTHO05D005181 1.1e-48 196.8 142 71.1
Peaxi162Scf00232g01129 Petunia axillaris HOM05D004382 ORTHO05D005181 1.1e-48 196.8 139 73.4
QL04p074767 Quercus lobata HOM05D004382 ORTHO05D005181 1.9e-48 196.1 139 76.3
Ciclev10022793m.g Citrus clementina HOM05D004382 ORTHO05D005181 2.5e-48 195.7 141 77.3
SGA_v2.0_scaffold49G18168 Striga asiatica HOM05D004382 ORTHO05D005181 2.5e-48 195.7 139 76.3
Manes.15G102500 Manihot esculenta HOM05D004382 ORTHO05D005181 5.5e-48 194.5 141 75.9
Aa31LG4G1950 Aethionema arabicum HOM05D004382 ORTHO05D005181 9.4e-48 193.7 142 73.2
SalBow8G0430 Salvia bowleyana HOM05D004382 ORTHO05D005181 9.4e-48 193.7 141 73.8
FAN25G3309 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 139 73.4
Potri.011G142300 Populus trichocarpa HOM05D004382 ORTHO05D005181 1.2e-47 193.4 135 77.8
BcaB02g08662 Brassica carinata HOM05D004382 ORTHO05D005181 1.6e-47 193.0 141 71.6
unitig_8.g4771 Utricularia gibba HOM05D004382 ORTHO05D005181 1.6e-47 193.0 139 71.2
EL10Ac4g08547 Beta vulgaris HOM05D004382 ORTHO05D005181 2.1e-47 192.6 139 74.8
Lj3g0019499 Lotus japonicus HOM05D004382 ORTHO05D005181 2.1e-47 192.6 139 71.9
Potri.001G438700 Populus trichocarpa HOM05D004382 ORTHO05D005181 2.1e-47 192.6 139 73.4
RcHm_v2.0_Chr5g0027021 Rosa chinensis HOM05D004382 ORTHO05D005181 2.1e-47 192.6 139 73.4
BcaC03g15860 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 73.0
BcaC08g45389 Brassica carinata HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 72.5
A02p22470 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 73.0
C02p36150 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 73.0
C06p30200 Brassica napus HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 72.5
BolC2t09629H Brassica oleracea HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 73.0
BolC6t38183H Brassica oleracea HOM05D004382 ORTHO05D005181 2.7e-47 192.2 142 72.5
BraA02t07252Z Brassica rapa HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 73.0
Carub.0002s2591 Capsella rubella HOM05D004382 ORTHO05D005181 2.7e-47 192.2 141 71.6
AT1G79040 Arabidopsis thaliana HOM05D004382 ORTHO05D005181 3.6e-47 191.8 141 71.6
BcaC08g47468 Brassica carinata HOM05D004382 ORTHO05D005181 3.6e-47 191.8 141 70.9
C06p52920 Brassica napus HOM05D004382 ORTHO05D005181 3.6e-47 191.8 141 70.9
BolC6t40310H Brassica oleracea HOM05D004382 ORTHO05D005181 3.6e-47 191.8 141 70.9
CAN.G943.25 Capsicum annuum HOM05D004382 ORTHO05D005181 3.6e-47 191.8 139 72.7
CARHR072720 Cardamine hirsuta HOM05D004382 ORTHO05D005181 3.6e-47 191.8 141 70.9
A07p44190 Brassica napus HOM05D004382 ORTHO05D005181 4.7e-47 191.4 141 70.9
BraA07t31927Z Brassica rapa HOM05D004382 ORTHO05D005181 4.7e-47 191.4 141 70.9
ClCG11G016280 Citrullus lanatus HOM05D004382 ORTHO05D005181 4.7e-47 191.4 141 70.9
Gohir.A01G037100 Gossypium hirsutum HOM05D004382 ORTHO05D005181 6.1e-47 191.0 142 69.0
Nitab4.5_0001791g0030 Nicotiana tabacum HOM05D004382 ORTHO05D005181 8.0e-47 190.7 143 73.4
Aqoxy1G01569 Aquilegia oxysepala HOM05D004382 ORTHO05D005181 1.0e-46 190.3 139 69.1
A07p27340 Brassica napus HOM05D004382 ORTHO05D005181 1.0e-46 190.3 142 71.8
BraA07t30375Z Brassica rapa HOM05D004382 ORTHO05D005181 1.0e-46 190.3 142 71.8
FAN21G1818 Fragaria x ananassa HOM05D004382 ORTHO05D005181 1.4e-46 189.9 139 71.9
Lalb_Chr01g0015971 Lupinus albus HOM05D004382 ORTHO05D005181 1.4e-46 189.9 136 75.0
Nn3g20146 Nelumbo nucifera HOM05D002089 ORTHO05D011346 1.4e-46 189.9 138 74.6
Migut.H01700 Erythranthe guttata HOM05D004382 ORTHO05D005181 1.8e-46 189.5 139 73.4
BcaB02g07194 Brassica carinata HOM05D004382 ORTHO05D005181 3.0e-46 188.7 142 71.1
BcaB05g25168 Brassica carinata HOM05D004382 ORTHO05D005181 3.0e-46 188.7 142 71.1
Lalb_Chr03g0031561 Lupinus albus HOM05D004382 ORTHO05D005181 3.0e-46 188.7 141 70.2
Sp5g34090 Schrenkiella parvula HOM05D004382 ORTHO05D005181 3.0e-46 188.7 142 70.4
Hund10309 Selenicereus undatus HOM05D004382 ORTHO05D005181 4.0e-46 188.3 139 69.8
HanXRQChr08g0232801 Helianthus annuus HOM05D004382 ORTHO05D005181 5.2e-46 188.0 140 71.4
Lalb_Chr25g0285191 Lupinus albus HOM05D004382 ORTHO05D005181 5.2e-46 188.0 132 72.0
Thhalv10019302m.g Eutrema salsugineum HOM05D004382 ORTHO05D005181 6.8e-46 187.6 142 69.7
MD10G1198300 Malus domestica HOM05D004382 ORTHO05D005181 6.8e-46 187.6 141 71.6
Potri.011G142200 Populus trichocarpa HOM05D004382 ORTHO05D005181 6.8e-46 187.6 139 71.9
vmacro09788 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 8.8e-46 187.2 143 69.9
Hma1.2p1_0321F.1_g124500 Hydrangea macrophylla HOM05D004382 ORTHO05D005181 1.2e-45 186.8 139 70.5
Rhsim04G0006200 Rhododendron simsii HOM05D004382 ORTHO05D005181 1.2e-45 186.8 136 72.8
HanXRQChr05g0160651 Helianthus annuus HOM05D004382 ORTHO05D005181 1.5e-45 186.4 139 69.1
DCAR_009633 Daucus carota HOM05D004382 ORTHO05D005181 2.6e-45 185.7 139 70.5
ECA236G0888 Erigeron canadensis HOM05D004382 ORTHO05D005181 2.6e-45 185.7 139 69.8
ATR1098G153 Amborella trichopoda HOM05D004382 ORTHO05D005181 3.4e-45 185.3 142 69.7
MSTRG.14535 Avicennia marina HOM05D004382 ORTHO05D005181 5.7e-45 184.5 141 73.0
DCAR_013749 Daucus carota HOM05D004382 ORTHO05D005181 5.7e-45 184.5 141 70.9
Medtr2g064650 Medicago truncatula HOM05D004382 ORTHO05D005181 1.7e-44 183.0 139 71.9
MBI02_g25371_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 2.2e-44 182.6 140 69.3
Sed0016780 Sechium edule HOM05D004382 ORTHO05D005181 3.7e-44 181.8 136 70.6
TPR.G10344 Trifolium pratense HOM05D004382 ORTHO05D005181 3.7e-44 181.8 139 71.2
AL2G39500 Arabidopsis lyrata HOM05D004382 ORTHO05D005181 6.3e-44 181.0 135 70.4
HPP92_016563 Vanilla planifolia HOM05D004382 ORTHO05D005181 6.3e-44 181.0 141 68.1
SalBow5G1313 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.4e-43 179.9 140 71.4
SalBow5G2519 Salvia bowleyana HOM05D004382 ORTHO05D005181 1.4e-43 179.9 140 71.4
Solyc12g017250.2 Solanum lycopersicum HOM05D004382 ORTHO05D005181 1.4e-43 179.9 144 68.8
Atru.chr2.1854 Acer truncatum HOM05D004382 ORTHO05D005181 1.8e-43 179.5 140 72.1
Sopen12g008070 Solanum pennellii HOM05D004382 ORTHO05D005181 1.8e-43 179.5 144 69.4
Manes.03G082900 Manihot esculenta HOM05D004382 ORTHO05D005181 7.0e-43 177.6 139 71.9
TAR627G0744 Trochodendron aralioides HOM05D004382 ORTHO05D005181 7.0e-43 177.6 135 68.1
Ca_03704_v3 Cicer arietinum L. HOM05D004382 ORTHO05D005181 1.6e-42 176.4 139 68.3
THA.LOC104812349 Tarenaya hassleriana HOM05D004382 ORTHO05D005181 2.7e-42 175.6 118 73.7
DCAR_016816 Daucus carota HOM05D004382 ORTHO05D005181 3.5e-42 175.3 139 66.9
PSO541G3267 Papaver somniferum HOM05D004382 ORTHO05D005181 5.9e-42 174.5 141 61.7
PSO675G7775 Papaver somniferum HOM05D004382 ORTHO05D005181 5.9e-42 174.5 141 61.7
Lsat_1_v5_gn_7_116120 Lactuca sativa HOM05D004382 ORTHO05D005181 1.0e-41 173.7 141 67.4
Zm00001eb171230 Zea mays HOM05D004382 ORTHO05D005181 1.3e-41 173.3 133 68.4
Os08g0200300 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.7e-41 172.9 139 64.7
Psat1g002320 Pisum sativum HOM05D004382 ORTHO05D005181 1.7e-41 172.9 139 66.9
CDE04G0985 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 5.0e-41 171.4 139 66.9
CDE12G0390 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 2.5e-40 169.1 139 65.5
CDE11G0376 Ceratophyllum demersum HOM05D004382 ORTHO05D005181 9.5e-40 167.2 139 64.0
Sabra16G0296700 Salix brachista HOM05D004382 ORTHO05D005181 1.0e-38 163.7 155 63.9
Sabra11G0127700 Salix brachista HOM05D004382 ORTHO05D005181 1.4e-38 163.3 141 66.0
Rhsim06G0237200 Rhododendron simsii HOM05D006828 ORTHO05D008312 4.0e-38 161.8 89 87.6
Dinv19628 Davidia involucrata HOM05D006828 ORTHO05D008312 3.4e-37 158.7 86 90.7
vmacro11652 Vaccinium macrocarpon HOM05D004382 ORTHO05D005181 7.5e-37 157.5 152 60.5
Os07g0147550 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.3e-36 156.8 139 59.7
Eucgr.F03186 Eucalyptus grandis HOM05D004382 ORTHO05D005181 2.8e-36 155.6 110 72.7
Os07g0147500 Oryza sativa ssp. japonica HOM05D004382 ORTHO05D005181 1.1e-35 153.7 139 57.6
Gohir.D01G024400 Gossypium hirsutum HOM05D004382 ORTHO05D005181 1.2e-34 150.2 114 65.8
SEGI_14655 Sequoiadendron giganteum HOM05D004382 ORTHO05D005181 6.6e-33 144.4 136 57.4
Mapoly0001s0109 Marchantia polymorpha HOM05D004382 ORTHO05D005181 5.6e-32 141.4 138 58.0
SMO134G0197 Selaginella moellendorffii HOM05D004382 ORTHO05D005181 9.5e-32 140.6 117 61.5
PGSC0003DMG400002312 Solanum tuberosum HOM05D004382 ORTHO05D005181 1.5e-29 133.3 144 59.0
Cpa.g.c37194 Carica papaya HOM05D004382 ORTHO05D005181 5.8e-29 131.3 92 76.1
MBI18_g37150_MAGBIO Magnolia biondii HOM05D004382 ORTHO05D005181 9.8e-29 130.6 139 56.1
Mapoly0006s0055 Marchantia polymorpha HOM05D004382 ORTHO05D005181 2.9e-28 129.0 147 51.0
MELO3C016181.2 Cucumis melo HOM05D004382 ORTHO05D005181 3.2e-27 125.6 91 75.8
Pp3c27_2320 Physcomitrium patens HOM05D004382 ORTHO05D005181 7.0e-27 124.4 111 61.3
Pp3c27_2340 Physcomitrium patens HOM05D004382 ORTHO05D005181 9.2e-27 124.0 143 51.0
AagrBONN_evm.TU.Sc2ySwM_228.2640 Anthoceros agrestis HOM05D004382 ORTHO05D005181 2.0e-26 122.9 143 49.0
Pp3c5_4230 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.0e-26 122.9 140 52.1
Pp3c16_5650 Physcomitrium patens HOM05D004382 ORTHO05D005181 2.7e-26 122.5 147 49.7
Cpa.g.c38697 Carica papaya HOM05D004382 ORTHO05D005181 8.9e-22 107.5 53 94.3
PGR083G0343 Punica granatum HOM05D004382 ORTHO05D005181 1.2e-21 107.1 91 64.8
CBR_g30109 Chara braunii HOM05D000004 ORTHO05D000002 1.7e-20 103.2 67 70.1
PRCOL_00003342 Prasinoderma coloniale HOM05D004382 ORTHO05D005181 2.4e-19 99.4 85 55.3
Haze_08525 Corylus avellana HOM05D004382 ORTHO05D005181 1.5e-16 90.1 141 46.1
Cre06.g261000 Chlamydomonas reinhardtii HOM05D004382 ORTHO05D005181 2.5e-16 89.4 80 57.5
Atru.chr6.732 Acer truncatum HOM05D004382 ORTHO05D005181 2.2e-12 76.3 82 58.5
TAR626G0945 Trochodendron aralioides HOM05D004382 ORTHO05D005181 1.1e-08 63.9 75 53.3
TPR.G25891 Trifolium pratense HOM05D004382 ORTHO05D005181 5.2e-06 55.1 30 93.3


User provided reference genes

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