Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 0.0e+00 1470.3 740 100.0
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 0.0e+00 1091.6 753 75.0
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1082.4 760 73.7
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 1.0e-311 1072.8 766 73.2
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 3.5e-311 1071.2 760 73.0
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 8.5e-310 1066.6 768 72.0
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 1.2e-303 1046.2 764 71.2
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 1.7e-302 1042.3 752 70.5
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 2.2e-302 1042.0 763 70.4
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 8.5e-302 1040.0 739 72.9
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 7.2e-301 1036.9 757 72.4
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 2.8e-300 1035.0 760 70.0
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 1.2e-298 1029.6 764 71.1
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 1.2e-298 1029.6 763 70.5
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 1.1e-296 1023.1 778 68.5
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 2.4e-296 1021.9 761 69.4
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 1.2e-295 1019.6 756 71.0
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 1.6e-295 1019.2 759 70.2
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 7.8e-295 1016.9 760 69.9
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 5.0e-294 1014.2 781 68.4
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 1.1e-293 1013.1 763 70.0
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.0e-291 1006.5 767 69.0
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 4.0e-291 1004.6 755 70.2
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 1.5e-290 1002.7 766 68.5
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 5.7e-290 1000.7 766 68.1
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 7.5e-290 1000.3 765 68.5
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 9.8e-290 1000.0 767 68.1
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 1.3e-289 999.6 757 67.9
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 8.3e-289 996.9 765 69.0
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 9.2e-288 993.4 758 68.2
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 3.5e-287 991.5 758 67.9
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 7.8e-287 990.3 760 69.2
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 7.8e-287 990.3 751 67.8
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 2.3e-286 988.8 756 67.9
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 8.6e-286 986.9 769 67.2
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 4.3e-285 984.6 756 67.3
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 1.2e-284 983.0 757 67.4
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 1.0e-283 979.9 753 68.1
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 2.3e-283 978.8 755 67.8
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 5.2e-283 977.6 775 66.7
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 1.2e-282 976.5 753 67.3
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.5e-282 976.1 775 66.5
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.6e-282 975.3 775 66.6
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 9.8e-282 973.4 765 67.7
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 1.9e-280 969.1 757 66.7
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 2.0e-279 965.7 758 66.4
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 6.0e-279 964.1 762 64.8
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.7e-278 962.6 786 66.5
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 1.5e-277 959.5 751 66.8
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 1.5e-277 959.5 758 67.0
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 3.3e-277 958.4 769 66.1
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 3.1e-275 951.8 764 65.3
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 2.0e-274 949.1 769 65.8
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 3.7e-273 944.9 762 66.1
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 1.1e-272 943.3 777 64.6
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-272 943.0 813 64.1
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 8.1e-268 927.2 781 65.3
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 4.0e-267 924.9 768 65.1
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 1.5e-266 922.9 763 65.4
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 1.5e-266 922.9 765 64.6
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 5.8e-266 921.0 763 65.3
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 1.9e-264 916.0 759 63.8
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 2.4e-264 915.6 775 65.2
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 2.4e-264 915.6 757 63.8
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 7.8e-263 910.6 760 63.9
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 6.6e-262 907.5 760 62.9
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 1.6e-260 902.9 759 62.7
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 3.6e-260 901.7 759 62.6
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 4.0e-259 898.3 759 62.6
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 4.0e-259 898.3 759 62.6
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.4e-258 895.2 760 63.8
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 6.4e-257 891.0 783 60.8
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 8.4e-257 890.6 758 61.3
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.8e-252 875.5 759 61.5
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.1e-251 873.6 768 63.0
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 2.6e-250 869.0 914 54.8
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 1.9e-248 862.8 732 61.6
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.0e-246 857.1 759 60.3
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 3.0e-246 855.5 751 61.4
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 3.9e-246 855.1 758 60.0
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 5.1e-246 854.7 751 61.1
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.8e-244 849.0 757 62.4
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 4.0e-243 845.1 749 61.4
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 1.5e-242 843.2 531 77.6
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 1.3e-241 840.1 520 78.8
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 3.8e-241 838.6 744 60.8
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 3.5e-239 832.0 681 65.2
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 4.6e-239 831.6 756 60.1
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 3.1e-235 818.9 518 78.2
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 3.9e-230 802.0 735 58.8
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 1.6e-228 796.6 700 60.9
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 5.5e-224 781.6 643 66.4
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.3e-221 771.9 744 59.1
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.3e-217 760.4 766 55.0
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 1.1e-216 757.3 737 57.5
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 5.9e-210 734.9 813 49.8
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 3.9e-206 722.2 631 60.5
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 1.6e-199 700.3 842 46.7
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 2.7e-199 699.5 754 49.6
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 7.0e-187 658.3 751 50.5
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.0e-182 642.9 758 49.6
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 1.5e-181 640.6 758 49.7
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 3.1e-179 632.9 754 48.9
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 2.0e-178 630.2 724 48.3
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.8e-178 628.2 758 49.1
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.4e-174 617.5 744 49.6
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 1.0e-169 601.3 805 42.7
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.2e-157 561.2 452 66.4
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 1.5e-144 517.7 342 74.3
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 1.8e-126 457.6 456 55.7
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 2.8e-111 407.1 217 89.4
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.3e-100 371.7 411 50.4
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 1.4e-97 361.7 241 75.1
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 5.2e-81 306.6 500 36.0
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 2.4e-78 297.7 608 32.1
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 5.4e-70 270.0 145 89.0
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 5.0e-68 263.5 367 47.1
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 6.3e-63 246.5 237 60.3
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 4.1e-62 243.8 236 59.7
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 4.1e-62 243.8 281 53.7
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 2.0e-61 241.5 524 30.7
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 1.6e-58 231.9 127 86.6
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.1e-54 217.2 121 86.0
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 7.0e-54 216.5 167 66.5
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 4.1e-46 190.7 125 73.6
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 7.1e-46 189.9 107 82.2
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 2.1e-45 188.3 210 53.8
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.3e-44 185.7 179 62.6
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 1.6e-37 162.2 180 54.4
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 1.7e-28 132.1 141 48.9
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 2.1e-26 125.2 96 67.7
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 2.0e-16 92.0 62 69.4
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 4.9e-15 87.4 148 38.5
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 1.4e-14 85.9 130 44.6
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 1.3e-07 62.8 44 72.7
TWI59G0928 Tripterygium wilfordii HOM05D005319 ORTHO05D006632 3.8e-07 61.2 478 21.1
ClCG04G004810 Citrullus lanatus HOM05D004811 ORTHO05D044609 6.5e-07 60.5 90 40.0
Sed0000937 Sechium edule HOM05D004811 ORTHO05D044609 1.4e-06 59.3 43 62.8
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 5.5e-06 57.4 117 37.6
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 5.5e-06 57.4 117 37.6
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 9.3e-06 56.6 32 78.1


User provided reference genes

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