Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc16g0003130 Simmondsia chinensis HOM05D007742 ORTHO05D004072 1.1e-245 852.8 419 100.0
Hund19588 Selenicereus undatus HOM05D007742 ORTHO05D004072 5.6e-40 169.5 498 29.1
CiPaw.15G155500 Carya illinoinensis HOM05D007742 ORTHO05D004072 2.1e-39 167.5 603 26.0
Dinv33270 Davidia involucrata HOM05D007742 ORTHO05D004072 1.7e-36 157.9 626 24.6
Potri.T125604 Populus trichocarpa HOM05D007742 ORTHO05D004072 2.4e-35 154.1 491 28.1
Cfa007153 Carpinus fangiana HOM05D007742 ORTHO05D004072 4.1e-35 153.3 577 25.6
QL02p068827 Quercus lobata HOM05D007742 ORTHO05D004072 4.1e-35 153.3 548 25.2
Atru.chr6.2712 Acer truncatum HOM05D007742 ORTHO05D004072 5.4e-35 152.9 520 27.1
TAR374G0633 Trochodendron aralioides HOM05D007742 ORTHO05D004072 5.4e-35 152.9 150 45.3
EL10As2g23272 Beta vulgaris HOM05D007742 ORTHO05D004072 7.1e-35 152.5 194 41.2
Potri.009G112676 Populus trichocarpa HOM05D007742 ORTHO05D004072 9.2e-35 152.1 491 27.5
Thhalv10013728m.g Eutrema salsugineum HOM05D009880 ORTHO05D004072 1.6e-34 151.4 407 27.8
Nn4g22099 Nelumbo nucifera HOM05D007742 ORTHO05D004072 2.3e-33 147.5 153 46.4
Prupe.3G314400 Prunus persica HOM05D007742 ORTHO05D004072 4.7e-31 139.8 581 26.0
QL02p069032 Quercus lobata HOM05D007742 ORTHO05D004072 4.7e-31 139.8 542 24.5
Ah.03g136430 Amaranthus hybridus HOM05D007742 ORTHO05D004072 6.2e-31 139.4 165 39.4
Cc07_g01400 Coffea canephora HOM05D007742 ORTHO05D004072 1.1e-30 138.7 485 28.2
Ciclev10014788m.g Citrus clementina HOM05D007742 ORTHO05D004072 6.8e-30 136.0 157 40.8
Ciclev10014656m.g Citrus clementina HOM05D007742 ORTHO05D004072 2.6e-29 134.0 148 41.9
AT5G13920 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.3e-28 131.7 430 25.3
AL6G24570 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 2.9e-28 130.6 138 42.8
PSO357G0543 Papaver somniferum HOM05D007742 ORTHO05D004072 2.9e-28 130.6 167 37.1
PSO170G3234 Papaver somniferum HOM05D007742 ORTHO05D004072 4.9e-28 129.8 143 41.3
Sabra09G0086100 Salix brachista HOM05D007742 ORTHO05D004072 4.9e-28 129.8 481 25.8
Sp6g30080 Schrenkiella parvula HOM05D009880 ORTHO05D004072 3.2e-27 127.1 401 25.9
CARHR284540 Cardamine hirsuta HOM05D009880 ORTHO05D004072 4.2e-27 126.7 409 27.4
CARHR199510 Cardamine hirsuta HOM05D009880 ORTHO05D004072 5.4e-27 126.3 179 39.1
Carub.0006s1211 Capsella rubella HOM05D009880 ORTHO05D004072 7.1e-27 125.9 165 38.2
Aqoxy5G03036 Aquilegia oxysepala HOM05D007742 ORTHO05D004072 9.2e-27 125.6 160 36.2
Aa31LG2G11760 Aethionema arabicum HOM05D009880 ORTHO05D004072 1.6e-26 124.8 433 25.9
Haze_14967 Corylus avellana HOM05D007742 ORTHO05D004072 2.1e-26 124.4 576 25.0
Sabra09G0086000 Salix brachista HOM05D007742 ORTHO05D004072 2.1e-26 124.4 493 25.2
MSTRG.25687 Avicennia marina HOM05D007742 ORTHO05D004072 3.5e-26 123.6 453 26.5
BcaB01g05328 Brassica carinata HOM05D009880 ORTHO05D004072 7.8e-26 122.5 164 38.4
C03p07260 Brassica napus HOM05D009880 ORTHO05D004072 7.8e-26 122.5 164 38.4
Lalb_Chr22g0359781 Lupinus albus HOM05D007742 ORTHO05D004072 1.7e-25 121.3 510 23.9
EL10As2g23251 Beta vulgaris HOM05D007742 ORTHO05D004072 3.0e-25 120.6 160 37.5
Potri.T125504 Populus trichocarpa HOM05D007742 ORTHO05D004072 5.1e-25 119.8 153 39.9
BraA03t09959Z Brassica rapa HOM05D009880 ORTHO05D004072 1.1e-24 118.6 164 37.2
A03p06280 Brassica napus HOM05D009880 ORTHO05D004072 1.5e-24 118.2 164 37.2
VMungo1383G1777 Vigna mungo HOM05D007742 ORTHO05D004072 4.3e-24 116.7 499 23.6
HPP92_017732 Vanilla planifolia HOM05D008124 ORTHO05D004072 5.6e-24 116.3 153 41.8
Aa31LG2G11790 Aethionema arabicum HOM05D009880 ORTHO05D004072 9.6e-24 115.5 407 24.6
Duzib138G0881 Durio zibethinus HOM05D007742 ORTHO05D004072 2.8e-23 114.0 522 26.2
Lj1g0016784 Lotus japonicus HOM05D007742 ORTHO05D001134 4.7e-23 113.2 153 37.9
Cc07_g01390 Coffea canephora HOM05D007742 ORTHO05D004072 6.2e-23 112.8 115 47.8
CANSAT64G0620 Cannabis sativa HOM05D008124 ORTHO05D004072 1.1e-22 112.1 153 35.9
Lj2g0008812 Lotus japonicus HOM05D007742 ORTHO05D004072 2.4e-22 110.9 153 37.3
AUR62037803 Chenopodium quinoa HOM05D007742 ORTHO05D004072 3.1e-22 110.5 180 33.3
arahy.Tifrunner.gnm1.ann1.T3P4RE Arachis hypogaea HOM05D007742 ORTHO05D004072 4.0e-22 110.2 142 37.3
CANSAT64G0751 Cannabis sativa HOM05D007742 ORTHO05D004072 6.9e-22 109.4 475 26.3
arahy.Tifrunner.gnm1.ann1.U642C8 Arachis hypogaea HOM05D007742 ORTHO05D004072 2.0e-21 107.8 141 37.6
Glyma.19G105500 Glycine max HOM05D007742 ORTHO05D004072 2.0e-21 107.8 481 23.3
Lj1g0006134 Lotus japonicus HOM05D007742 ORTHO05D004072 2.0e-21 107.8 542 22.5
Os03g0786500 Oryza sativa ssp. japonica HOM05D008124 ORTHO05D004072 3.4e-21 107.1 166 31.9
QL02p069084 Quercus lobata HOM05D007742 ORTHO05D004072 3.4e-21 107.1 420 23.6
Carub.0005s0890 Capsella rubella HOM05D008124 ORTHO05D004072 5.8e-21 106.3 126 40.5
arahy.Tifrunner.gnm1.ann1.L07F2C Arachis hypogaea HOM05D007742 ORTHO05D004072 1.3e-20 105.1 165 28.5
CAN.G134.65 Capsicum annuum HOM05D008124 ORTHO05D004072 1.3e-20 105.1 150 34.7
AT3G42860 Arabidopsis thaliana HOM05D008124 ORTHO05D004072 1.7e-20 104.8 134 40.3
AL5G21140 Arabidopsis lyrata HOM05D008124 ORTHO05D004072 2.2e-20 104.4 131 39.7
arahy.Tifrunner.gnm1.ann1.H02ZFL Arachis hypogaea HOM05D007742 ORTHO05D004072 2.2e-20 104.4 165 28.5
Cfa000684 Carpinus fangiana HOM05D008124 ORTHO05D004072 2.9e-20 104.0 157 33.8
THA.LOC104823128 Tarenaya hassleriana HOM05D009880 ORTHO05D004072 2.9e-20 104.0 402 25.6
Zm00001eb059980 Zea mays HOM05D008124 ORTHO05D004072 4.9e-20 103.2 163 32.5
Actinidia37712 Actinidia chinensis HOM05D007742 ORTHO05D004072 6.4e-20 102.8 141 37.6
PGSC0003DMG400027518 Solanum tuberosum HOM05D008124 ORTHO05D004072 6.4e-20 102.8 151 34.4
Thhalv10013799m.g Eutrema salsugineum HOM05D008124 ORTHO05D004072 1.4e-19 101.7 123 41.5
Glyma.19G105400 Glycine max HOM05D007742 ORTHO05D004072 1.9e-19 101.3 165 35.8
Mapoly0141s0028 Marchantia polymorpha HOM05D008124 ORTHO05D004072 1.9e-19 101.3 148 35.8
Sp6g17920 Schrenkiella parvula HOM05D008124 ORTHO05D004072 1.9e-19 101.3 125 42.4
Eucgr.K01332 Eucalyptus grandis HOM05D008124 ORTHO05D004072 3.2e-19 100.5 151 32.5
GSVIVG01018616001 Vitis vinifera HOM05D008124 ORTHO05D004072 3.2e-19 100.5 146 39.0
Aa31LG4G13260 Aethionema arabicum HOM05D008124 ORTHO05D004072 4.2e-19 100.1 168 36.9
CARHR152360 Cardamine hirsuta HOM05D008124 ORTHO05D004072 7.1e-19 99.4 128 40.6
PSO541G0277 Papaver somniferum HOM05D008124 ORTHO05D004072 7.1e-19 99.4 151 35.1
Sopen01g040750 Solanum pennellii HOM05D008124 ORTHO05D004072 9.3e-19 99.0 148 35.1
C09p47180 Brassica napus HOM05D008124 ORTHO05D004072 1.2e-18 98.6 150 37.3
BolC9t57572H Brassica oleracea HOM05D008124 ORTHO05D004072 1.2e-18 98.6 150 37.3
FAN14G4038 Fragaria x ananassa HOM05D000027 ORTHO05D004072 1.2e-18 98.6 161 32.3
Psat3g092040 Pisum sativum HOM05D007742 ORTHO05D004072 1.2e-18 98.6 158 33.5
CsaV3_4G007470 Cucumis sativus L. HOM05D008124 ORTHO05D004072 2.1e-18 97.8 134 35.8
Duzib138G1433 Durio zibethinus HOM05D018961 ORTHO05D004072 2.1e-18 97.8 153 33.3
PGR142G3827 Punica granatum HOM05D007742 ORTHO05D004072 2.1e-18 97.8 149 32.9
Ca_08225_v3 Cicer arietinum L. HOM05D007742 ORTHO05D004072 2.7e-18 97.4 414 23.2
Nn4g26556 Nelumbo nucifera HOM05D008124 ORTHO05D004072 2.7e-18 97.4 157 33.1
Phvul.001G079300 Phaseolus vulgaris HOM05D007742 ORTHO05D004072 2.7e-18 97.4 146 32.9
AL1G65420 Arabidopsis lyrata HOM05D009880 ORTHO05D004072 4.6e-18 96.7 423 24.6
A10p13280 Brassica napus HOM05D008124 ORTHO05D004072 6.0e-18 96.3 148 37.2
BraA10t43425Z Brassica rapa HOM05D008124 ORTHO05D004072 6.0e-18 96.3 148 37.2
Rhsim07G0073400 Rhododendron simsii HOM05D008124 ORTHO05D004072 1.3e-17 95.1 160 35.0
CSS0026315 Camellia sinensis var. sinensis HOM05D007742 ORTHO05D004072 1.7e-17 94.7 152 32.9
THA.LOC104810998 Tarenaya hassleriana HOM05D008124 ORTHO05D004072 2.3e-17 94.4 125 39.2
ClCG07G010840 Citrullus lanatus HOM05D008124 ORTHO05D004072 3.0e-17 94.0 145 33.8
Prupe.3G190200 Prunus persica HOM05D008124 ORTHO05D004072 6.6e-17 92.8 157 31.8
Sed0023600 Sechium edule HOM05D008124 ORTHO05D004072 1.1e-16 92.0 155 32.3
RcHm_v2.0_Chr2g0154211 Rosa chinensis HOM05D008124 ORTHO05D004072 2.5e-16 90.9 171 30.4
FvH4_6g39844 Fragaria vesca HOM05D008124 ORTHO05D004072 3.3e-16 90.5 172 30.2
Sed0004202 Sechium edule HOM05D008124 ORTHO05D004072 4.3e-16 90.1 150 30.7
DCAR_008617 Daucus carota HOM05D007742 ORTHO05D004072 7.3e-16 89.4 149 34.9
Gorai.001G095300 Gossypium raimondii HOM05D018961 ORTHO05D004072 7.3e-16 89.4 138 32.6
MBI02_g36352_MAGBIO Magnolia biondii HOM05D008124 ORTHO05D004072 7.3e-16 89.4 114 40.4
Gohir.A07G082400 Gossypium hirsutum HOM05D018961 ORTHO05D004072 9.6e-16 89.0 138 31.9
Nitab4.5_0002247g0100 Nicotiana tabacum HOM05D008124 ORTHO05D004072 1.6e-15 88.2 132 33.3
Solyc01g097070.4 Solanum lycopersicum HOM05D008124 ORTHO05D004072 2.8e-15 87.4 124 36.3
Gohir.D07G088900 Gossypium hirsutum HOM05D018961 ORTHO05D004072 3.6e-15 87.0 138 31.9
Haze_06124 Corylus avellana HOM05D008124 ORTHO05D004072 4.8e-15 86.7 146 30.8
Gohir.A07G168700 Gossypium hirsutum HOM05D018961 ORTHO05D004072 4.8e-15 86.7 137 33.6
Nitab4.5_0005905g0010 Nicotiana tabacum HOM05D008124 ORTHO05D004072 4.8e-15 86.7 132 33.3
PGR004G0249 Punica granatum HOM05D008124 ORTHO05D004072 4.8e-15 86.7 140 32.1
AT1G54930 Arabidopsis thaliana HOM05D009880 ORTHO05D004072 1.8e-14 84.7 416 22.1
Dinv20269 Davidia involucrata HOM05D008124 ORTHO05D004072 1.8e-14 84.7 121 37.2
SGA_v2.0_scaffold305G47989 Striga asiatica HOM05D007742 ORTHO05D004072 2.4e-14 84.3 103 38.8
Carub.0002s0844 Capsella rubella HOM05D009880 ORTHO05D004072 1.2e-13 82.0 449 23.4
HPP92_017701 Vanilla planifolia HOM05D008124 ORTHO05D004072 1.2e-13 82.0 118 40.7
Sabra16G0201300 Salix brachista HOM05D008124 ORTHO05D004072 2.0e-13 81.3 136 34.6
vmacro18397 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 2.6e-13 80.9 238 29.4
Aa31LG2G11730 Aethionema arabicum HOM05D009880 ORTHO05D004072 4.5e-13 80.1 81 42.0
CDE02G3354 Ceratophyllum demersum HOM05D008124 ORTHO05D004072 1.3e-12 78.6 129 35.7
Hma1.2p1_0868F.1_g230420 Hydrangea macrophylla HOM05D007742 ORTHO05D004072 1.3e-12 78.6 150 30.7
Potri.001G318100 Populus trichocarpa HOM05D008124 ORTHO05D004072 1.7e-12 78.2 118 33.9
Rhsim08G0038200 Rhododendron simsii HOM05D000001 ORTHO05D000003 2.9e-12 77.4 216 30.6
GSVIVG01032966001 Vitis vinifera HOM05D007742 ORTHO05D004072 4.9e-12 76.6 60 53.3
CDE06G0867 Ceratophyllum demersum HOM05D007742 ORTHO05D004072 6.4e-12 76.3 84 44.0
Medtr4g082160 Medicago truncatula HOM05D007742 ORTHO05D004072 8.4e-12 75.9 101 35.6
Lj7A618T68 Lonicera japonica HOM05D007742 ORTHO05D004072 1.1e-11 75.5 186 31.7
Manes.09G074700 Manihot esculenta HOM05D008124 ORTHO05D004072 1.1e-11 75.5 128 32.8
Peaxi162Scf00647g00014 Petunia axillaris HOM05D008124 ORTHO05D004072 3.2e-11 73.9 99 37.4
FAN02G4088 Fragaria x ananassa HOM05D008124 ORTHO05D004072 4.2e-11 73.6 119 32.8
Migut.A00628 Erythranthe guttata HOM05D007742 ORTHO05D004072 9.3e-11 72.4 230 26.1
vmacro18395 Vaccinium macrocarpon HOM05D007742 ORTHO05D004072 9.3e-11 72.4 142 33.1
Lj7P618T64 Lonicera japonica HOM05D007742 ORTHO05D004072 1.0e-09 68.9 144 31.9
Peaxi162Scf00420g00831 Petunia axillaris HOM05D007742 ORTHO05D004072 1.3e-09 68.6 121 35.5
TAR627G0754 Trochodendron aralioides HOM05D008124 ORTHO05D004072 1.3e-09 68.6 91 37.4
Dinv12439 Davidia involucrata HOM05D007742 ORTHO05D004072 2.3e-09 67.8 53 58.5
MBI11_g02483_MAGBIO Magnolia biondii HOM05D056835 ORTHO05D004072 3.0e-09 67.4 45 60.0
MD17G1125500 Malus domestica HOM05D008124 ORTHO05D004072 3.0e-09 67.4 50 52.0
AUR62017481 Chenopodium quinoa HOM05D067763 ORTHO05D004072 3.9e-09 67.0 289 25.6
PSO170G6446 Papaver somniferum HOM05D008124 ORTHO05D004072 6.7e-09 66.2 109 33.0
Rhsim04G0137500 Rhododendron simsii HOM05D007742 ORTHO05D010160 2.5e-08 64.3 133 33.1
AUR62015176 Chenopodium quinoa HOM05D008124 ORTHO05D004072 3.3e-08 63.9 94 38.3
PGSC0003DMG400020234 Solanum tuberosum HOM05D007742 ORTHO05D004072 3.3e-08 63.9 166 30.7
VMungo0464G0864 Vigna mungo HOM05D007742 ORTHO05D004072 3.3e-08 63.9 137 32.1
QL02p069122 Quercus lobata HOM05D007742 ORTHO05D004072 9.6e-08 62.4 150 27.3
AUR62017629 Chenopodium quinoa HOM05D008124 ORTHO05D004072 2.8e-07 60.8 90 37.8
BolC3t13228H Brassica oleracea HOM05D009880 ORTHO05D004072 8.1e-07 59.3 93 34.4
EL10Ac9g22884 Beta vulgaris HOM05D008124 ORTHO05D004072 1.1e-06 58.9 81 34.6
TWI60G0051 Tripterygium wilfordii HOM05D008124 ORTHO05D004072 1.8e-06 58.2 58 37.9
ATR0582G234 Amborella trichopoda HOM05D007742 ORTHO05D004072 2.4e-06 57.8 96 34.4
AagrBONN_evm.TU.Sc2ySwM_228.5614 Anthoceros agrestis HOM05D008124 ORTHO05D004072 2.4e-06 57.8 85 30.6


User provided reference genes

Program Settings