Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0007430 Simmondsia chinensis HOM05D003504 ORTHO05D004006 2.6e-294 1014.6 500 100.0
Sc15g0007400 Simmondsia chinensis HOM05D003504 ORTHO05D004006 8.2e-256 886.7 443 99.8
Hund01269 Selenicereus undatus HOM05D003504 ORTHO05D004006 6.8e-194 681.0 459 74.3
GSVIVG01014992001 Vitis vinifera HOM05D003504 ORTHO05D004006 1.6e-187 659.8 460 72.4
EL10Ac7g17310 Beta vulgaris HOM05D003504 ORTHO05D004006 2.3e-186 656.0 455 72.7
Ah.15g092010 Amaranthus hybridus HOM05D003504 ORTHO05D004006 2.9e-184 649.0 447 72.9
Actinidia04335 Actinidia chinensis HOM05D003504 ORTHO05D004006 4.6e-182 641.7 461 71.4
Dinv25490 Davidia involucrata HOM05D003504 ORTHO05D004006 5.2e-178 628.2 460 69.6
Dinv42441 Davidia involucrata HOM05D003504 ORTHO05D004006 5.8e-177 624.8 450 70.4
Ciclev10010893m.g Citrus clementina HOM05D003504 ORTHO05D004006 1.4e-175 620.2 454 70.7
Manes.17G018400 Manihot esculenta HOM05D003504 ORTHO05D004006 1.9e-175 619.8 461 68.8
AUR62034357 Chenopodium quinoa HOM05D003504 ORTHO05D004006 1.6e-174 616.7 424 73.3
Potri.011G024000 Populus trichocarpa HOM05D003504 ORTHO05D004006 2.7e-174 615.9 464 67.7
AUR62022352 Chenopodium quinoa HOM05D003504 ORTHO05D004006 7.8e-174 614.4 425 73.2
COL.COLO4_11259 Corchorus olitorius HOM05D003504 ORTHO05D004006 1.0e-173 614.0 453 70.9
MBI19_g24061_MAGBIO Magnolia biondii HOM05D003504 ORTHO05D004006 1.7e-173 613.2 435 71.7
Duzib251G0447 Durio zibethinus HOM05D003504 ORTHO05D004006 5.1e-173 611.7 449 69.7
Gohir.A12G174251 Gossypium hirsutum HOM05D003504 ORTHO05D004006 1.1e-172 610.5 449 69.0
TWI60G1460 Tripterygium wilfordii HOM05D003504 ORTHO05D004006 1.1e-172 610.5 452 68.4
Gorai.008G189300 Gossypium raimondii HOM05D003504 ORTHO05D004006 9.6e-172 607.4 449 68.6
Thecc.02G366300 Theobroma cacao HOM05D003504 ORTHO05D004006 9.6e-172 607.4 445 70.1
QL04p084696 Quercus lobata HOM05D003504 ORTHO05D004006 2.1e-171 606.3 436 71.3
Lj3C843G5 Lonicera japonica HOM05D003504 ORTHO05D004006 2.8e-171 605.9 430 69.5
PGR044G0024 Punica granatum HOM05D003504 ORTHO05D004006 1.8e-170 603.2 456 67.3
Gohir.D12G176932 Gossypium hirsutum HOM05D003504 ORTHO05D004006 2.4e-170 602.8 449 68.4
Cfa019400 Carpinus fangiana HOM05D003504 ORTHO05D004006 1.3e-168 597.0 433 71.1
CiPaw.11G060700 Carya illinoinensis HOM05D003504 ORTHO05D004006 2.2e-168 596.3 438 69.6
Rhsim09G0069300 Rhododendron simsii HOM05D003504 ORTHO05D004006 6.4e-168 594.7 433 70.4
CSS0042974 Camellia sinensis var. sinensis HOM05D003504 ORTHO05D004006 8.4e-168 594.3 426 71.8
ECA246G2710 Erigeron canadensis HOM05D003504 ORTHO05D004006 1.9e-167 593.2 447 68.0
Lsat_1_v5_gn_3_34601 Lactuca sativa HOM05D003504 ORTHO05D004006 3.2e-167 592.4 443 68.6
Sopen08g006320 Solanum pennellii HOM05D003504 ORTHO05D004006 4.6e-166 588.6 456 66.4
Nn1g07188 Nelumbo nucifera HOM05D003504 ORTHO05D004006 3.0e-165 585.9 462 66.5
Atru.chr8.1046 Acer truncatum HOM05D003504 ORTHO05D004006 8.7e-165 584.3 379 78.1
PSO541G5947 Papaver somniferum HOM05D003504 ORTHO05D004006 1.9e-164 583.2 460 65.9
CAN.G68.16 Capsicum annuum HOM05D003504 ORTHO05D004006 7.3e-164 581.3 454 66.1
Prupe.4G132800 Prunus persica HOM05D003504 ORTHO05D004006 7.3e-164 581.3 441 68.0
Cc03_g16320 Coffea canephora HOM05D003504 ORTHO05D004006 2.1e-163 579.7 460 65.9
PSO675G8441 Papaver somniferum HOM05D003504 ORTHO05D004006 2.1e-163 579.7 460 65.9
DCAR_001249 Daucus carota HOM05D003504 ORTHO05D004006 4.0e-162 575.5 459 65.6
HanXRQChr06g0171691 Helianthus annuus HOM05D003504 ORTHO05D004006 6.9e-162 574.7 404 71.3
Nitab4.5_0000348g0160 Nicotiana tabacum HOM05D003504 ORTHO05D004006 6.9e-162 574.7 464 64.9
MD05G1229900 Malus domestica HOM05D003504 ORTHO05D004006 1.5e-161 573.5 431 68.9
MD10G1209700 Malus domestica HOM05D003504 ORTHO05D004006 2.0e-161 573.2 441 67.8
ATR0068G076 Amborella trichopoda HOM05D003504 ORTHO05D004006 4.5e-161 572.0 462 65.2
CANSAT80G2607 Cannabis sativa HOM05D003504 ORTHO05D004006 5.8e-161 571.6 442 67.2
Nitab4.5_0001070g0110 Nicotiana tabacum HOM05D003504 ORTHO05D004006 7.6e-161 571.2 478 63.0
CsaV3_7G022910 Cucumis sativus L. HOM05D003504 ORTHO05D004006 9.9e-161 570.9 440 67.3
MELO3C012607.2 Cucumis melo HOM05D003504 ORTHO05D004006 1.7e-160 570.1 497 61.6
FAN16G2874 Fragaria x ananassa HOM05D003504 ORTHO05D004006 3.2e-159 565.8 440 67.3
TPR.G9397 Trifolium pratense HOM05D003504 ORTHO05D004006 1.2e-158 563.9 440 66.6
FAN11G1602 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.6e-158 563.5 440 67.0
FvH4_3g14770 Fragaria vesca HOM05D003504 ORTHO05D004006 2.7e-158 562.8 440 67.0
Lalb_Chr19g0133201 Lupinus albus HOM05D003504 ORTHO05D004006 4.6e-158 562.0 440 66.4
Peaxi162Scf01205g00192 Petunia axillaris HOM05D003504 ORTHO05D004006 8.7e-157 557.8 428 68.2
arahy.Tifrunner.gnm1.ann1.S8BAEK Arachis hypogaea HOM05D003504 ORTHO05D004006 1.5e-156 557.0 441 64.9
Aqoxy3G00583 Aquilegia oxysepala HOM05D003504 ORTHO05D004006 1.9e-156 556.6 449 65.3
arahy.Tifrunner.gnm1.ann1.G058EZ Arachis hypogaea HOM05D003504 ORTHO05D004006 1.9e-156 556.6 441 64.6
Lj3g0024547 Lotus japonicus HOM05D003504 ORTHO05D004006 2.5e-156 556.2 440 65.5
Medtr8g056900 Medicago truncatula HOM05D003504 ORTHO05D004006 7.4e-156 554.7 440 65.5
VMungo1127G1360 Vigna mungo HOM05D003504 ORTHO05D004006 4.8e-155 552.0 440 65.2
CANSAT80G1492 Cannabis sativa HOM05D003504 ORTHO05D004006 6.2e-155 551.6 443 65.2
Glyma.08G148300 Glycine max HOM05D003504 ORTHO05D004006 6.2e-155 551.6 437 65.2
HanXRQChr17g0541121 Helianthus annuus HOM05D003504 ORTHO05D004006 1.4e-154 550.4 397 70.0
Phvul.011G177600 Phaseolus vulgaris HOM05D003504 ORTHO05D004006 4.0e-154 548.9 436 65.1
Glyma.15G212800 Glycine max HOM05D003504 ORTHO05D004006 1.2e-153 547.4 437 65.0
Migut.H02557 Erythranthe guttata HOM05D003504 ORTHO05D004006 4.5e-153 545.4 453 62.5
Aa31LG2G12370 Aethionema arabicum HOM05D003504 ORTHO05D004006 1.3e-152 543.9 464 62.5
MSTRG.21739 Avicennia marina HOM05D003504 ORTHO05D004006 1.3e-152 543.9 461 61.2
CARHR222710 Cardamine hirsuta HOM05D003504 ORTHO05D004006 6.4e-152 541.6 450 63.8
SEGI_32993 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 6.4e-152 541.6 446 62.8
SEGI_34400 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 6.4e-152 541.6 446 62.8
Thhalv10024194m.g Eutrema salsugineum HOM05D003504 ORTHO05D004006 1.4e-151 540.4 460 62.0
Lalb_Chr01g0007231 Lupinus albus HOM05D003504 ORTHO05D004006 7.1e-151 538.1 439 63.8
Carub.0007s2520 Capsella rubella HOM05D003504 ORTHO05D004006 9.3e-151 537.7 436 64.9
AT4G16340 Arabidopsis thaliana HOM05D003504 ORTHO05D004006 3.5e-150 535.8 436 63.5
Sp7g14850 Schrenkiella parvula HOM05D003504 ORTHO05D004006 4.6e-150 535.4 445 63.1
ClCG09G022710 Citrullus lanatus HOM05D003504 ORTHO05D004006 7.9e-150 534.6 441 63.9
AL7G38710 Arabidopsis lyrata HOM05D003504 ORTHO05D004006 1.0e-149 534.3 436 63.5
THA.LOC104823022 Tarenaya hassleriana HOM05D003504 ORTHO05D004006 1.8e-149 533.5 469 60.8
A01p21260 Brassica napus HOM05D003504 ORTHO05D004006 1.5e-145 520.4 464 59.7
Zm00001eb395310 Zea mays HOM05D003504 ORTHO05D004006 2.0e-145 520.0 406 65.3
Zm00001eb015660 Zea mays HOM05D003504 ORTHO05D004006 3.4e-145 519.2 404 65.6
BcaC09g50329 Brassica carinata HOM05D003504 ORTHO05D004006 4.5e-145 518.8 458 60.3
SGA_v2.0_scaffold161G37832 Striga asiatica HOM05D003504 ORTHO05D004006 6.5e-144 515.0 506 55.9
Oeu038381.1 Olea europaea HOM05D003504 ORTHO05D004006 8.4e-144 514.6 468 59.2
BcaNung00207 Brassica carinata HOM05D003504 ORTHO05D004006 1.1e-143 514.2 452 60.6
Haze_07798 Corylus avellana HOM05D003504 ORTHO05D004006 1.4e-143 513.8 433 63.7
Sabra11G0015000 Salix brachista HOM05D003504 ORTHO05D004006 1.9e-143 513.5 464 59.9
Sed0010866 Sechium edule HOM05D003504 ORTHO05D004006 2.7e-142 509.6 441 60.8
Ca_24186_v3 Cicer arietinum L. HOM05D003504 ORTHO05D004006 2.3e-141 506.5 440 60.9
Eucgr.K02348 Eucalyptus grandis HOM05D003504 ORTHO05D004006 1.1e-140 504.2 371 71.4
BolC1t02600H Brassica oleracea HOM05D003504 ORTHO05D004006 4.3e-140 502.3 429 62.5
BraA01t02033Z Brassica rapa HOM05D003504 ORTHO05D004006 1.3e-139 500.7 429 62.2
CDE09G0759 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 2.2e-139 500.0 445 60.4
HPP92_006681 Vanilla planifolia HOM05D003504 ORTHO05D004006 3.7e-139 499.2 408 61.0
C01p26570 Brassica napus HOM05D003504 ORTHO05D004006 1.2e-134 484.2 433 60.3
FAN21G0765 Fragaria x ananassa HOM05D003504 ORTHO05D004006 1.4e-133 480.7 440 59.3
FAN25G3182 Fragaria x ananassa HOM05D003504 ORTHO05D004006 2.3e-133 479.9 532 52.4
vmacro15989 Vaccinium macrocarpon HOM05D003504 ORTHO05D004006 5.1e-133 478.8 379 67.8
SalBow1G2205 Salvia bowleyana HOM05D003504 ORTHO05D004006 8.8e-125 451.4 435 56.3
TAR376G1097 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.1e-124 451.1 365 66.6
Solyc08g016070.3 Solanum lycopersicum HOM05D003504 ORTHO05D004006 2.0e-124 450.3 376 64.1
CDE08G0995 Ceratophyllum demersum HOM05D003504 ORTHO05D004006 2.1e-118 430.3 414 57.7
Mapoly0021s0072 Marchantia polymorpha HOM05D003504 ORTHO05D004006 2.2e-115 420.2 420 53.3
AagrBONN_evm.TU.Sc2ySwM_228.1501 Anthoceros agrestis HOM05D003504 ORTHO05D004006 2.4e-114 416.8 405 54.1
Pp3c9_15160 Physcomitrium patens HOM05D003504 ORTHO05D004006 1.5e-108 397.5 442 49.8
Pp3c3_15370 Physcomitrium patens HOM05D003504 ORTHO05D004006 3.4e-108 396.4 482 45.9
Pp3c4_25310 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.7e-108 395.6 469 47.1
Pp3c15_8680 Physcomitrium patens HOM05D003504 ORTHO05D004006 7.0e-106 388.7 413 50.4
Pp3c10_16640 Physcomitrium patens HOM05D003504 ORTHO05D004006 5.5e-103 379.0 446 45.5
Pp3c1_25190 Physcomitrium patens HOM05D003504 ORTHO05D004006 2.3e-101 373.6 434 47.0
Psat4g137560 Pisum sativum HOM05D003504 ORTHO05D004006 2.0e-100 370.5 439 48.7
Lj6C705G6 Lonicera japonica HOM05D003504 ORTHO05D004006 4.5e-97 359.4 333 57.4
SMO011G0025 Selaginella moellendorffii HOM05D003504 ORTHO05D004006 2.8e-94 350.1 367 51.2
unitig_60.g25589 Utricularia gibba HOM05D003504 ORTHO05D004006 1.1e-82 311.6 374 49.2
Zm00001eb391790 Zea mays HOM05D003504 ORTHO05D004006 6.0e-65 252.7 226 58.8
RcHm_v2.0_Chr5g0024301 Rosa chinensis HOM05D003504 ORTHO05D004006 5.4e-58 229.6 199 64.8
RcHm_v2.0_Chr5g0024291 Rosa chinensis HOM05D003504 ORTHO05D004006 8.7e-56 222.2 167 65.3
TAR623G0212 Trochodendron aralioides HOM05D003504 ORTHO05D004006 1.5e-55 221.5 201 60.2
Zm00001eb110210 Zea mays HOM05D003504 ORTHO05D004006 7.9e-49 199.1 133 75.9
CBR_g22314 Chara braunii HOM05D003504 ORTHO05D004006 2.6e-44 184.1 218 47.2
Zm00001eb265730 Zea mays HOM05D003504 ORTHO05D004006 1.3e-40 171.8 216 44.9
Zm00001eb113250 Zea mays HOM05D003504 ORTHO05D004006 1.4e-37 161.8 115 70.4
Zm00001eb145990 Zea mays HOM05D003504 ORTHO05D004006 3.4e-36 157.1 134 61.2
Zm00001eb265700 Zea mays HOM05D003504 ORTHO05D004006 2.1e-33 147.9 141 57.4
Zm00001eb389000 Zea mays HOM05D001423 ORTHO05D004006 2.7e-33 147.5 155 54.8
Psat0s1032g0040 Pisum sativum HOM05D003504 ORTHO05D004006 6.7e-32 142.9 101 66.3
Cpa.g.sc34.44 Carica papaya HOM05D003504 ORTHO05D004006 4.8e-30 136.7 86 83.7
SHI02263 Sapria himalayana HOM05D003504 ORTHO05D004006 5.1e-24 116.7 101 63.4
SHI02262 Sapria himalayana HOM05D003504 ORTHO05D004006 1.3e-22 112.1 82 67.1
CBR_g22316 Chara braunii HOM05D003504 ORTHO05D004006 5.0e-19 100.1 141 37.6
Zm00001eb412430 Zea mays HOM05D003504 ORTHO05D004006 2.1e-17 94.7 87 59.8
Zm00001eb021100 Zea mays HOM05D002913 ORTHO05D026003 3.0e-16 90.9 57 77.2
Zm00001eb373750 Zea mays HOM05D009386 ORTHO05D011419 3.9e-16 90.5 57 77.2
Zm00001eb292470 Zea mays HOM05D001423 ORTHO05D000709 9.1e-13 79.3 128 44.5
ClCG03G013860 Citrullus lanatus HOM05D003504 ORTHO05D004006 2.2e-11 74.7 72 51.4
Zm00001eb016900 Zea mays HOM05D009386 ORTHO05D011419 5.0e-11 73.6 58 62.1
Zm00001eb156390 Zea mays HOM05D009386 ORTHO05D011419 1.4e-10 72.0 58 60.3
SHI02260 Sapria himalayana HOM05D003504 ORTHO05D004006 1.6e-09 68.6 50 58.0
Cpa.g.sc3151.1 Carica papaya HOM05D003504 ORTHO05D004006 1.8e-08 65.1 96 42.7
SHI02261 Sapria himalayana HOM05D003504 ORTHO05D004006 7.4e-07 59.7 71 43.7
SEGI_08102 Sequoiadendron giganteum HOM05D017310 ORTHO05D004006 1.3e-06 58.9 41 68.3
SEGI_26038 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 1.3e-06 58.9 41 68.3
SEGI_22890 Sequoiadendron giganteum HOM05D003504 ORTHO05D004006 6.3e-06 56.6 41 65.9


User provided reference genes

Program Settings