Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 0.0e+00 1582.4 815 100.0
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 2.6e-304 1048.5 784 68.6
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 4.2e-302 1041.2 818 66.3
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 2.0e-296 1022.3 813 66.8
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 7.7e-296 1020.4 816 65.2
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.2e-293 1013.1 822 64.2
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 1.2e-293 1013.1 825 64.2
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 1.2e-291 1006.5 805 66.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 5.7e-291 1004.2 818 64.1
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 1.4e-289 999.6 793 66.8
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 5.4e-289 997.7 804 66.2
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 2.0e-288 995.7 813 64.7
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 4.5e-288 994.6 797 65.2
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.9e-288 994.2 764 67.4
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 5.9e-288 994.2 818 64.3
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 5.0e-287 991.1 794 66.4
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 5.0e-287 991.1 838 63.1
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 6.1e-285 984.2 800 64.2
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 3.0e-284 981.9 764 67.0
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 4.4e-283 978.0 815 64.2
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 9.8e-283 976.9 815 63.9
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 1.7e-282 976.1 816 63.1
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 3.7e-282 974.9 823 63.3
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 5.4e-281 971.1 796 65.6
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.0e-280 969.1 799 63.6
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 8.6e-279 963.8 798 64.2
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 2.6e-275 952.2 798 63.7
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 5.8e-275 951.0 794 63.6
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 5.8e-275 951.0 795 62.9
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 9.8e-275 950.3 798 63.7
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 1.3e-274 949.9 821 62.0
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 2.9e-274 948.7 792 61.7
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 1.1e-273 946.8 820 60.1
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 1.4e-273 946.4 820 62.2
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 2.4e-273 945.7 800 62.0
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 3.2e-273 945.3 821 61.6
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 4.1e-273 944.9 820 59.9
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 5.4e-273 944.5 820 60.0
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 2.0e-272 942.6 832 61.3
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 5.0e-271 937.9 824 60.0
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 8.6e-271 937.2 809 61.8
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.5e-270 936.4 818 61.6
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 1.6e-269 932.9 800 61.9
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.1e-268 930.2 826 62.1
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 5.2e-268 927.9 818 61.4
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.4e-267 925.2 818 61.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.3e-266 923.3 800 60.8
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 1.3e-266 923.3 800 61.2
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.7e-266 922.9 818 61.2
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.7e-266 922.9 854 60.8
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 2.2e-266 922.5 819 61.1
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.4e-265 919.8 800 60.8
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 3.2e-265 918.7 867 58.4
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 4.6e-264 914.8 820 60.1
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 7.8e-264 914.1 815 61.0
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 3.0e-263 912.1 826 59.7
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 5.1e-263 911.4 815 60.2
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 4.4e-259 898.3 823 59.7
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 1.7e-258 896.3 796 60.8
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 3.7e-258 895.2 801 58.9
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 4.9e-258 894.8 819 60.1
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 3.2e-257 892.1 813 59.5
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 5.4e-257 891.3 729 65.0
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 6.0e-256 887.9 794 59.4
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 7.8e-256 887.5 796 59.3
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 2.3e-255 885.9 821 59.9
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 8.6e-255 884.0 790 60.4
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 1.5e-254 883.2 815 58.9
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 4.3e-254 881.7 808 59.3
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 7.3e-254 880.9 797 59.0
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 1.2e-253 880.2 821 59.7
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 9.9e-251 870.5 809 57.5
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 1.3e-250 870.2 798 58.4
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 4.6e-248 861.7 823 58.2
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 1.5e-246 856.7 801 58.6
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 5.6e-246 854.7 823 57.6
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 2.8e-245 852.4 809 57.1
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 1.8e-244 849.7 778 58.6
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 6.9e-244 847.8 812 56.8
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.0e-243 846.3 802 56.6
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 3.4e-243 845.5 817 57.0
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 5.8e-243 844.7 814 56.0
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 5.8e-243 844.7 802 57.6
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 2.9e-242 842.4 810 57.4
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 2.9e-242 842.4 802 57.2
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 3.8e-242 842.0 807 56.1
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 2.4e-241 839.3 810 57.2
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 2.4e-241 839.3 810 57.2
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 2.4e-241 839.3 810 57.2
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 3.2e-241 839.0 817 55.9
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 5.4e-241 838.2 816 55.9
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 9.3e-241 837.4 809 56.7
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 2.1e-237 826.2 829 54.9
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 2.4e-220 769.6 804 55.0
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 3.2e-217 759.2 650 63.2
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 8.8e-207 724.5 820 52.9
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.6e-200 703.7 655 57.9
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.0e-199 701.0 655 57.7
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 5.3e-188 662.1 645 56.1
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 1.5e-182 644.0 483 71.8
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 2.2e-178 630.2 457 70.7
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 7.2e-169 598.6 569 55.5
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 1.2e-166 591.3 518 61.0
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 2.6e-166 590.1 476 65.3
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 1.7e-165 587.4 850 43.9
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 2.3e-162 577.0 462 65.8
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 5.8e-158 562.4 465 63.7
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 6.4e-157 558.9 465 63.7
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 5.4e-156 555.8 480 61.0
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.6e-155 554.3 493 60.6
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 1.3e-154 551.2 466 62.2
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 1.3e-154 551.2 466 62.2
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 4.7e-152 542.7 470 62.6
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.3e-149 534.6 463 62.0
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 7.8e-147 525.4 740 44.5
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 7.3e-145 518.8 480 60.4
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.3e-143 513.8 458 61.6
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 1.5e-142 511.1 468 59.2
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 4.1e-140 503.1 459 59.7
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 4.6e-139 499.6 453 59.2
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 6.0e-139 499.2 468 58.3
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 5.6e-137 492.7 410 63.4
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 4.7e-136 489.6 459 57.7
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.7e-133 481.1 462 58.7
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.4e-132 477.2 459 58.4
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 3.3e-129 466.8 701 42.9
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 3.6e-128 463.4 752 41.0
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.4e-127 460.7 754 41.9
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 2.4e-127 460.7 457 55.1
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 3.1e-127 460.3 448 55.4
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 4.4e-126 456.4 710 42.4
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 9.9e-126 455.3 452 55.3
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 2.2e-125 454.1 452 54.9
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 3.8e-125 453.4 452 54.9
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 3.3e-121 440.3 471 54.6
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 6.2e-112 409.5 455 51.6
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 4.0e-111 406.8 299 68.9
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.8e-95 354.8 660 39.2
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 3.4e-94 350.5 312 58.7
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 8.5e-93 345.9 462 43.7
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.2e-86 325.5 280 65.0
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.4e-79 301.2 231 69.7
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 4.0e-74 283.9 197 75.1
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 1.9e-60 238.4 362 40.1
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 5.7e-57 226.9 796 28.6
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 8.6e-53 213.0 146 71.2
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.6e-53 213.0 147 74.1
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 8.6e-53 213.0 147 74.1
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 6.8e-50 203.4 423 34.3
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 7.8e-46 189.9 140 66.4
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 3.3e-44 184.5 360 37.8
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 1.2e-43 182.6 140 64.3
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.2e-31 139.8 90 70.0
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 9.9e-17 93.2 87 62.1
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.2e-16 92.0 156 37.2
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 2.2e-16 92.0 156 36.5
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 4.9e-16 90.9 70 60.0
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.9e-13 81.3 86 52.3
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 6.9e-10 70.5 54 59.3


User provided reference genes

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