Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0004820 Simmondsia chinensis HOM05D005168 ORTHO05D006358 5.4e-71 270.8 127 100.0
Hund09202 Selenicereus undatus HOM05D005168 ORTHO05D006358 1.3e-61 239.6 127 85.8
EL10Ac1g02165 Beta vulgaris HOM05D005168 ORTHO05D006358 1.5e-60 236.1 127 84.3
TAR622G0958 Trochodendron aralioides HOM05D005168 ORTHO05D006358 1.9e-39 166.0 127 59.1
PSO541G4324 Papaver somniferum HOM05D005168 ORTHO05D006358 1.2e-38 163.3 127 60.6
PSO675G5410 Papaver somniferum HOM05D005168 ORTHO05D006358 1.2e-38 163.3 127 60.6
Nn3g19859 Nelumbo nucifera HOM05D005168 ORTHO05D006358 1.8e-37 159.5 127 59.1
CDE11G0347 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 3.3e-36 155.2 125 56.8
GSVIVG01009945001 Vitis vinifera HOM05D005168 ORTHO05D006358 3.3e-36 155.2 127 55.1
AUR62041475 Chenopodium quinoa HOM05D005168 ORTHO05D006358 1.3e-32 143.3 74 85.1
Ca_00384_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 3.2e-31 138.7 125 52.8
Ah.01g021000 Amaranthus hybridus HOM05D005168 ORTHO05D006358 4.2e-31 138.3 67 91.0
Psat5g045240 Pisum sativum HOM05D005168 ORTHO05D006358 1.2e-30 136.7 125 52.0
AUR62040557 Chenopodium quinoa HOM05D005168 ORTHO05D006358 2.7e-30 135.6 67 88.1
SGA_v2.0_scaffold47G17500 Striga asiatica HOM05D005168 ORTHO05D006358 2.7e-30 135.6 127 54.3
CSS0038486 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 6.0e-30 134.4 129 50.4
Medtr3g102420 Medicago truncatula HOM05D005168 ORTHO05D006358 6.0e-30 134.4 123 52.8
TWI56G1449 Tripterygium wilfordii HOM05D005168 ORTHO05D006358 6.0e-30 134.4 125 51.2
SalBow8G1113 Salvia bowleyana HOM05D005168 ORTHO05D006358 7.9e-30 134.0 126 53.2
Lj1g0018211 Lotus japonicus HOM05D005168 ORTHO05D006358 1.0e-29 133.7 125 52.0
SGA_v2.0_scaffold19G08553 Striga asiatica HOM05D005168 ORTHO05D006358 1.3e-29 133.3 127 53.5
Lalb_Chr11g0067001 Lupinus albus HOM05D005168 ORTHO05D006358 2.3e-29 132.5 123 53.7
Hma1.2p1_0733F.1_g210170 Hydrangea macrophylla HOM05D005168 ORTHO05D006358 1.1e-28 130.2 128 50.8
MSTRG.22344 Avicennia marina HOM05D005168 ORTHO05D006358 1.9e-28 129.4 126 52.4
Manes.14G063600 Manihot esculenta HOM05D005168 ORTHO05D006358 1.9e-28 129.4 125 48.8
CSS0004439 Camellia sinensis var. sinensis HOM05D005168 ORTHO05D006358 7.4e-28 127.5 131 48.9
Nitab4.5_0000337g0010 Nicotiana tabacum HOM05D005168 ORTHO05D006358 9.6e-28 127.1 127 50.4
Nitab4.5_0003251g0060 Nicotiana tabacum HOM05D005168 ORTHO05D006358 9.6e-28 127.1 127 50.4
MELO3C011355.2 Cucumis melo HOM05D005168 ORTHO05D006358 1.6e-27 126.3 125 48.8
vmacro04368 Vaccinium macrocarpon HOM05D005168 ORTHO05D006358 2.1e-27 125.9 130 49.2
Os03g0711700 Oryza sativa ssp. japonica HOM05D005168 ORTHO05D006358 3.7e-27 125.2 128 46.9
Solyc04g054510.4 Solanum lycopersicum HOM05D005168 ORTHO05D006358 3.7e-27 125.2 127 48.0
PGSC0003DMG400022038 Solanum tuberosum HOM05D005168 ORTHO05D006358 3.7e-27 125.2 127 48.0
Glyma.03G178900 Glycine max HOM05D005168 ORTHO05D006358 4.8e-27 124.8 120 50.0
MD08G1010500 Malus domestica HOM05D005168 ORTHO05D006358 1.1e-26 123.6 126 49.2
Actinidia37940 Actinidia chinensis HOM05D005168 ORTHO05D006358 1.4e-26 123.2 129 48.1
CsaV3_2G024260 Cucumis sativus L. HOM05D005168 ORTHO05D006358 1.4e-26 123.2 125 48.0
Sed0007604 Sechium edule HOM05D005168 ORTHO05D006358 1.4e-26 123.2 125 47.2
CiPaw.07G147200 Carya illinoinensis HOM05D005168 ORTHO05D006358 1.8e-26 122.9 125 48.0
arahy.Tifrunner.gnm1.ann1.TKX6L5 Arachis hypogaea HOM05D005168 ORTHO05D006358 4.0e-26 121.7 126 49.2
Aa31LG4G6030 Aethionema arabicum HOM05D005168 ORTHO05D006358 6.9e-26 120.9 124 50.0
arahy.Tifrunner.gnm1.ann1.GU7A1M Arachis hypogaea HOM05D005168 ORTHO05D006358 6.9e-26 120.9 126 49.2
Peaxi162Scf00553g00216 Petunia axillaris HOM05D005168 ORTHO05D006358 6.9e-26 120.9 127 48.0
Prupe.6G147400 Prunus persica HOM05D005168 ORTHO05D006358 6.9e-26 120.9 126 49.2
QL01p031168 Quercus lobata HOM05D005168 ORTHO05D006358 6.9e-26 120.9 125 45.6
CAN.G727.4 Capsicum annuum HOM05D005168 ORTHO05D006358 9.0e-26 120.6 127 47.2
Phvul.001G175600 Phaseolus vulgaris HOM05D005168 ORTHO05D006358 1.2e-25 120.2 120 50.0
PGR031G0142 Punica granatum HOM05D005168 ORTHO05D006358 1.2e-25 120.2 125 48.0
AT3G25940 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 1.5e-25 119.8 124 46.0
THA.LOC104825467 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.5e-25 119.8 116 50.0
CANSAT11G0916 Cannabis sativa HOM05D005168 ORTHO05D006358 2.0e-25 119.4 125 44.0
Migut.N03173 Erythranthe guttata HOM05D005168 ORTHO05D006358 2.6e-25 119.0 126 48.4
THA.LOC104825468 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 2.6e-25 119.0 116 49.1
BcaB03g14336 Brassica carinata HOM05D005168 ORTHO05D006358 3.4e-25 118.6 124 48.4
BcaB03g14344 Brassica carinata HOM05D005168 ORTHO05D006358 3.4e-25 118.6 124 48.4
A07p16030 Brassica napus HOM05D005168 ORTHO05D006358 3.4e-25 118.6 124 48.4
C07p23400 Brassica napus HOM05D005168 ORTHO05D006358 3.4e-25 118.6 124 48.4
BolC7t42872H Brassica oleracea HOM05D005168 ORTHO05D006358 3.4e-25 118.6 124 48.4
BraA07t29331Z Brassica rapa HOM05D005168 ORTHO05D006358 3.4e-25 118.6 124 48.4
Cc10_g01450 Coffea canephora HOM05D005168 ORTHO05D006358 3.4e-25 118.6 124 46.8
SEGI_04309 Sequoiadendron giganteum HOM05D005168 ORTHO05D006358 3.4e-25 118.6 122 49.2
AL5G14600 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 4.5e-25 118.2 124 47.6
Potri.013G015000 Populus trichocarpa HOM05D005168 ORTHO05D006358 4.5e-25 118.2 125 44.0
Cfa012889 Carpinus fangiana HOM05D005168 ORTHO05D006358 5.8e-25 117.9 125 46.4
Thhalv10019327m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 7.6e-25 117.5 124 48.4
DCAR_015742 Daucus carota HOM05D005168 ORTHO05D006358 1.0e-24 117.1 127 47.2
VMungo1080G1160 Vigna mungo HOM05D005168 ORTHO05D006358 1.0e-24 117.1 123 48.8
Sp1g17830 Schrenkiella parvula HOM05D005168 ORTHO05D006358 1.3e-24 116.7 124 47.6
THA.LOC104811420 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-24 116.7 116 48.3
Rhsim07G0250400 Rhododendron simsii HOM05D005168 ORTHO05D006358 1.7e-24 116.3 127 47.2
Atru.chr1.3654 Acer truncatum HOM05D005168 ORTHO05D006358 2.2e-24 115.9 125 48.8
BcaB07g32021 Brassica carinata HOM05D005168 ORTHO05D006358 2.2e-24 115.9 124 46.8
Cpa.g.sc58.102 Carica papaya HOM05D005168 ORTHO05D006358 2.2e-24 115.9 117 46.2
Haze_17776 Corylus avellana HOM05D005168 ORTHO05D006358 2.2e-24 115.9 125 45.6
Thhalv10009132m.g Eutrema salsugineum HOM05D005168 ORTHO05D006358 2.2e-24 115.9 124 47.6
Haze_22662 Corylus avellana HOM05D005168 ORTHO05D006358 2.9e-24 115.5 125 45.6
Aqoxy2G01931 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 4.9e-24 114.8 131 45.0
CARHR020540 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.9e-24 114.8 124 46.8
BraA06t24725Z Brassica rapa HOM05D005168 ORTHO05D006358 1.1e-23 113.6 124 46.0
Eucgr.H00960 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.1e-23 113.6 121 47.1
AagrBONN_evm.TU.Sc2ySwM_368.3393 Anthoceros agrestis HOM05D005168 ORTHO05D006358 1.4e-23 113.2 123 48.8
BcaC05g25900 Brassica carinata HOM05D005168 ORTHO05D006358 1.4e-23 113.2 124 46.0
C05p18550 Brassica napus HOM05D005168 ORTHO05D006358 1.4e-23 113.2 124 46.0
BolC5t30566H Brassica oleracea HOM05D005168 ORTHO05D006358 3.2e-23 112.1 124 46.0
CARHR146930 Cardamine hirsuta HOM05D005168 ORTHO05D006358 4.2e-23 111.7 124 46.0
Lsat_1_v5_gn_2_14120 Lactuca sativa HOM05D005168 ORTHO05D006358 5.5e-23 111.3 127 44.1
Thecc.08G047200 Theobroma cacao HOM05D005168 ORTHO05D006358 5.5e-23 111.3 126 46.0
Eucgr.C01258 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.2e-22 110.2 121 45.5
A06p16200 Brassica napus HOM05D005168 ORTHO05D006358 1.6e-22 109.8 124 45.2
Carub.0005s0380 Capsella rubella HOM05D005168 ORTHO05D006358 1.6e-22 109.8 127 44.1
Duzib093G1099 Durio zibethinus HOM05D005168 ORTHO05D006358 1.6e-22 109.8 126 47.6
ECA238G1857 Erigeron canadensis HOM05D005168 ORTHO05D006358 2.1e-22 109.4 127 43.3
unitig_22.g6797 Utricularia gibba HOM05D005168 ORTHO05D006358 3.5e-22 108.6 125 44.8
Mapoly0043s0107 Marchantia polymorpha HOM05D005168 ORTHO05D006358 1.8e-21 106.3 125 44.8
Zm00001eb054840 Zea mays HOM05D005168 ORTHO05D006358 5.1e-21 104.8 124 42.7
Gohir.A06G002600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 6.7e-21 104.4 125 44.0
Gohir.D06G005600 Gossypium hirsutum HOM05D005168 ORTHO05D006358 6.7e-21 104.4 125 44.0
Gorai.010G002800 Gossypium raimondii HOM05D005168 ORTHO05D006358 6.7e-21 104.4 125 44.0
Ciclev10003775m.g Citrus clementina HOM05D005168 ORTHO05D006358 1.5e-20 103.2 119 42.9
HanXRQChr04g0101211 Helianthus annuus HOM05D005168 ORTHO05D006358 4.3e-20 101.7 120 43.3
Sopen04g024330 Solanum pennellii HOM05D005168 ORTHO05D006358 4.3e-20 101.7 114 45.6
ATR0057G015 Amborella trichopoda HOM05D005168 ORTHO05D006358 8.2e-19 97.4 96 52.1
FAN23G3095 Fragaria x ananassa HOM05D005168 ORTHO05D006358 1.8e-18 96.3 122 43.4
FvH4_1g24780 Fragaria vesca HOM05D005168 ORTHO05D006358 5.3e-18 94.7 122 42.6
Sabra13G0016900 Salix brachista HOM05D005168 ORTHO05D006358 3.4e-17 92.0 104 41.3
Dinv40488 Davidia involucrata HOM05D005168 ORTHO05D006358 4.5e-17 91.7 111 45.0
CDE09G0329 Ceratophyllum demersum HOM05D005168 ORTHO05D006358 5.9e-17 91.3 79 53.2
Sabra13G0012900 Salix brachista HOM05D005168 ORTHO05D006358 1.0e-16 90.5 95 42.1
RcHm_v2.0_Chr2g0124111 Rosa chinensis HOM05D005168 ORTHO05D006358 7.2e-15 84.3 123 39.8
Pp3c24_7070 Physcomitrium patens HOM05D005168 ORTHO05D006358 2.1e-14 82.8 157 31.8
SMO351G0141 Selaginella moellendorffii HOM05D005168 ORTHO05D006358 2.7e-14 82.4 122 38.5
Cre01.g018000 Chlamydomonas reinhardtii HOM05D005168 ORTHO05D006358 4.6e-14 81.6 125 36.8
Ca_15982_v3 Cicer arietinum L. HOM05D005168 ORTHO05D006358 1.4e-13 80.1 53 64.2
Eucgr.L01842 Eucalyptus grandis HOM05D005168 ORTHO05D006358 1.4e-13 80.1 60 55.0
HPP92_028162 Vanilla planifolia HOM05D005168 ORTHO05D006358 2.3e-13 79.3 92 43.5
Glyma.19G179600 Glycine max HOM05D005168 ORTHO05D006358 1.7e-11 73.2 57 52.6
AL1G32870 Arabidopsis lyrata HOM05D005168 ORTHO05D006358 3.7e-11 72.0 64 48.4
AT1G20065 Arabidopsis thaliana HOM05D005168 ORTHO05D006358 6.3e-11 71.2 61 50.8
MD15G1010600 Malus domestica HOM05D005168 ORTHO05D006358 1.4e-10 70.1 54 51.9
Aqoxy6G02286 Aquilegia oxysepala HOM05D005168 ORTHO05D006358 4.1e-10 68.6 126 32.5
ClCG08G014170 Citrullus lanatus HOM05D005168 ORTHO05D006358 7.7e-09 64.3 40 70.0
BcaC05g25904 Brassica carinata HOM05D005168 ORTHO05D006358 1.0e-08 63.9 96 39.6
THA.LOC109116732 Tarenaya hassleriana HOM05D005168 ORTHO05D006358 1.3e-08 63.5 45 60.0
CBR_g23850 Chara braunii HOM05D005168 ORTHO05D006358 2.2e-08 62.8 83 41.0
TPR.G9182 Trifolium pratense HOM05D005168 ORTHO05D006358 1.9e-07 59.7 82 35.4
MCO15G369 Micromonas commoda HOM05D005168 ORTHO05D006358 3.2e-07 58.9 132 30.3
Eucgr.F02832 Eucalyptus grandis HOM05D005168 ORTHO05D006358 2.1e-06 56.2 87 35.6
Medtr5g030180 Medicago truncatula HOM05D006029 ORTHO05D007439 7.9e-06 54.3 129 30.2


User provided reference genes

Program Settings