Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0004190 Simmondsia chinensis HOM05D005561 ORTHO05D006834 1.9e-66 255.8 134 100.0
Sc02g0009190 Simmondsia chinensis HOM05D005561 ORTHO05D006834 6.0e-20 101.3 154 43.5
Lj1g0007073 Lotus japonicus HOM05D005561 ORTHO05D006834 7.6e-15 84.3 156 39.1
Cc10_g00480 Coffea canephora HOM05D005561 ORTHO05D006834 9.9e-15 84.0 154 37.0
SalBow6G7068 Salvia bowleyana HOM05D005561 ORTHO05D006834 1.7e-14 83.2 163 38.0
ClCG08G009280 Citrullus lanatus HOM05D005561 ORTHO05D006834 2.9e-14 82.4 156 39.1
COL.COLO4_35541 Corchorus olitorius HOM05D005561 ORTHO05D006834 2.9e-14 82.4 165 35.2
Prupe.5G009000 Prunus persica HOM05D005561 ORTHO05D006834 3.7e-14 82.0 156 39.7
Gohir.A01G103500 Gossypium hirsutum HOM05D005561 ORTHO05D006834 6.4e-14 81.3 164 37.2
Thecc.08G062600 Theobroma cacao HOM05D005561 ORTHO05D006834 6.4e-14 81.3 165 38.2
CSS0019163 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 8.4e-14 80.9 165 37.6
Gohir.D01G088800 Gossypium hirsutum HOM05D005561 ORTHO05D006834 8.4e-14 80.9 164 37.2
Gorai.002G114500 Gossypium raimondii HOM05D005561 ORTHO05D006834 8.4e-14 80.9 164 37.2
TWI56G0057 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 1.1e-13 80.5 164 39.6
AUR62035143 Chenopodium quinoa HOM05D005561 ORTHO05D006834 2.4e-13 79.3 161 38.5
AUR62042576 Chenopodium quinoa HOM05D005561 ORTHO05D006834 2.4e-13 79.3 161 38.5
CANSAT78G2155 Cannabis sativa HOM05D005561 ORTHO05D006834 3.2e-13 79.0 155 39.4
RcHm_v2.0_Chr7g0215931 Rosa chinensis HOM05D005561 ORTHO05D006834 4.1e-13 78.6 160 36.2
TWI36G1622 Tripterygium wilfordii HOM05D005561 ORTHO05D006834 4.1e-13 78.6 154 40.3
THA.LOC104801947 Tarenaya hassleriana HOM05D005561 ORTHO05D006834 5.4e-13 78.2 155 40.0
Haze_22832 Corylus avellana HOM05D005561 ORTHO05D006834 7.1e-13 77.8 155 37.4
MELO3C026526.2 Cucumis melo HOM05D005561 ORTHO05D006834 7.1e-13 77.8 154 37.0
CsaV3_6G031410 Cucumis sativus L. HOM05D005561 ORTHO05D006834 7.1e-13 77.8 154 37.0
Cfa014114 Carpinus fangiana HOM05D005561 ORTHO05D006834 9.2e-13 77.4 156 37.2
Glyma.04G016300 Glycine max HOM05D005561 ORTHO05D006834 1.2e-12 77.0 153 37.9
Manes.05G124800 Manihot esculenta HOM05D005561 ORTHO05D006834 1.2e-12 77.0 166 38.6
MD00G1113700 Malus domestica HOM05D005561 ORTHO05D006834 2.1e-12 76.3 157 37.6
MSTRG.22092 Avicennia marina HOM05D005561 ORTHO05D006834 2.7e-12 75.9 165 35.2
Duzib041G0482 Durio zibethinus HOM05D005561 ORTHO05D006834 2.7e-12 75.9 156 34.6
Duzib093G0247 Durio zibethinus HOM05D005561 ORTHO05D006834 2.7e-12 75.9 156 37.8
Eucgr.F01790 Eucalyptus grandis HOM05D005561 ORTHO05D006834 2.7e-12 75.9 162 39.5
CAN.G311.134 Capsicum annuum HOM05D005561 ORTHO05D006834 3.5e-12 75.5 156 34.6
PGSC0003DMG400009989 Solanum tuberosum HOM05D005561 ORTHO05D006834 3.5e-12 75.5 156 35.3
arahy.Tifrunner.gnm1.ann1.NG9QQJ Arachis hypogaea HOM05D005561 ORTHO05D006834 4.6e-12 75.1 156 35.9
SalBow1G8439 Salvia bowleyana HOM05D005561 ORTHO05D006834 4.6e-12 75.1 164 33.5
SalBow7G4605 Salvia bowleyana HOM05D005561 ORTHO05D006834 4.6e-12 75.1 164 33.5
Sopen04g036210 Solanum pennellii HOM05D005561 ORTHO05D006834 4.6e-12 75.1 165 35.2
Cpa.g.sc26.163 Carica papaya HOM05D005561 ORTHO05D006834 6.0e-12 74.7 152 38.2
Solyc04g082580.3 Solanum lycopersicum HOM05D005561 ORTHO05D006834 6.0e-12 74.7 156 35.3
Glyma.06G016400 Glycine max HOM05D005561 ORTHO05D006834 7.8e-12 74.3 156 39.7
MD06G1007100 Malus domestica HOM05D005561 ORTHO05D006834 7.8e-12 74.3 154 38.3
Sed0010562 Sechium edule HOM05D005561 ORTHO05D006834 7.8e-12 74.3 153 36.6
Ah.11g041760 Amaranthus hybridus HOM05D005561 ORTHO05D006834 1.0e-11 73.9 161 37.3
Medtr3g115870 Medicago truncatula HOM05D005561 ORTHO05D006834 1.0e-11 73.9 160 36.2
Psat5g009720 Pisum sativum HOM05D005561 ORTHO05D006834 1.0e-11 73.9 161 37.9
VMungo1309G3038 Vigna mungo HOM05D005561 ORTHO05D006834 1.0e-11 73.9 156 35.3
Duzib116G0146 Durio zibethinus HOM05D005561 ORTHO05D006834 1.3e-11 73.6 156 34.6
PGR083G0762 Punica granatum HOM05D005561 ORTHO05D006834 1.3e-11 73.6 157 38.2
CiPaw.07G135900 Carya illinoinensis HOM05D005561 ORTHO05D006834 1.7e-11 73.2 156 36.5
Ciclev10000678m.g Citrus clementina HOM05D005561 ORTHO05D006834 1.7e-11 73.2 159 35.2
FAN18G1577 Fragaria x ananassa HOM05D005561 ORTHO05D006834 1.7e-11 73.2 156 34.6
Dinv31967 Davidia involucrata HOM05D005561 ORTHO05D006834 2.3e-11 72.8 166 35.5
Potri.005G253500 Populus trichocarpa HOM05D005561 ORTHO05D006834 2.3e-11 72.8 166 36.1
QL02p015136 Quercus lobata HOM05D005561 ORTHO05D006834 2.3e-11 72.8 155 36.1
Sabra05G0196600 Salix brachista HOM05D005561 ORTHO05D006834 2.3e-11 72.8 166 34.3
Rhsim06G0005100 Rhododendron simsii HOM05D005561 ORTHO05D006834 3.9e-11 72.0 165 34.5
EL10Ac1g01911 Beta vulgaris HOM05D005561 ORTHO05D006834 8.6e-11 70.9 161 37.9
BcaC04g22001 Brassica carinata HOM05D005561 ORTHO05D006834 8.6e-11 70.9 152 37.5
C09p24980 Brassica napus HOM05D005561 ORTHO05D006834 8.6e-11 70.9 153 37.3
BolC9t55390H Brassica oleracea HOM05D005561 ORTHO05D006834 8.6e-11 70.9 153 37.3
Sabra02G0006100 Salix brachista HOM05D005561 ORTHO05D006834 8.6e-11 70.9 166 34.9
CSS0027936 Camellia sinensis var. sinensis HOM05D005561 ORTHO05D006834 1.9e-10 69.7 159 35.8
CARHR284980 Cardamine hirsuta HOM05D005561 ORTHO05D006834 1.9e-10 69.7 151 34.4
Phvul.009G012500 Phaseolus vulgaris HOM05D005561 ORTHO05D006834 1.9e-10 69.7 147 36.7
FAN13G3253 Fragaria x ananassa HOM05D005561 ORTHO05D006834 5.6e-10 68.2 160 33.1
Migut.N02971 Erythranthe guttata HOM05D005561 ORTHO05D006834 7.3e-10 67.8 151 37.1
Aa31LG9G12500 Aethionema arabicum HOM05D005561 ORTHO05D006834 9.6e-10 67.4 152 36.2
Aqoxy5G00977 Aquilegia oxysepala HOM05D005561 ORTHO05D006834 9.6e-10 67.4 170 34.7
HanXRQChr15g0492491 Helianthus annuus HOM05D005561 ORTHO05D006834 9.6e-10 67.4 160 36.2
Potri.002G007700 Populus trichocarpa HOM05D005561 ORTHO05D006834 9.6e-10 67.4 167 32.9
unitig_22.g5815 Utricularia gibba HOM05D005561 ORTHO05D006834 1.2e-09 67.0 151 33.1
vmacro21786 Vaccinium macrocarpon HOM05D005561 ORTHO05D006834 1.2e-09 67.0 165 34.5
AL8G19230 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 1.6e-09 66.6 151 33.8
Carub.0008s0680 Capsella rubella HOM05D005561 ORTHO05D006834 2.1e-09 66.2 152 36.8
Lj4C7T6 Lonicera japonica HOM05D005561 ORTHO05D006834 2.1e-09 66.2 148 35.1
Lalb_Chr23g0265661 Lupinus albus HOM05D005561 ORTHO05D006834 2.8e-09 65.9 159 36.5
Nn5g31005 Nelumbo nucifera HOM05D005561 ORTHO05D006834 2.8e-09 65.9 155 35.5
TPR.G38189 Trifolium pratense HOM05D005561 ORTHO05D006834 4.7e-09 65.1 164 34.1
DCAR_016786 Daucus carota HOM05D005561 ORTHO05D006834 8.1e-09 64.3 154 34.4
Ca_15401_v3 Cicer arietinum L. HOM05D005561 ORTHO05D006834 1.1e-08 63.9 155 33.5
ECA232G0027 Erigeron canadensis HOM05D005561 ORTHO05D006834 1.1e-08 63.9 161 32.3
HanXRQChr05g0144831 Helianthus annuus HOM05D005561 ORTHO05D006834 1.1e-08 63.9 150 36.0
SGA_v2.0_scaffold54G19641 Striga asiatica HOM05D005561 ORTHO05D006834 1.4e-08 63.5 169 32.0
FAN04G1314 Fragaria x ananassa HOM05D005561 ORTHO05D006834 1.8e-08 63.2 152 33.6
Actinidia17061 Actinidia chinensis HOM05D005561 ORTHO05D006834 2.4e-08 62.8 166 34.3
AT5G42350 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 2.4e-08 62.8 151 33.1
AL8G19220 Arabidopsis lyrata HOM05D005561 ORTHO05D006834 3.1e-08 62.4 152 32.2
A09p19610 Brassica napus HOM05D005561 ORTHO05D006834 3.1e-08 62.4 155 35.5
BraA09t37572Z Brassica rapa HOM05D005561 ORTHO05D006834 3.1e-08 62.4 155 35.5
Lalb_Chr11g0061481 Lupinus albus HOM05D005561 ORTHO05D006834 5.2e-08 61.6 161 33.5
Nitab4.5_0000383g0380 Nicotiana tabacum HOM05D005561 ORTHO05D006834 5.2e-08 61.6 156 32.1
FAN08G1213 Fragaria x ananassa HOM05D005561 ORTHO05D006834 8.9e-08 60.8 152 32.9
Nitab4.5_0001208g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 2.0e-07 59.7 156 32.1
HanXRQChr06g0185211 Helianthus annuus HOM05D005561 ORTHO05D006834 2.6e-07 59.3 136 35.3
Nitab4.5_0009646g0070 Nicotiana tabacum HOM05D005561 ORTHO05D006834 2.6e-07 59.3 156 31.4
AT5G42360 Arabidopsis thaliana HOM05D005561 ORTHO05D006834 3.4e-07 58.9 152 31.6
Sp7g08210 Schrenkiella parvula HOM05D005561 ORTHO05D006834 3.4e-07 58.9 136 33.8
FvH4_5g25640 Fragaria vesca HOM05D005561 ORTHO05D006834 5.8e-07 58.2 140 32.9
BcaB07g31083 Brassica carinata HOM05D005561 ORTHO05D006834 1.3e-06 57.0 155 33.5
BcaNung05251 Brassica carinata HOM05D005561 ORTHO05D006834 1.3e-06 57.0 155 33.5
Thhalv10003171m.g Eutrema salsugineum HOM05D005561 ORTHO05D006834 1.3e-06 57.0 156 32.7
PSO170G1066 Papaver somniferum HOM05D005561 ORTHO05D006834 1.3e-06 57.0 157 31.2
AUR62042579 Chenopodium quinoa HOM05D005561 ORTHO05D006834 8.4e-06 54.3 87 37.9
Lsat_1_v5_gn_9_45721 Lactuca sativa HOM05D005561 ORTHO05D006834 8.4e-06 54.3 160 31.9


User provided reference genes

Program Settings