Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0001880 Simmondsia chinensis HOM05D005013 ORTHO05D006005 5.8e-277 957.2 589 100.0
Dinv30436 Davidia involucrata HOM05D005013 ORTHO05D006005 7.9e-141 505.0 567 68.4
CSS0033602 Camellia sinensis var. sinensis HOM05D005013 ORTHO05D006005 4.9e-135 485.7 564 67.2
EL10Ac9g21206 Beta vulgaris HOM05D005013 ORTHO05D006005 1.9e-134 483.8 553 64.6
MD17G1184000 Malus domestica HOM05D005013 ORTHO05D006005 1.3e-132 477.6 573 60.2
TAR633G2449 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.5e-131 473.4 568 63.4
Ah.01g005800 Amaranthus hybridus HOM05D005013 ORTHO05D006005 3.7e-130 469.5 549 62.3
MD09G1202900 Malus domestica HOM05D005013 ORTHO05D006005 1.1e-129 468.0 573 59.5
Hund07600 Selenicereus undatus HOM05D005013 ORTHO05D006005 3.4e-128 463.0 553 63.3
RcHm_v2.0_Chr2g0140531 Rosa chinensis HOM05D005013 ORTHO05D006005 1.7e-127 460.7 571 60.4
FAN14G4508 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.4e-126 457.6 572 58.4
FvH4_6g32381 Fragaria vesca HOM05D005013 ORTHO05D006005 1.9e-126 457.2 572 58.4
Actinidia32097 Actinidia chinensis HOM05D005013 ORTHO05D006005 1.6e-125 454.1 561 61.5
QL05p020046 Quercus lobata HOM05D005013 ORTHO05D006005 3.6e-125 453.0 434 66.1
Prupe.3G059100 Prunus persica HOM05D005013 ORTHO05D006005 4.6e-125 452.6 420 68.1
Prupe.1G178600 Prunus persica HOM05D005013 ORTHO05D006005 1.8e-124 450.7 426 66.9
Ciclev10025066m.g Citrus clementina HOM05D005013 ORTHO05D006005 3.0e-124 449.9 351 70.9
FAN02G3590 Fragaria x ananassa HOM05D005013 ORTHO05D006005 3.9e-124 449.5 571 56.2
Hma1.2p1_1232F.1_g268910 Hydrangea macrophylla HOM05D005013 ORTHO05D006005 8.8e-124 448.4 335 73.4
FAN05G1466 Fragaria x ananassa HOM05D005013 ORTHO05D006005 2.0e-123 447.2 572 57.7
AUR62022205 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.3e-122 444.5 340 72.1
FAN09G0199 Fragaria x ananassa HOM05D005013 ORTHO05D006005 1.7e-122 444.1 573 56.7
vmacro18853 Vaccinium macrocarpon HOM05D005013 ORTHO05D006005 6.3e-122 442.2 555 60.4
Thecc.06G100000 Theobroma cacao HOM05D005013 ORTHO05D006005 8.2e-122 441.8 428 66.6
CiPaw.02G145800 Carya illinoinensis HOM05D005013 ORTHO05D006005 1.8e-121 440.7 585 57.4
AUR62031914 Chenopodium quinoa HOM05D005013 ORTHO05D006005 1.5e-120 437.6 341 74.5
Cc04_g02560 Coffea canephora HOM05D005013 ORTHO05D006005 2.0e-120 437.2 567 56.6
Phvul.010G145300 Phaseolus vulgaris HOM05D005013 ORTHO05D006005 2.0e-120 437.2 339 70.8
Duzib235G0505 Durio zibethinus HOM05D005013 ORTHO05D006005 2.6e-120 436.8 561 61.7
Glyma.07G015500 Glycine max HOM05D005013 ORTHO05D006005 1.7e-119 434.1 347 70.0
VMungo0331G0134 Vigna mungo HOM05D005013 ORTHO05D006005 2.2e-119 433.7 339 69.9
Glyma.08G201000 Glycine max HOM05D005013 ORTHO05D006005 3.8e-119 433.0 348 69.0
COL.COLO4_30512 Corchorus olitorius HOM05D005013 ORTHO05D006005 6.5e-119 432.2 423 65.2
Manes.11G033651 Manihot esculenta HOM05D005013 ORTHO05D006005 1.1e-118 431.4 341 69.5
Duzib192G0488 Durio zibethinus HOM05D005013 ORTHO05D006005 3.2e-118 429.9 364 66.5
arahy.Tifrunner.gnm1.ann1.R367CR Arachis hypogaea HOM05D005013 ORTHO05D006005 9.4e-118 428.3 355 70.4
CANSAT56G0983 Cannabis sativa HOM05D005013 ORTHO05D006005 9.4e-118 428.3 359 64.1
Sopen03g039850 Solanum pennellii HOM05D005013 ORTHO05D006005 1.2e-117 427.9 356 65.7
Rhsim08G0227500 Rhododendron simsii HOM05D005013 ORTHO05D006005 1.6e-117 427.6 555 60.9
arahy.Tifrunner.gnm1.ann1.1M6YYJ Arachis hypogaea HOM05D005013 ORTHO05D006005 6.1e-117 425.6 355 69.9
Gohir.A09G081200 Gossypium hirsutum HOM05D005013 ORTHO05D006005 6.1e-117 425.6 340 70.6
Solyc03g121020.3 Solanum lycopersicum HOM05D005013 ORTHO05D006005 1.4e-116 424.5 349 66.2
Manes.04G134200 Manihot esculenta HOM05D005013 ORTHO05D006005 1.8e-116 424.1 561 59.0
Gorai.003G061700 Gossypium raimondii HOM05D005013 ORTHO05D006005 2.3e-116 423.7 364 65.4
arahy.Tifrunner.gnm1.ann1.VUMD9N Arachis hypogaea HOM05D005013 ORTHO05D006005 3.0e-116 423.3 604 57.6
Gohir.D03G057900 Gossypium hirsutum HOM05D005013 ORTHO05D006005 1.5e-115 421.0 340 68.2
PGR102G0015 Punica granatum HOM05D005013 ORTHO05D006005 1.5e-115 421.0 364 68.1
Gorai.006G096900 Gossypium raimondii HOM05D005013 ORTHO05D006005 3.3e-115 419.9 340 69.7
Gohir.A02G117400 Gossypium hirsutum HOM05D005013 ORTHO05D006005 5.7e-115 419.1 340 66.5
Gohir.D09G081300 Gossypium hirsutum HOM05D005013 ORTHO05D006005 7.4e-115 418.7 418 67.0
Sed0027607 Sechium edule HOM05D005013 ORTHO05D006005 9.7e-115 418.3 348 64.1
CAN.G1143.13 Capsicum annuum HOM05D005013 ORTHO05D006005 3.7e-114 416.4 552 58.2
Sabra01G0151600 Salix brachista HOM05D005013 ORTHO05D006005 6.3e-114 415.6 359 66.3
Lalb_Chr22g0351551 Lupinus albus HOM05D005013 ORTHO05D006005 8.2e-114 415.2 358 63.4
Potri.001G190000 Populus trichocarpa HOM05D005013 ORTHO05D006005 2.0e-112 410.6 356 64.9
Lj3g0013010 Lotus japonicus HOM05D005013 ORTHO05D006005 3.5e-112 409.8 343 69.7
Aqoxy2G02285 Aquilegia oxysepala HOM05D005013 ORTHO05D006005 7.7e-112 408.7 358 62.6
Lalb_Chr04g0262971 Lupinus albus HOM05D005013 ORTHO05D006005 1.0e-111 408.3 345 67.5
CsaV3_7G035280 Cucumis sativus L. HOM05D005013 ORTHO05D006005 1.3e-111 407.9 317 68.1
SalBow7G4596 Salvia bowleyana HOM05D005013 ORTHO05D006005 1.7e-111 407.5 342 65.5
Eucgr.F03078 Eucalyptus grandis HOM05D005013 ORTHO05D006005 2.2e-111 407.1 570 60.5
ClCG09G000200 Citrullus lanatus HOM05D005013 ORTHO05D006005 8.5e-111 405.2 574 57.8
Nn2g11173 Nelumbo nucifera HOM05D005013 ORTHO05D006005 2.5e-110 403.7 600 57.8
Nitab4.5_0006467g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 2.5e-110 403.7 374 63.1
Oeu026781.2 Olea europaea HOM05D005013 ORTHO05D006005 2.5e-110 403.7 561 56.1
Peaxi162Scf00038g01028 Petunia axillaris HOM05D005013 ORTHO05D006005 2.5e-110 403.7 283 74.6
Potri.003G048900 Populus trichocarpa HOM05D005013 ORTHO05D006005 5.5e-110 402.5 369 63.1
TWI75G0851 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 5.5e-110 402.5 353 66.3
Psat2g107800 Pisum sativum HOM05D005013 ORTHO05D006005 7.2e-110 402.1 341 66.9
TWI12G0488 Tripterygium wilfordii HOM05D005013 ORTHO05D006005 9.4e-110 401.7 344 64.8
PSO339G6278 Papaver somniferum HOM05D005013 ORTHO05D006005 1.2e-109 401.4 311 68.8
TPR.G26938 Trifolium pratense HOM05D005013 ORTHO05D006005 1.2e-109 401.4 280 71.4
MELO3C024438.2 Cucumis melo HOM05D005013 ORTHO05D006005 2.1e-109 400.6 566 57.6
Atru.chr1.3523 Acer truncatum HOM05D005013 ORTHO05D006005 2.7e-109 400.2 361 67.0
Haze_15847 Corylus avellana HOM05D005013 ORTHO05D006005 6.1e-109 399.1 433 62.6
Medtr8g014460 Medicago truncatula HOM05D005013 ORTHO05D006005 8.0e-109 398.7 280 70.4
MSTRG.4752 Avicennia marina HOM05D005013 ORTHO05D006005 1.8e-108 397.5 333 66.1
SGA_v2.0_scaffold4G02026 Striga asiatica HOM05D005013 ORTHO05D006005 2.3e-108 397.1 360 65.0
DCAR_016188 Daucus carota HOM05D005013 ORTHO05D006005 3.9e-108 396.4 340 62.1
Aa31LG4G90 Aethionema arabicum HOM05D005013 ORTHO05D006005 5.2e-108 396.0 365 64.4
HanXRQChr02g0032251 Helianthus annuus HOM05D005013 ORTHO05D006005 5.2e-108 396.0 551 59.2
Ca_23262_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 2.0e-107 394.0 280 71.1
PSO513G0173 Papaver somniferum HOM05D005013 ORTHO05D006005 2.0e-107 394.0 358 63.7
Carub.0002s2777 Capsella rubella HOM05D005013 ORTHO05D006005 4.4e-107 392.9 350 65.4
MBI04_g36817_MAGBIO Magnolia biondii HOM05D005013 ORTHO05D006005 4.4e-107 392.9 573 53.1
Sp5g36040 Schrenkiella parvula HOM05D005013 ORTHO05D006005 4.8e-106 389.4 337 63.5
Duzib160G0376 Durio zibethinus HOM05D005013 ORTHO05D006005 2.4e-105 387.1 427 60.0
AT1G79730 Arabidopsis thaliana HOM05D005013 ORTHO05D006005 1.2e-104 384.8 351 63.8
Lsat_1_v5_gn_1_36740 Lactuca sativa HOM05D005013 ORTHO05D006005 1.6e-104 384.4 571 54.8
GSVIVG01016983001 Vitis vinifera HOM05D005013 ORTHO05D006005 1.7e-103 380.9 250 75.2
Thhalv10018561m.g Eutrema salsugineum HOM05D005013 ORTHO05D006005 2.2e-103 380.6 260 72.7
Lj9C512T10 Lonicera japonica HOM05D005013 ORTHO05D006005 3.2e-102 376.7 596 56.4
A10p33120 Brassica napus HOM05D005013 ORTHO05D006005 1.2e-101 374.8 248 73.0
THA.LOC104819998 Tarenaya hassleriana HOM05D005013 ORTHO05D006005 1.2e-101 374.8 251 72.1
C09p74080 Brassica napus HOM05D005013 ORTHO05D006005 3.6e-101 373.2 248 72.6
BolC9t60139H Brassica oleracea HOM05D005013 ORTHO05D006005 3.6e-101 373.2 248 72.6
BcaC06g31994 Brassica carinata HOM05D005013 ORTHO05D006005 1.4e-100 371.3 260 70.4
ECA247G2560 Erigeron canadensis HOM05D005013 ORTHO05D006005 4.4e-99 366.3 328 63.4
Ca_23271_v3 Cicer arietinum L. HOM05D005013 ORTHO05D006005 1.3e-98 364.8 280 68.2
Lsat_1_v5_gn_4_97461 Lactuca sativa HOM05D005013 ORTHO05D006005 2.2e-98 364.0 559 55.5
unitig_52.g17097 Utricularia gibba HOM05D005013 ORTHO05D006005 1.2e-96 358.2 558 49.6
HanXRQChr09g0276241 Helianthus annuus HOM05D005013 ORTHO05D006005 2.7e-96 357.1 347 57.9
BcaNung02135 Brassica carinata HOM05D005013 ORTHO05D006005 3.8e-95 353.2 239 72.8
CDE12G0264 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 5.0e-95 352.8 267 65.9
Nitab4.5_0006902g0030 Nicotiana tabacum HOM05D005013 ORTHO05D006005 6.5e-95 352.4 279 65.9
CAN.G1143.12 Capsicum annuum HOM05D005013 ORTHO05D006005 1.1e-94 351.7 355 56.9
ATR0661G470 Amborella trichopoda HOM05D005013 ORTHO05D006005 5.7e-91 339.3 270 63.3
AL2G41840 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 7.5e-91 339.0 213 77.9
TAR623G0538 Trochodendron aralioides HOM05D005013 ORTHO05D006005 3.7e-90 336.7 221 74.7
Ah.01g022080 Amaranthus hybridus HOM05D005013 ORTHO05D006005 4.7e-85 319.7 451 61.2
HPP92_015196 Vanilla planifolia HOM05D005013 ORTHO05D006005 3.0e-84 317.0 305 63.0
Os08g0157100 Oryza sativa ssp. japonica HOM05D005013 ORTHO05D006005 2.6e-83 313.9 239 64.4
Zm00001eb172540 Zea mays HOM05D005013 ORTHO05D006005 1.3e-82 311.6 255 61.6
Zm00001eb415930 Zea mays HOM05D005013 ORTHO05D006005 4.1e-81 306.6 262 60.7
AL2G41830 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 2.9e-79 300.4 350 54.3
Mapoly0123s0029 Marchantia polymorpha HOM05D005013 ORTHO05D006005 4.0e-76 290.0 307 50.5
SMO116G0383 Selaginella moellendorffii HOM05D005013 ORTHO05D006005 1.3e-74 285.0 243 60.1
Migut.D00991 Erythranthe guttata HOM05D005013 ORTHO05D006005 3.7e-74 283.5 205 69.8
Cpa.g.sc109.1 Carica papaya HOM05D005013 ORTHO05D006005 7.0e-73 279.3 483 56.1
SHI11095 Sapria himalayana HOM05D005013 ORTHO05D006005 2.0e-72 277.7 372 49.7
AagrBONN_evm.TU.Sc2ySwM_117.3356 Anthoceros agrestis HOM05D005013 ORTHO05D006005 1.9e-70 271.2 311 50.2
arahy.Tifrunner.gnm1.ann1.YYV7TY Arachis hypogaea HOM05D005013 ORTHO05D006005 7.3e-70 269.2 550 44.0
BraA10t45345Z Brassica rapa HOM05D005013 ORTHO05D006005 8.9e-68 262.3 173 73.4
Pp3c1_7460 Physcomitrium patens HOM05D005013 ORTHO05D006005 2.4e-65 254.2 240 53.8
Actinidia21716 Actinidia chinensis HOM05D005013 ORTHO05D006005 2.9e-58 230.7 187 65.2
TAR369G0672 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.4e-57 227.6 262 50.0
CBR_g8033 Chara braunii HOM05D005013 ORTHO05D006005 3.3e-54 217.2 252 46.4
CDE06G0689 Ceratophyllum demersum HOM05D005013 ORTHO05D006005 8.1e-45 186.0 194 54.1
CARHR074670 Cardamine hirsuta HOM05D005013 ORTHO05D006005 2.0e-35 154.8 179 55.3
Migut.I00890 Erythranthe guttata HOM05D005013 ORTHO05D006005 2.0e-35 154.8 397 32.0
Lsat_1_v5_gn_6_46660 Lactuca sativa HOM05D005013 ORTHO05D006005 6.5e-26 123.2 95 64.2
CAN.G907.1 Capsicum annuum HOM05D005013 ORTHO05D006005 3.0e-23 114.4 87 65.5
Psat4g155920 Pisum sativum HOM05D001854 ORTHO05D001800 6.7e-23 113.2 101 56.4
Psat4g155880 Pisum sativum HOM05D001854 ORTHO05D001800 1.5e-22 112.1 101 56.4
Cre12.g520250 Chlamydomonas reinhardtii HOM05D005013 ORTHO05D006005 3.3e-22 110.9 237 33.8
Oeu023601.1 Olea europaea HOM05D005013 ORTHO05D006005 1.0e-18 99.4 339 47.5
TAR560G0009 Trochodendron aralioides HOM05D005013 ORTHO05D006005 2.3e-15 88.2 209 53.6
AL2G25330 Arabidopsis lyrata HOM05D005013 ORTHO05D006005 3.9e-15 87.4 106 50.9
CBR_g48652 Chara braunii HOM05D005013 ORTHO05D006005 3.7e-13 80.9 161 35.4
Lsat_1_v5_gn_1_14160 Lactuca sativa HOM05D005013 ORTHO05D006005 3.7e-13 80.9 106 47.2
Lj5C53T3 Lonicera japonica HOM05D005013 ORTHO05D006005 1.4e-12 79.0 74 58.1
Oeu026780.1 Olea europaea HOM05D005013 ORTHO05D006005 2.0e-11 75.1 350 42.9
MCO01G084 Micromonas commoda HOM05D005013 ORTHO05D006005 3.2e-09 67.8 224 27.7
Lsat_1_v5_gn_5_133740 Lactuca sativa HOM05D000912 ORTHO05D021086 2.5e-06 58.2 42 69.0


User provided reference genes

Program Settings