Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 1.9e-221 772.3 425 100.0
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 5.9e-146 521.5 448 65.8
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.5e-144 516.2 432 71.3
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 2.7e-143 512.7 433 65.1
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 1.0e-142 510.8 440 67.3
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 5.1e-142 508.4 440 67.0
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 9.7e-141 504.2 444 64.0
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 2.4e-139 499.6 444 67.3
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 4.1e-139 498.8 437 64.1
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 5.3e-139 498.4 429 66.4
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 7.0e-139 498.0 443 64.1
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.0e-139 498.0 437 63.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.0e-139 498.0 443 64.1
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 7.0e-139 498.0 448 65.8
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 9.1e-139 497.7 438 64.2
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.0e-138 496.5 437 63.8
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 2.0e-138 496.5 429 64.6
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.6e-138 496.1 443 64.3
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 2.6e-138 496.1 443 63.9
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.4e-138 495.7 444 65.5
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 1.0e-137 494.2 448 65.6
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.7e-137 493.4 422 63.7
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 2.2e-137 493.0 442 63.6
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 2.9e-137 492.7 448 66.3
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.4e-136 490.3 434 67.3
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 1.9e-136 490.0 441 62.8
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.5e-136 489.6 443 66.6
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 3.2e-136 489.2 473 59.2
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 5.5e-136 488.4 435 63.2
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 9.4e-136 487.6 429 65.7
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 1.2e-135 487.3 490 57.6
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 1.6e-135 486.9 437 62.5
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.1e-135 486.5 439 62.6
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 2.1e-135 486.5 444 63.3
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 3.6e-135 485.7 442 62.2
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 8.0e-135 484.6 444 65.1
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 8.0e-135 484.6 434 68.2
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 1.0e-134 484.2 441 60.3
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 1.4e-134 483.8 459 64.7
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 1.8e-134 483.4 455 65.1
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 3.0e-134 482.6 437 61.8
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 5.2e-134 481.9 426 65.3
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 5.2e-134 481.9 435 61.4
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 6.7e-134 481.5 454 60.1
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 8.8e-134 481.1 426 62.4
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 2.0e-133 479.9 450 60.9
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 3.3e-133 479.2 444 62.4
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 3.3e-133 479.2 441 59.4
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 7.4e-133 478.0 438 67.4
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.3e-132 477.2 437 64.8
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 1.3e-132 477.2 437 64.8
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 2.2e-132 476.5 446 62.1
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 8.2e-132 474.6 449 64.1
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 8.2e-132 474.6 452 60.2
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 4.1e-131 472.2 442 61.5
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 5.3e-131 471.9 451 61.0
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 7.0e-131 471.5 446 60.5
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 1.6e-130 470.3 455 59.3
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 2.0e-130 469.9 446 60.5
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 3.5e-130 469.2 452 58.8
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 5.9e-130 468.4 442 62.2
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 7.7e-130 468.0 447 64.4
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.0e-129 467.6 422 62.3
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.0e-129 467.6 438 60.3
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 1.3e-129 467.2 432 63.2
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 1.7e-129 466.8 452 58.8
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.8e-129 465.7 451 60.5
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 6.5e-129 464.9 434 66.1
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 1.1e-128 464.2 438 65.1
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 1.5e-128 463.8 438 59.6
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 1.9e-128 463.4 433 61.0
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 1.9e-128 463.4 441 61.7
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 2.5e-128 463.0 438 59.6
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 7.2e-128 461.5 482 56.6
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.2e-127 460.7 436 61.2
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.7e-127 459.5 449 59.0
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 4.7e-127 458.8 447 58.8
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 4.7e-127 458.8 447 59.3
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 1.4e-126 457.2 447 59.5
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 2.3e-126 456.4 442 64.0
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 2.3e-126 456.4 435 60.7
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 4.0e-126 455.7 423 65.5
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.0e-126 455.7 429 63.9
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 6.7e-126 454.9 437 59.0
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 2.0e-125 453.4 432 66.0
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 2.6e-125 453.0 475 56.2
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 5.7e-125 451.8 442 57.5
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 1.3e-124 450.7 457 61.7
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 1.7e-124 450.3 495 53.9
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 2.2e-124 449.9 444 63.3
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 2.8e-124 449.5 445 59.6
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 8.2e-124 448.0 457 59.7
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 1.1e-123 447.6 457 59.7
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 2.4e-123 446.4 455 59.1
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 3.1e-123 446.0 457 60.2
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 1.2e-122 444.1 436 63.5
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 1.6e-122 443.7 448 63.8
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 3.5e-122 442.6 424 64.6
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 1.9e-120 436.8 454 58.6
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.5e-120 435.3 428 62.4
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 7.2e-120 434.9 445 57.8
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 2.1e-119 433.3 438 61.6
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 6.8e-118 428.3 444 58.3
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 1.6e-114 417.2 428 62.1
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 1.5e-109 400.6 438 58.2
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 2.6e-109 399.8 437 61.8
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 8.6e-105 384.8 437 52.6
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 4.4e-101 372.5 438 57.1
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 9.8e-101 371.3 442 55.0
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 1.0e-97 361.3 435 55.9
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 3.0e-97 359.8 472 47.0
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 1.6e-95 354.0 290 65.9
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.8e-94 350.5 301 70.8
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 4.4e-93 345.9 370 61.4
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 5.8e-93 345.5 382 55.0
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 9.8e-93 344.7 386 51.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 1.2e-90 337.8 376 58.8
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 6.4e-84 315.5 467 49.5
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.1e-83 314.7 418 50.0
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.2e-79 301.2 503 42.5
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 6.2e-79 298.9 432 45.8
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 1.7e-68 264.2 302 54.6
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 4.8e-63 246.1 144 84.0
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.2e-61 241.5 214 63.1
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 1.9e-59 234.2 269 52.8
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.1e-55 220.7 138 79.7
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.4e-54 217.2 437 40.7
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 2.0e-53 214.2 437 40.7
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 1.6e-50 204.5 259 44.8
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 1.6e-50 204.5 259 44.8
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.1e-43 181.8 352 40.1
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.9e-43 181.0 323 39.3
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 1.4e-35 154.8 128 60.2
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 3.6e-34 150.2 184 53.8
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 4.6e-34 149.8 74 93.2
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 1.5e-32 144.8 84 85.7
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 1.0e-28 132.1 69 89.9
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.3e-28 131.7 232 40.5
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 1.3e-28 131.7 232 40.5
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.1e-27 128.6 176 50.0
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 2.1e-26 124.4 72 83.3
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 4.7e-26 123.2 68 83.8
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 2.6e-24 117.5 69 81.2
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 9.7e-24 115.5 115 54.8
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 8.2e-23 112.5 83 69.9
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 3.5e-21 107.1 62 82.3
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 7.7e-21 105.9 140 45.0
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 1.3e-20 105.1 124 54.0
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.0e-12 79.0 62 66.1
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 8.5e-12 75.9 422 26.1
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 3.2e-11 73.9 91 49.5


User provided reference genes

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