Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc15g0000130 Simmondsia chinensis HOM05D006300 ORTHO05D007623 1.4e-141 506.5 295 100.0
Dinv30382 Davidia involucrata HOM05D006300 ORTHO05D007623 5.7e-23 112.5 141 53.9
Hund20857 Selenicereus undatus HOM05D006300 ORTHO05D007623 7.7e-20 102.1 247 35.6
Actinidia21757 Actinidia chinensis HOM05D006300 ORTHO05D007623 2.9e-19 100.1 133 55.6
Dinv37916 Davidia involucrata HOM05D006300 ORTHO05D007623 2.9e-19 100.1 229 41.5
Nitab4.5_0007429g0010 Nicotiana tabacum HOM05D006300 ORTHO05D007623 8.5e-19 98.6 135 54.1
Peaxi162Scf00038g01529 Petunia axillaris HOM05D006300 ORTHO05D007623 1.1e-18 98.2 126 49.2
PGSC0003DMG400002589 Solanum tuberosum HOM05D006300 ORTHO05D007623 1.1e-18 98.2 136 52.2
Sopen03g040370 Solanum pennellii HOM05D006300 ORTHO05D007623 1.5e-18 97.8 136 49.3
Nitab4.5_0001295g0030 Nicotiana tabacum HOM05D006300 ORTHO05D007623 9.4e-18 95.1 135 51.9
Ah.15g094170 Amaranthus hybridus HOM05D006300 ORTHO05D007623 1.2e-17 94.7 212 37.3
Solyc03g121560.3 Solanum lycopersicum HOM05D006300 ORTHO05D007623 1.6e-17 94.4 136 48.5
vmacro18787 Vaccinium macrocarpon HOM05D006300 ORTHO05D007623 2.1e-17 94.0 129 58.1
MSTRG.10986 Avicennia marina HOM05D006300 ORTHO05D007623 2.7e-17 93.6 120 53.3
Lj9P518T56 Lonicera japonica HOM05D006300 ORTHO05D007623 2.7e-17 93.6 155 49.7
CSS0019345 Camellia sinensis var. sinensis HOM05D006300 ORTHO05D007623 1.8e-16 90.9 130 55.4
CANSAT56G1450 Cannabis sativa HOM05D006300 ORTHO05D007623 3.0e-16 90.1 134 51.5
CAN.G1389.16 Capsicum annuum HOM05D006300 ORTHO05D007623 3.0e-16 90.1 116 58.6
TAR624G0799 Trochodendron aralioides HOM05D006300 ORTHO05D007623 5.2e-16 89.4 254 39.8
GSVIVG01016850001 Vitis vinifera HOM05D006300 ORTHO05D007623 2.0e-15 87.4 129 51.2
QL05p012743 Quercus lobata HOM05D006300 ORTHO05D007623 3.4e-15 86.7 145 48.3
MD17G1174400 Malus domestica HOM05D006300 ORTHO05D007623 5.7e-15 85.9 130 51.5
Rhsim08G0233100 Rhododendron simsii HOM05D006300 ORTHO05D007623 1.4e-13 81.3 134 44.0
TAR636G0696 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.8e-13 80.9 231 33.3
Prupe.3G050100 Prunus persica HOM05D006300 ORTHO05D007623 7.0e-13 79.0 205 34.1
Nn6g35476 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.2e-12 78.2 224 41.1
Migut.I01022 Erythranthe guttata HOM05D006300 ORTHO05D007623 1.6e-12 77.8 151 46.4
CiPaw.01G225300 Carya illinoinensis HOM05D006300 ORTHO05D007623 2.0e-12 77.4 138 42.0
Medtr2g100100 Medicago truncatula HOM05D006300 ORTHO05D007623 2.7e-12 77.0 135 45.9
arahy.Tifrunner.gnm1.ann1.X9C73S Arachis hypogaea HOM05D006300 ORTHO05D007623 3.5e-12 76.6 122 47.5
Lalb_Chr24g0396361 Lupinus albus HOM05D006300 ORTHO05D007623 3.5e-12 76.6 148 36.5
Manes.11G026800 Manihot esculenta HOM05D006300 ORTHO05D007623 3.5e-12 76.6 136 50.0
Haze_15947 Corylus avellana HOM05D006300 ORTHO05D007623 7.7e-12 75.5 225 29.8
Manes.04G139300 Manihot esculenta HOM05D006300 ORTHO05D007623 7.7e-12 75.5 173 41.0
PSO210G0359 Papaver somniferum HOM05D006300 ORTHO05D007623 1.0e-11 75.1 56 69.6
PSO210G2046 Papaver somniferum HOM05D006300 ORTHO05D007623 1.0e-11 75.1 56 69.6
Gorai.011G065200 Gossypium raimondii HOM05D006300 ORTHO05D007623 1.3e-11 74.7 143 41.3
TAR383G0464 Trochodendron aralioides HOM05D006300 ORTHO05D007623 1.3e-11 74.7 42 85.7
arahy.Tifrunner.gnm1.ann1.F4I7X2 Arachis hypogaea HOM05D006300 ORTHO05D007623 2.2e-11 73.9 122 45.1
ClCG09G000650 Citrullus lanatus HOM05D006300 ORTHO05D007623 2.2e-11 73.9 125 38.4
Gohir.D10G061000 Gossypium hirsutum HOM05D006300 ORTHO05D007623 2.9e-11 73.6 198 34.8
Potri.003G038600 Populus trichocarpa HOM05D006300 ORTHO05D007623 2.9e-11 73.6 121 48.8
SalBow6G0902 Salvia bowleyana HOM05D006300 ORTHO05D007623 2.9e-11 73.6 120 49.2
Gorai.003G059300 Gossypium raimondii HOM05D006300 ORTHO05D007623 5.0e-11 72.8 141 46.1
HanXRQChr09g0276431 Helianthus annuus HOM05D006300 ORTHO05D007623 5.0e-11 72.8 45 80.0
PGR102G2043 Punica granatum HOM05D006300 ORTHO05D007623 5.0e-11 72.8 50 68.0
PGR102G2710 Punica granatum HOM05D006300 ORTHO05D007623 5.0e-11 72.8 50 68.0
Gohir.A02G115200 Gossypium hirsutum HOM05D006300 ORTHO05D007623 6.5e-11 72.4 141 46.1
CiPaw.02G140400 Carya illinoinensis HOM05D006300 ORTHO05D007623 8.5e-11 72.0 128 43.8
CsaV3_7G034830 Cucumis sativus L. HOM05D006300 ORTHO05D007623 8.5e-11 72.0 124 44.4
Cpa.g.sc25.56 Carica papaya HOM05D006300 ORTHO05D007623 1.1e-10 71.6 154 43.5
Lsat_1_v5_gn_4_95241 Lactuca sativa HOM05D006300 ORTHO05D007623 1.1e-10 71.6 44 79.5
Atru.chr1.3720 Acer truncatum HOM05D001008 ORTHO05D003146 1.5e-10 71.2 148 38.5
Aqoxy7G01215 Aquilegia oxysepala HOM05D006300 ORTHO05D007623 1.9e-10 70.9 61 60.7
Gohir.D03G056300 Gossypium hirsutum HOM05D006300 ORTHO05D007623 1.9e-10 70.9 141 45.4
Duzib235G0903 Durio zibethinus HOM05D006300 ORTHO05D007623 2.5e-10 70.5 149 40.9
Duzib160G0060 Durio zibethinus HOM05D006300 ORTHO05D007623 3.2e-10 70.1 150 46.0
MELO3C024394.2 Cucumis melo HOM05D006300 ORTHO05D007623 5.5e-10 69.3 127 42.5
COL.COLO4_30656 Corchorus olitorius HOM05D006300 ORTHO05D007623 7.2e-10 68.9 46 73.9
DCAR_007620 Daucus carota HOM05D006300 ORTHO05D007623 7.2e-10 68.9 43 76.7
Duzib192G0510 Durio zibethinus HOM05D006300 ORTHO05D007623 7.2e-10 68.9 215 32.6
Thecc.06G111200 Theobroma cacao HOM05D006300 ORTHO05D007623 7.2e-10 68.9 42 81.0
Gohir.A10G059500 Gossypium hirsutum HOM05D006300 ORTHO05D007623 9.4e-10 68.6 180 38.3
Cc04_g01980 Coffea canephora HOM05D006300 ORTHO05D007623 1.6e-09 67.8 39 82.1
Sabra03G0025100 Salix brachista HOM05D006300 ORTHO05D007623 2.1e-09 67.4 44 77.3
THA.LOC104812213 Tarenaya hassleriana HOM05D006300 ORTHO05D007623 2.1e-09 67.4 145 37.9
Lj3g0013508 Lotus japonicus HOM05D006300 ORTHO05D007623 2.7e-09 67.0 55 61.8
Sp1g15770 Schrenkiella parvula HOM05D006300 ORTHO05D007623 3.6e-09 66.6 138 37.0
AT1G17665 Arabidopsis thaliana HOM05D006300 ORTHO05D007623 1.0e-08 65.1 44 72.7
Nn8g38867 Nelumbo nucifera HOM05D006300 ORTHO05D007623 1.0e-08 65.1 44 75.0
TPR.G6530 Trifolium pratense HOM05D006300 ORTHO05D007623 1.0e-08 65.1 60 55.0
A06p13560 Brassica napus HOM05D006300 ORTHO05D007623 2.3e-08 63.9 46 69.6
BraA06t24508Z Brassica rapa HOM05D006300 ORTHO05D007623 2.3e-08 63.9 46 69.6
CARHR018270 Cardamine hirsuta HOM05D006300 ORTHO05D007623 2.3e-08 63.9 57 63.2
Oeu007005.1 Olea europaea HOM05D006300 ORTHO05D007623 2.3e-08 63.9 46 69.6
AL1G29990 Arabidopsis lyrata HOM05D006300 ORTHO05D007623 5.2e-08 62.8 44 70.5
BcaC05g25688 Brassica carinata HOM05D006300 ORTHO05D007623 5.2e-08 62.8 45 68.9
C05p16080 Brassica napus HOM05D006300 ORTHO05D007623 5.2e-08 62.8 45 68.9
BolC5t30308H Brassica oleracea HOM05D006300 ORTHO05D007623 5.2e-08 62.8 45 68.9
Thhalv10008108m.g Eutrema salsugineum HOM05D006300 ORTHO05D007623 5.2e-08 62.8 61 57.4
Ciclev10025783m.g Citrus clementina HOM05D006300 ORTHO05D007623 6.8e-08 62.4 188 41.0
BcaB07g34023 Brassica carinata HOM05D006300 ORTHO05D007623 8.8e-08 62.0 44 70.5
ECA232G1041 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.5e-07 61.2 41 82.9
FvH4_6g33270 Fragaria vesca HOM05D006300 ORTHO05D007623 2.6e-07 60.5 46 60.9
FAN14G0371 Fragaria x ananassa HOM05D006300 ORTHO05D007623 2.6e-07 60.5 46 60.9
RcHm_v2.0_Chr2g0142971 Rosa chinensis HOM05D006300 ORTHO05D007623 3.4e-07 60.1 46 60.9
Carub.0001s1740 Capsella rubella HOM05D006300 ORTHO05D007623 5.7e-07 59.3 42 71.4
FAN02G1261 Fragaria x ananassa HOM05D006300 ORTHO05D007623 5.7e-07 59.3 42 64.3
FAN05G1138 Fragaria x ananassa HOM05D006300 ORTHO05D007623 5.7e-07 59.3 46 58.7
Aa31LG7G2500 Aethionema arabicum HOM05D006300 ORTHO05D007623 2.8e-06 57.0 45 62.2
MBI04_g34125_MAGBIO Magnolia biondii HOM05D006300 ORTHO05D007623 4.8e-06 56.2 42 64.3
Glyma.13G350600 Glycine max HOM05D006300 ORTHO05D007623 6.3e-06 55.8 58 53.4


User provided reference genes

Program Settings