Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 0.0e+00 1171.0 565 100.0
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.8e-283 978.8 561 82.0
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 5.7e-282 973.8 560 81.8
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 3.7e-281 971.1 570 81.1
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 2.4e-280 968.4 563 81.5
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 9.2e-280 966.5 555 82.7
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 9.2e-280 966.5 550 82.2
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.2e-279 966.1 585 78.8
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 2.7e-279 964.9 568 80.6
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.5e-279 964.5 568 80.5
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 4.6e-279 964.1 568 80.5
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 4.6e-279 964.1 569 80.0
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 1.3e-278 962.6 568 79.4
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.3e-278 962.6 550 81.6
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.7e-278 962.2 568 80.5
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 3.0e-278 961.4 568 80.6
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 5.0e-278 960.7 550 82.0
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 5.0e-278 960.7 568 79.9
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 8.6e-278 959.9 566 80.7
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 1.9e-277 958.7 550 82.2
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 2.5e-277 958.4 550 81.6
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 7.3e-277 956.8 550 82.0
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 9.5e-277 956.4 568 79.0
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 1.6e-276 955.7 551 81.7
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 2.1e-276 955.3 550 81.5
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 2.8e-276 954.9 551 80.4
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 1.4e-275 952.6 550 80.9
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.4e-275 952.6 563 80.3
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 2.3e-275 951.8 564 80.1
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 3.1e-275 951.4 550 81.1
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 4.0e-275 951.0 566 79.5
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 5.2e-275 950.7 568 79.0
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 6.8e-275 950.3 550 81.1
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 8.9e-275 949.9 566 79.5
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 8.9e-275 949.9 550 81.1
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 1.5e-274 949.1 566 79.7
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 4.4e-274 947.6 564 80.1
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 5.8e-274 947.2 567 79.4
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 7.5e-274 946.8 571 79.0
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 7.5e-274 946.8 550 80.7
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 1.7e-273 945.7 567 79.4
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.7e-273 945.7 565 78.9
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 2.9e-273 944.9 553 81.2
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 6.4e-273 943.7 554 80.3
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 1.4e-272 942.6 573 78.7
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 5.4e-272 940.6 561 79.3
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 7.0e-272 940.3 553 80.1
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 9.2e-272 939.9 549 80.0
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 9.2e-272 939.9 561 78.3
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 9.2e-272 939.9 568 78.5
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 9.2e-272 939.9 553 79.7
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 1.2e-271 939.5 549 79.6
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 1.2e-271 939.5 557 79.5
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 2.0e-271 938.7 566 78.6
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 3.5e-271 937.9 549 80.0
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.6e-271 937.6 550 80.5
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 6.0e-271 937.2 580 77.2
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 7.8e-271 936.8 549 80.0
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 1.0e-270 936.4 553 79.7
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.3e-270 936.0 549 80.0
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 2.3e-270 935.3 565 78.8
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 3.9e-270 934.5 561 77.5
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 3.9e-270 934.5 549 79.8
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 5.0e-270 934.1 549 79.8
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 8.6e-270 933.3 549 79.6
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 2.5e-269 931.8 543 81.2
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 3.3e-269 931.4 548 80.1
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 3.3e-269 931.4 573 77.5
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 9.5e-269 929.9 553 79.2
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 1.6e-268 929.1 562 77.8
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 2.1e-268 928.7 570 77.9
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 2.8e-268 928.3 548 79.4
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 2.8e-268 928.3 562 77.9
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 6.2e-268 927.2 566 77.7
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 1.1e-267 926.4 551 78.8
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 3.1e-267 924.9 549 79.2
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 5.2e-267 924.1 549 79.1
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.5e-266 922.5 549 79.2
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 3.4e-266 921.4 571 77.4
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 3.4e-266 921.4 550 77.5
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 2.9e-265 918.3 549 78.3
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 4.1e-264 914.4 550 77.3
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 9.2e-264 913.3 550 77.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 5.1e-262 907.5 544 78.9
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 7.3e-261 903.7 557 77.0
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 7.3e-261 903.7 550 77.8
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.6e-260 902.5 542 78.0
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.6e-260 902.5 557 76.5
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 5.2e-259 897.5 517 82.6
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 6.8e-259 897.1 552 77.4
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 1.2e-258 896.3 548 77.0
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 2.4e-256 888.6 549 77.6
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 2.4e-256 888.6 518 81.5
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 1.7e-254 882.5 544 75.4
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 2.2e-249 865.5 562 74.7
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 2.2e-249 865.5 569 73.6
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.9e-249 864.4 551 75.3
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 6.0e-247 857.4 571 72.5
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 2.1e-244 849.0 549 74.1
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 6.9e-243 844.0 494 80.4
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.5e-242 842.8 540 73.9
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.6e-242 842.0 540 73.7
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.4e-242 841.6 544 72.4
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 5.8e-242 840.9 550 74.4
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 2.2e-241 839.0 557 73.8
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 6.4e-241 837.4 550 73.8
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 8.1e-236 820.5 548 70.4
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 2.8e-228 795.4 555 71.5
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.1e-227 793.5 506 76.1
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 6.9e-227 790.8 554 70.6
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.2e-223 780.0 455 82.0
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 3.0e-222 775.4 542 67.7
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 3.9e-222 775.0 555 67.4
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 9.6e-221 770.4 560 68.2
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 6.3e-220 767.7 536 67.5
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 9.7e-213 743.8 554 65.2
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 2.9e-209 732.3 536 65.9
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 8.5e-209 730.7 424 81.8
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 5.5e-208 728.0 423 81.8
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 9.7e-205 717.2 537 63.5
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.5e-200 701.4 538 65.4
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 5.5e-200 701.4 538 65.4
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 1.3e-188 663.7 609 57.6
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 1.9e-155 553.5 330 80.9
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.2e-154 550.8 552 55.1
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 1.0e-153 547.7 334 78.1
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 6.6e-145 518.5 546 49.6
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 2.5e-136 490.0 292 80.1
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.0e-129 466.5 309 74.1
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 8.7e-129 464.9 272 78.7
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 1.4e-123 447.6 349 66.2
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.9e-94 349.0 199 81.9
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.2e-87 327.4 501 42.1
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 4.5e-69 266.5 186 66.1
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 3.8e-68 263.5 338 43.8
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.6e-56 224.2 133 78.9
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 9.2e-54 215.7 137 75.9
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 2.3e-49 201.1 130 73.1
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 3.0e-49 200.7 129 72.1
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 5.8e-48 196.4 137 67.9
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 4.9e-47 193.4 124 71.8
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 4.9e-47 193.4 109 76.1
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 2.7e-45 187.6 127 69.3
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 2.7e-45 187.6 127 69.3
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 4.3e-43 180.3 120 68.3
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 4.3e-43 180.3 120 68.3
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.1e-42 177.9 119 72.3
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 1.5e-40 171.8 119 67.2
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 1.5e-40 171.8 119 67.2
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 4.4e-40 170.2 95 77.9
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 2.9e-31 141.0 76 81.6
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 3.3e-27 127.5 79 75.9
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 3.8e-23 114.0 118 48.3
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 3.2e-22 110.9 189 40.7
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 7.1e-22 109.8 86 64.0
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 6.0e-21 106.7 68 72.1
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 1.5e-16 92.0 60 68.3
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 2.4e-14 84.7 63 60.3


User provided reference genes

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