Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006590 Simmondsia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 3395.9 1786 100.0
Dinv11756 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2303.1 1805 70.4
Actinidia12415 Actinidia chinensis HOM05D003986 ORTHO05D004916 0.0e+00 2280.8 1790 69.8
EL10Ac6g14201 Beta vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2280.4 1771 71.7
Ah.02g127910 Amaranthus hybridus HOM05D003986 ORTHO05D004916 0.0e+00 2257.3 1771 71.3
Manes.17G086100 Manihot esculenta HOM05D003986 ORTHO05D004916 0.0e+00 2241.8 1800 68.8
Potri.013G085000 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2226.8 1792 68.1
GSVIVG01011619001 Vitis vinifera HOM05D003986 ORTHO05D004916 0.0e+00 2219.5 1745 69.1
CiPaw.06G055800 Carya illinoinensis HOM05D003986 ORTHO05D004916 0.0e+00 2217.2 1793 68.4
Glyma.05G241400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2212.6 1796 67.8
Eucgr.B02697 Eucalyptus grandis HOM05D003986 ORTHO05D004916 0.0e+00 2211.8 1774 68.2
AUR62038486 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2206.8 1749 69.1
Lj4g0022556 Lotus japonicus HOM05D003986 ORTHO05D004916 0.0e+00 2202.6 1791 67.6
Atru.chr11.800 Acer truncatum HOM05D003986 ORTHO05D004916 0.0e+00 2197.9 1796 67.8
Potri.019G054600 Populus trichocarpa HOM05D003986 ORTHO05D004916 0.0e+00 2192.9 1794 67.2
Sed0014719 Sechium edule HOM05D003986 ORTHO05D004916 0.0e+00 2190.2 1790 66.9
TWI74G0603 Tripterygium wilfordii HOM05D003986 ORTHO05D004916 0.0e+00 2184.8 1784 68.0
VMungo0251G0132 Vigna mungo HOM05D003986 ORTHO05D004916 0.0e+00 2184.1 1799 66.2
CsaV3_5G027880 Cucumis sativus L. HOM05D003986 ORTHO05D004916 0.0e+00 2182.5 1803 66.6
Phvul.002G324500 Phaseolus vulgaris HOM05D003986 ORTHO05D004916 0.0e+00 2179.8 1791 66.5
Prupe.3G150800 Prunus persica HOM05D003986 ORTHO05D004916 0.0e+00 2178.7 1781 67.3
Glyma.08G048400 Glycine max HOM05D003986 ORTHO05D004916 0.0e+00 2176.7 1791 66.8
MELO3C005265.2 Cucumis melo HOM05D003986 ORTHO05D004916 0.0e+00 2174.8 1799 66.3
Gohir.A03G112200 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 2168.7 1761 68.8
CANSAT78G0669 Cannabis sativa HOM05D003986 ORTHO05D004916 0.0e+00 2167.1 1783 67.1
MD09G1258800 Malus domestica HOM05D003986 ORTHO05D004916 0.0e+00 2158.6 1782 66.9
Gorai.005G152800 Gossypium raimondii HOM05D003986 ORTHO05D004916 0.0e+00 2158.3 1763 68.3
MSTRG.2114 Avicennia marina HOM05D003986 ORTHO05D004916 0.0e+00 2152.5 1770 66.7
Lalb_Chr05g0222051 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2148.6 1797 65.5
AUR62014146 Chenopodium quinoa HOM05D003986 ORTHO05D004916 0.0e+00 2138.2 1801 66.2
Nn4g24477 Nelumbo nucifera HOM05D003986 ORTHO05D004916 0.0e+00 2138.2 1804 65.8
Lalb_Chr16g0387401 Lupinus albus HOM05D003986 ORTHO05D004916 0.0e+00 2137.8 1795 65.3
Peaxi162Scf00937g00119 Petunia axillaris HOM05D003986 ORTHO05D004916 0.0e+00 2131.3 1784 65.9
Medtr8g106090 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2128.2 1793 66.6
PGR142G4089 Punica granatum HOM05D003986 ORTHO05D004916 0.0e+00 2126.7 1761 66.6
Sabra13G0078400 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2126.7 1853 64.5
TPR.G12867 Trifolium pratense HOM05D003986 ORTHO05D004916 0.0e+00 2124.4 1791 65.4
arahy.Tifrunner.gnm1.ann1.R76IPR Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2122.1 1804 65.2
Psat7g004480 Pisum sativum HOM05D003986 ORTHO05D004916 0.0e+00 2122.1 1791 64.9
QL03p038358 Quercus lobata HOM05D003986 ORTHO05D004916 0.0e+00 2120.9 1718 68.7
arahy.Tifrunner.gnm1.ann1.374THF Arachis hypogaea HOM05D003986 ORTHO05D004916 0.0e+00 2118.6 1820 65.2
Migut.E00504 Erythranthe guttata HOM05D003986 ORTHO05D004916 0.0e+00 2117.8 1746 67.6
Ca_17244_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 2105.5 1792 64.8
PSO782G5475 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2103.2 1784 65.9
Aqoxy3G04028 Aquilegia oxysepala HOM05D003986 ORTHO05D004916 0.0e+00 2097.8 1778 65.2
DCAR_026811 Daucus carota HOM05D003986 ORTHO05D004916 0.0e+00 2093.2 1820 64.1
ECA246G1343 Erigeron canadensis HOM05D003986 ORTHO05D004916 0.0e+00 2083.9 1729 66.3
TAR629G0821 Trochodendron aralioides HOM05D003986 ORTHO05D004916 0.0e+00 2083.1 1621 70.5
PSO063G2585 Papaver somniferum HOM05D003986 ORTHO05D004916 0.0e+00 2081.6 1770 65.8
CSS0009129 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 2074.7 1713 67.7
ClCG01G006690 Citrullus lanatus HOM05D003986 ORTHO05D004916 0.0e+00 2074.7 2012 59.2
Thecc.02G306600 Theobroma cacao HOM05D003986 ORTHO05D004916 0.0e+00 2073.9 1740 66.1
CAN.G206.116 Capsicum annuum HOM05D003986 ORTHO05D004916 0.0e+00 2073.5 1784 65.1
HanXRQChr12g0381871 Helianthus annuus HOM05D003986 ORTHO05D004916 0.0e+00 2067.4 1726 66.0
COL.COLO4_06656 Corchorus olitorius HOM05D003986 ORTHO05D004916 0.0e+00 2064.7 1827 64.6
Sopen05g014610 Solanum pennellii HOM05D003986 ORTHO05D004916 0.0e+00 2061.2 1779 65.5
Solyc05g017890.4 Solanum lycopersicum HOM05D003986 ORTHO05D004916 0.0e+00 2055.4 1779 65.5
THA.LOC104807876 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 2048.9 1745 65.1
Medtr7g117220 Medicago truncatula HOM05D003986 ORTHO05D004916 0.0e+00 2040.4 1794 64.5
ATR0021G052 Amborella trichopoda HOM05D003986 ORTHO05D004916 0.0e+00 2031.5 1779 64.5
FAN07G2168 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 2023.8 1765 64.1
Dinv14386 Davidia involucrata HOM05D003986 ORTHO05D004916 0.0e+00 2009.2 1788 64.0
Sabra19G0063600 Salix brachista HOM05D003986 ORTHO05D004916 0.0e+00 2008.0 2127 55.6
RcHm_v2.0_Chr4g0442311 Rosa chinensis HOM05D003986 ORTHO05D004916 0.0e+00 1981.5 1762 63.2
Haze_08333 Corylus avellana HOM05D003986 ORTHO05D004916 0.0e+00 1980.7 1990 58.8
AL1G40240 Arabidopsis lyrata HOM05D003986 ORTHO05D004916 0.0e+00 1979.9 1732 63.6
AT1G24706 Arabidopsis thaliana HOM05D003986 ORTHO05D004916 0.0e+00 1976.1 1731 63.5
FvH4_4g33200 Fragaria vesca HOM05D003986 ORTHO05D004916 0.0e+00 1962.2 1761 62.9
SGA_v2.0_scaffold3G01767 Striga asiatica HOM05D003986 ORTHO05D004916 0.0e+00 1961.8 1828 61.5
Sp1g23110 Schrenkiella parvula HOM05D003986 ORTHO05D004916 0.0e+00 1960.3 1734 63.6
unitig_8.g4016 Utricularia gibba HOM05D003986 ORTHO05D004916 0.0e+00 1959.5 1835 60.4
HPP92_004743 Vanilla planifolia HOM05D003986 ORTHO05D004916 0.0e+00 1958.7 1767 61.9
FAN22G0296 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1952.9 1759 62.7
FAN12G0920 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1950.3 1757 62.7
A08p26750 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1949.9 1731 63.0
Ca_29522_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 0.0e+00 1944.9 1770 61.7
FAN17G2354 Fragaria x ananassa HOM05D003986 ORTHO05D004916 0.0e+00 1936.0 1759 62.6
Aa31LG7G9380 Aethionema arabicum HOM05D003986 ORTHO05D004916 0.0e+00 1927.9 1750 62.3
BraA08t34620Z Brassica rapa HOM05D003986 ORTHO05D004916 0.0e+00 1922.9 1736 62.3
C03p73260 Brassica napus HOM05D003986 ORTHO05D004916 0.0e+00 1918.7 1733 62.4
Oeu006345.3 Olea europaea HOM05D003986 ORTHO05D004916 0.0e+00 1918.7 1828 61.8
BolC3t19622H Brassica oleracea HOM05D003986 ORTHO05D004916 0.0e+00 1912.5 1749 62.3
THA.LOC104825570 Tarenaya hassleriana HOM05D003986 ORTHO05D004916 0.0e+00 1911.3 1754 61.9
Carub.0001s2544 Capsella rubella HOM05D003986 ORTHO05D004916 0.0e+00 1911.0 1738 62.3
CARHR026420 Cardamine hirsuta HOM05D003986 ORTHO05D004916 0.0e+00 1904.4 1735 62.1
Lsat_1_v5_gn_3_102381 Lactuca sativa HOM05D003986 ORTHO05D004916 0.0e+00 1865.5 1276 75.5
CSS0026713 Camellia sinensis var. sinensis HOM05D003986 ORTHO05D004916 0.0e+00 1803.5 1516 67.1
Thhalv10006540m.g Eutrema salsugineum HOM05D003986 ORTHO05D004916 0.0e+00 1800.4 1733 60.2
Zm00001eb156750 Zea mays HOM05D003986 ORTHO05D004916 0.0e+00 1794.2 1734 59.0
Lj3C862T8 Lonicera japonica HOM05D003986 ORTHO05D004916 0.0e+00 1720.3 1479 65.1
Mapoly0001s0369 Marchantia polymorpha HOM05D003986 ORTHO05D004916 0.0e+00 1690.6 1892 54.4
AagrBONN_evm.TU.Sc2ySwM_117.1912 Anthoceros agrestis HOM05D003986 ORTHO05D004916 0.0e+00 1676.8 1871 53.6
Pp3c11_17570 Physcomitrium patens HOM05D003986 ORTHO05D004916 0.0e+00 1597.4 1715 54.6
Os01g0916800 Oryza sativa ssp. japonica HOM05D003986 ORTHO05D004916 0.0e+00 1568.5 1738 54.8
Hund24923 Selenicereus undatus HOM05D003986 ORTHO05D004916 0.0e+00 1487.6 1072 74.8
SMO145G0041 Selaginella moellendorffii HOM05D003986 ORTHO05D004916 0.0e+00 1477.6 1544 56.3
Gohir.D02G136832 Gossypium hirsutum HOM05D003986 ORTHO05D004916 0.0e+00 1307.4 856 78.3
Nitab4.5_0004735g0030 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1303.5 1245 60.0
Ciclev10014076m.g Citrus clementina HOM05D003986 ORTHO05D004916 0.0e+00 1291.9 1195 63.2
BcaB03g12045 Brassica carinata HOM05D003986 ORTHO05D004916 0.0e+00 1288.5 1472 53.3
Nitab4.5_0000011g0120 Nicotiana tabacum HOM05D003986 ORTHO05D004916 0.0e+00 1279.6 1271 59.0
SalBow2G1878 Salvia bowleyana HOM05D003986 ORTHO05D004916 0.0e+00 1193.3 1171 59.9
SHI04403 Sapria himalayana HOM05D003986 ORTHO05D004916 0.0e+00 1132.5 942 66.3
CDE05G3646 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 3.2e-310 1069.3 768 72.8
CBR_g39719 Chara braunii HOM05D003986 ORTHO05D004916 1.9e-286 990.3 1261 45.3
Cpa.g.sc2.153 Carica papaya HOM05D003986 ORTHO05D004916 6.7e-284 981.9 1067 58.1
CDE05G1820 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 9.7e-275 951.4 1108 53.0
CAN.G71.2 Capsicum annuum HOM05D003986 ORTHO05D004916 9.0e-273 944.9 689 73.1
Ciclev10017843m.g Citrus clementina HOM05D003986 ORTHO05D004916 1.7e-242 844.3 590 73.6
MCO13G375 Micromonas commoda HOM05D003986 ORTHO05D004916 1.9e-214 751.1 1228 38.4
CDE05G1425 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 2.5e-206 724.2 918 50.5
Gohir.D02G136766 Gossypium hirsutum HOM05D003986 ORTHO05D004916 1.7e-202 711.4 815 56.4
Cpa.g.sc2.149 Carica papaya HOM05D003986 ORTHO05D004916 6.0e-200 703.0 450 81.3
BcaC05g26698 Brassica carinata HOM05D003986 ORTHO05D004916 1.2e-197 695.3 891 47.9
PRCOL_00006124 Prasinoderma coloniale HOM05D003986 ORTHO05D004916 2.8e-157 561.2 1181 33.3
CDE05G1569 Ceratophyllum demersum HOM05D003986 ORTHO05D004916 1.4e-140 505.8 369 70.7
Lj3P862T26 Lonicera japonica HOM05D003986 ORTHO05D004916 4.2e-129 467.6 285 82.8
Nitab4.5_0000011g0130 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.8e-119 435.6 283 78.1
Nitab4.5_0004735g0040 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.4e-108 397.5 284 73.2
Rhsim04G0125900 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.4e-108 397.5 498 48.8
COL.COLO4_04150 Corchorus olitorius HOM05D003986 ORTHO05D004916 9.2e-92 343.6 291 63.9
AagrBONN_evm.TU.Sc2ySwM_368.2552 Anthoceros agrestis HOM05D003986 ORTHO05D004916 1.3e-90 339.7 231 71.9
Nitab4.5_0000011g0140 Nicotiana tabacum HOM05D003986 ORTHO05D004916 1.3e-85 323.2 238 71.0
Rhsim09G0087200 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.6e-82 310.8 198 77.8
Nitab4.5_0004735g0050 Nicotiana tabacum HOM05D003986 ORTHO05D004916 5.6e-81 307.8 261 64.4
Cre12.g507700 Chlamydomonas reinhardtii HOM05D003986 ORTHO05D004916 6.2e-80 304.3 1129 26.8
TAR371G1117 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.6e-78 298.9 536 41.4
Cfa024658 Carpinus fangiana HOM05D003986 ORTHO05D004916 1.1e-73 283.5 1782 24.6
BcaB03g12046 Brassica carinata HOM05D003986 ORTHO05D004916 2.0e-70 272.7 211 67.8
CAN.G71.1 Capsicum annuum HOM05D003986 ORTHO05D004916 1.8e-63 249.6 495 41.4
Lsat_1_v5_gn_3_86221 Lactuca sativa HOM05D003986 ORTHO05D004916 1.5e-57 229.9 226 59.3
Rhsim04G0143900 Rhododendron simsii HOM05D003986 ORTHO05D004916 3.8e-53 215.3 237 53.6
BcaB05g22549 Brassica carinata HOM05D003986 ORTHO05D004916 1.9e-52 213.0 245 52.7
TAR371G0322 Trochodendron aralioides HOM05D003986 ORTHO05D004916 2.3e-50 206.1 508 33.7
Rhsim04G0143600 Rhododendron simsii HOM05D003986 ORTHO05D004916 5.1e-50 204.9 273 48.7
BolC5t31277H Brassica oleracea HOM05D003986 ORTHO05D004916 1.1e-49 203.8 189 59.8
Hund24924 Selenicereus undatus HOM05D008000 ORTHO05D010275 1.5e-49 203.4 175 64.0
C05p25490 Brassica napus HOM05D003986 ORTHO05D004916 7.4e-49 201.1 192 58.9
Rhsim04G0143700 Rhododendron simsii HOM05D003986 ORTHO05D004916 6.3e-40 171.4 226 50.4
Actinidia23394 Actinidia chinensis HOM05D003986 ORTHO05D004916 4.5e-38 165.2 364 39.3
RcHm_v2.0_Chr2g0110801 Rosa chinensis HOM05D003986 ORTHO05D004916 1.9e-36 159.8 89 82.0
SHI04405 Sapria himalayana HOM05D003986 ORTHO05D004916 3.9e-34 152.1 106 69.8
Ca_30366_v3 Cicer arietinum L. HOM05D003986 ORTHO05D004916 5.9e-30 138.3 87 81.6
Sabra18G0054000 Salix brachista HOM05D003986 ORTHO05D004916 6.5e-29 134.8 108 70.4
Lalb_Chr18g0049821 Lupinus albus HOM05D003986 ORTHO05D004916 6.7e-26 124.8 75 82.7
MBI18_g21002_MAGBIO Magnolia biondii HOM05D003986 ORTHO05D004916 8.8e-26 124.4 105 65.7
Actinidia23393 Actinidia chinensis HOM05D003986 ORTHO05D004916 7.4e-25 121.3 107 63.6
Ciclev10015223m.g Citrus clementina HOM05D000271 ORTHO05D002152 2.2e-24 119.8 84 70.2
Lalb_Chr18g0050041 Lupinus albus HOM05D003986 ORTHO05D004916 1.4e-23 117.1 69 82.6
Cpa.g.sc2.147 Carica papaya HOM05D003986 ORTHO05D004916 3.5e-22 112.5 61 88.5
TAR629G2897 Trochodendron aralioides HOM05D003986 ORTHO05D004916 3.8e-21 109.0 87 64.4
BcaC05g26498 Brassica carinata HOM05D003986 ORTHO05D004916 1.4e-18 100.5 93 60.2
Sabra18G0053100 Salix brachista HOM05D003986 ORTHO05D004078 5.2e-18 98.6 73 72.6
Sabra18G0052900 Salix brachista HOM05D003986 ORTHO05D004916 2.6e-17 96.3 51 92.2
Sabra18G0053600 Salix brachista HOM05D003986 ORTHO05D004916 2.6e-17 96.3 51 92.2
Cpa.g.sc2.145 Carica papaya HOM05D003986 ORTHO05D004916 4.4e-17 95.5 128 46.1
SHI04410 Sapria himalayana HOM05D003986 ORTHO05D004916 4.4e-17 95.5 83 59.0
Sabra18G0053500 Salix brachista HOM05D003986 ORTHO05D004916 1.3e-16 94.0 51 90.2
Lalb_Chr05g0227571 Lupinus albus HOM05D003986 ORTHO05D004916 3.2e-12 79.3 41 87.8
COL.COLO4_22391 Corchorus olitorius HOM05D002579 ORTHO05D002775 4.2e-12 79.0 36 94.4
Psat0s3352g0200 Pisum sativum HOM05D003986 ORTHO05D020973 4.7e-11 75.5 53 77.4
Psat0s3352g0120 Pisum sativum HOM05D003435 ORTHO05D020973 1.0e-10 74.3 48 72.9
TPR.G39728 Trifolium pratense HOM05D003986 ORTHO05D004916 1.4e-10 73.9 68 57.4
VMungo0266G0001 Vigna mungo HOM05D000230 ORTHO05D000176 1.8e-10 73.6 77 61.0
VMungo0465G0002 Vigna mungo HOM05D003986 ORTHO05D004916 1.5e-09 70.5 81 48.1
COL.COLO4_04151 Corchorus olitorius HOM05D003986 ORTHO05D004916 2.6e-09 69.7 73 53.4
COL.COLO4_22474 Corchorus olitorius HOM05D002548 ORTHO05D003031 3.4e-09 69.3 111 37.8
TAR371G1101 Trochodendron aralioides HOM05D003986 ORTHO05D004916 1.3e-08 67.4 107 43.9
CsaV3_1G014700 Cucumis sativus L. HOM05D003986 ORTHO05D004916 3.7e-08 65.9 113 41.6
Sabra18G0053300 Salix brachista HOM05D003986 ORTHO05D004916 2.7e-06 59.7 52 59.6


User provided reference genes

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