Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sc14g0006480 Simmondsia chinensis HOM05D006362 ORTHO05D008295 0.0e+00 1102.8 571 100.0
GSVIVG01001989001 Vitis vinifera HOM05D006362 ORTHO05D008295 2.9e-257 891.7 574 79.1
Manes.15G074800 Manihot esculenta HOM05D006362 ORTHO05D008295 1.2e-250 869.8 576 78.1
TAR626G1624 Trochodendron aralioides HOM05D006362 ORTHO05D008295 2.6e-250 868.6 574 78.6
Thecc.07G046200 Theobroma cacao HOM05D006362 ORTHO05D008295 6.5e-249 864.0 577 76.4
Potri.011G135800 Populus trichocarpa HOM05D006362 ORTHO05D008295 1.9e-248 862.4 574 78.0
Gohir.A01G076501 Gossypium hirsutum HOM05D006362 ORTHO05D008295 2.1e-247 859.0 576 76.0
QL08p012554 Quercus lobata HOM05D006362 ORTHO05D008295 7.9e-247 857.1 572 77.3
Gorai.002G084800 Gossypium raimondii HOM05D006362 ORTHO05D008295 1.4e-246 856.3 576 76.2
AUR62020525 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.8e-246 855.9 556 79.0
Dinv40729 Davidia involucrata HOM05D006362 ORTHO05D008295 2.3e-246 855.5 574 76.7
Atru.chr2.3247 Acer truncatum HOM05D006362 ORTHO05D008295 3.0e-246 855.1 575 76.5
MD03G1209000 Malus domestica HOM05D006362 ORTHO05D008295 3.0e-246 855.1 569 77.9
CANSAT11G0353 Cannabis sativa HOM05D006362 ORTHO05D008295 3.9e-246 854.7 575 76.5
TWI38G1299 Tripterygium wilfordii HOM05D006362 ORTHO05D008295 5.1e-246 854.4 570 77.7
Duzib268G0905 Durio zibethinus HOM05D006362 ORTHO05D008295 1.5e-245 852.8 577 75.7
Ah.06g182950 Amaranthus hybridus HOM05D006362 ORTHO05D008295 3.3e-245 851.7 575 75.8
MELO3C018085.2 Cucumis melo HOM05D006362 ORTHO05D008295 4.3e-245 851.3 575 75.0
FAN12G0341 Fragaria x ananassa HOM05D006362 ORTHO05D008295 7.4e-245 850.5 579 77.4
Eucgr.F03442 Eucalyptus grandis HOM05D006362 ORTHO05D008295 1.3e-244 849.7 574 75.6
Prupe.4G206200 Prunus persica HOM05D006362 ORTHO05D008295 1.3e-244 849.7 558 78.5
Sed0025840 Sechium edule HOM05D006362 ORTHO05D008295 2.8e-244 848.6 575 74.4
Ciclev10007871m.g Citrus clementina HOM05D006362 ORTHO05D008295 3.7e-244 848.2 575 76.0
FvH4_4g07170 Fragaria vesca HOM05D006362 ORTHO05D008295 3.7e-244 848.2 579 77.2
RcHm_v2.0_Chr4g0399351 Rosa chinensis HOM05D006362 ORTHO05D008295 1.8e-243 845.9 578 77.0
Hma1.2p1_1344F.1_g277040 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.4e-243 845.5 580 75.7
CsaV3_1G044730 Cucumis sativus L. HOM05D006362 ORTHO05D008295 9.1e-243 843.6 575 74.8
Gohir.D01G064000 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.5e-242 842.8 576 75.3
THA.LOC104818092 Tarenaya hassleriana HOM05D006362 ORTHO05D008295 1.7e-241 839.3 577 74.5
Cfa020397 Carpinus fangiana HOM05D006362 ORTHO05D008295 1.1e-240 836.6 641 69.6
FAN22G0212 Fragaria x ananassa HOM05D006362 ORTHO05D008295 5.5e-240 834.3 588 75.3
Lalb_Chr03g0030071 Lupinus albus HOM05D006362 ORTHO05D008295 1.6e-239 832.8 576 74.3
Aqoxy1G03661 Aquilegia oxysepala HOM05D006362 ORTHO05D008295 4.7e-239 831.2 566 75.3
PSO832G4364 Papaver somniferum HOM05D006362 ORTHO05D008295 1.0e-238 830.1 573 74.9
Nn1g07069 Nelumbo nucifera HOM05D006362 ORTHO05D008295 3.0e-238 828.6 557 76.1
CARHR090140 Cardamine hirsuta HOM05D006362 ORTHO05D008295 4.4e-237 824.7 571 74.1
EL10Ac4g07932 Beta vulgaris HOM05D006362 ORTHO05D008295 2.2e-236 822.4 560 76.2
TPR.G25875 Trifolium pratense HOM05D006362 ORTHO05D008295 2.8e-236 822.0 576 72.4
AT3G15160 Arabidopsis thaliana HOM05D006362 ORTHO05D008295 3.7e-236 821.6 573 73.6
Glyma.06G271800 Glycine max HOM05D006362 ORTHO05D008295 3.7e-236 821.6 572 74.1
Sp3g13370 Schrenkiella parvula HOM05D006362 ORTHO05D008295 3.7e-236 821.6 573 74.2
AL3G27550 Arabidopsis lyrata HOM05D006362 ORTHO05D008295 2.4e-235 818.9 573 74.0
Psat7g162880 Pisum sativum HOM05D006362 ORTHO05D008295 2.4e-235 818.9 575 72.9
Thhalv10020417m.g Eutrema salsugineum HOM05D006362 ORTHO05D008295 5.3e-235 817.8 573 74.2
Carub.0003s1481 Capsella rubella HOM05D006362 ORTHO05D008295 7.0e-235 817.4 573 73.8
AUR62015672 Chenopodium quinoa HOM05D006362 ORTHO05D008295 1.5e-234 816.2 583 73.4
Oeu021406.2 Olea europaea HOM05D006362 ORTHO05D008295 1.5e-234 816.2 577 72.3
Lj3g0015245 Lotus japonicus HOM05D006362 ORTHO05D008295 2.6e-234 815.5 568 73.8
Medtr4g081050 Medicago truncatula HOM05D006362 ORTHO05D008295 2.6e-234 815.5 576 72.4
Solyc10g006410.3 Solanum lycopersicum HOM05D006362 ORTHO05D008295 3.5e-234 815.1 571 72.7
BolC3t17030H Brassica oleracea HOM05D006362 ORTHO05D008295 5.9e-234 814.3 572 73.4
Cc05_g13400 Coffea canephora HOM05D006362 ORTHO05D008295 5.9e-234 814.3 570 74.7
arahy.Tifrunner.gnm1.ann1.Z96I2W Arachis hypogaea HOM05D006362 ORTHO05D008295 1.0e-233 813.5 571 73.0
Aa31LG8G2360 Aethionema arabicum HOM05D006362 ORTHO05D008295 1.3e-233 813.1 573 72.8
Nitab4.5_0002342g0020 Nicotiana tabacum HOM05D006362 ORTHO05D008295 3.8e-233 811.6 573 73.1
C03p47540 Brassica napus HOM05D006362 ORTHO05D008295 8.5e-233 810.4 572 72.9
A03p39180 Brassica napus HOM05D006362 ORTHO05D008295 1.5e-232 809.7 572 72.9
Haze_09637 Corylus avellana HOM05D006362 ORTHO05D008295 1.5e-232 809.7 632 69.5
Sopen10g002360 Solanum pennellii HOM05D006362 ORTHO05D008295 1.5e-232 809.7 571 72.2
BraA03t13067Z Brassica rapa HOM05D006362 ORTHO05D008295 1.9e-232 809.3 572 72.7
ATR0697G203 Amborella trichopoda HOM05D006362 ORTHO05D008295 3.6e-231 805.1 569 72.8
CAN.G1781.12 Capsicum annuum HOM05D006362 ORTHO05D008295 6.1e-231 804.3 570 71.8
DCAR_022536 Daucus carota HOM05D006362 ORTHO05D008295 1.0e-230 803.5 593 70.7
HanXRQChr13g0407741 Helianthus annuus HOM05D006362 ORTHO05D008295 1.5e-229 799.7 565 72.0
ECA240G1610 Erigeron canadensis HOM05D006362 ORTHO05D008295 2.6e-229 798.9 568 72.7
Phvul.011G136800 Phaseolus vulgaris HOM05D006362 ORTHO05D008295 1.7e-228 796.2 576 72.2
Gorai.009G425700 Gossypium raimondii HOM05D006362 ORTHO05D008295 4.8e-228 794.7 577 72.1
PGR031G2573 Punica granatum HOM05D006362 ORTHO05D008295 6.3e-228 794.3 558 74.0
HPP92_009387 Vanilla planifolia HOM05D006362 ORTHO05D008295 2.6e-226 788.9 573 72.3
Ca_18860_v3 Cicer arietinum L. HOM05D006362 ORTHO05D008295 4.5e-226 788.1 559 71.7
arahy.Tifrunner.gnm1.ann1.GJJ2CM Arachis hypogaea HOM05D006362 ORTHO05D008295 2.9e-225 785.4 567 71.4
BcaC01g03890 Brassica carinata HOM05D006362 ORTHO05D008295 4.2e-224 781.6 594 68.7
Rhsim06G0213400 Rhododendron simsii HOM05D006362 ORTHO05D008295 3.7e-220 768.5 621 67.3
Peaxi162Scf00387g00613 Petunia axillaris HOM05D006362 ORTHO05D008295 8.3e-220 767.3 564 69.9
COL.COLO4_09973 Corchorus olitorius HOM05D004186 ORTHO05D006965 3.1e-219 765.4 574 70.4
Gohir.A04G020300 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.3e-217 760.0 575 70.1
ClCG05G014560 Citrullus lanatus HOM05D006362 ORTHO05D008295 1.1e-216 756.9 593 68.1
SGA_v2.0_scaffold80G25930 Striga asiatica HOM05D006362 ORTHO05D008295 1.2e-215 753.4 575 67.7
Lj1C868T5 Lonicera japonica HOM05D006362 ORTHO05D008295 3.0e-214 748.8 545 73.2
Hund23291 Selenicereus undatus HOM05D006362 ORTHO05D008295 6.8e-214 747.7 510 76.7
Os04g0626900 Oryza sativa ssp. japonica HOM05D006362 ORTHO05D008295 2.0e-213 746.1 568 68.3
CDE05G0917 Ceratophyllum demersum HOM05D006362 ORTHO05D008295 2.8e-212 742.3 557 69.5
FAN17G1244 Fragaria x ananassa HOM05D006362 ORTHO05D008295 2.3e-209 732.6 587 69.2
Sabra11G0122000 Salix brachista HOM05D006362 ORTHO05D008295 5.5e-208 728.0 611 66.3
Migut.M01793 Erythranthe guttata HOM05D006362 ORTHO05D008295 1.2e-207 726.9 572 65.9
Nitab4.5_0002229g0190 Nicotiana tabacum HOM05D006362 ORTHO05D008295 5.7e-205 718.0 594 65.7
Lsat_1_v5_gn_5_81640 Lactuca sativa HOM05D006362 ORTHO05D008295 2.8e-204 715.7 557 67.3
CiPaw.11G185900 Carya illinoinensis HOM05D006362 ORTHO05D008295 7.8e-194 681.0 430 81.4
Gohir.D05G366200 Gossypium hirsutum HOM05D006362 ORTHO05D008295 9.9e-173 610.9 430 73.5
vmacro11753 Vaccinium macrocarpon HOM05D006362 ORTHO05D008295 1.1e-171 607.4 697 50.5
Mapoly0021s0009 Marchantia polymorpha HOM05D006362 ORTHO05D008295 5.1e-169 598.6 575 56.0
Pp3c24_12510 Physcomitrium patens HOM05D006362 ORTHO05D008295 3.4e-165 585.9 569 54.8
SMO115G0345 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 7.6e-157 558.1 569 55.2
AagrBONN_evm.TU.Sc2ySwM_117.2426 Anthoceros agrestis HOM05D006362 ORTHO05D008295 2.3e-145 520.0 572 49.7
Pp3c23_6050 Physcomitrium patens HOM05D006362 ORTHO05D008295 1.0e-140 504.6 561 52.0
BolC3t17019H Brassica oleracea HOM05D006362 ORTHO05D008295 1.5e-125 454.1 321 73.5
PGSC0003DMG403014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 5.3e-110 402.5 281 72.6
HPP92_009392 Vanilla planifolia HOM05D006362 ORTHO05D008295 1.6e-109 401.0 275 74.2
Zm00001eb070060 Zea mays HOM05D006362 ORTHO05D008295 3.6e-98 363.2 283 65.0
CSS0013960 Camellia sinensis var. sinensis HOM05D006362 ORTHO05D008295 3.4e-96 356.7 221 81.9
PGSC0003DMG402014396 Solanum tuberosum HOM05D006362 ORTHO05D008295 8.3e-71 272.3 195 69.2
Rhsim12G0205700 Rhododendron simsii HOM05D006362 ORTHO05D008295 3.3e-51 207.2 298 47.0
CBR_g57499 Chara braunii HOM05D006362 ORTHO05D008295 4.3e-51 206.8 240 45.0
SEGI_18975 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 1.8e-49 201.4 174 63.2
Cpa.g.sc131.92 Carica papaya HOM05D006362 ORTHO05D008295 1.3e-42 178.7 116 79.3
Gorai.002G084600 Gossypium raimondii HOM05D006362 ORTHO05D008295 4.8e-42 176.8 120 72.5
Gohir.D01G063866 Gossypium hirsutum HOM05D006362 ORTHO05D008295 1.7e-39 168.3 120 70.0
SHI31860 Sapria himalayana HOM05D006362 ORTHO05D008295 3.8e-39 167.2 147 58.5
SEGI_13710 Sequoiadendron giganteum HOM05D006362 ORTHO05D008295 6.7e-36 156.4 132 61.4
VMungo0251G2436 Vigna mungo HOM05D006362 ORTHO05D008295 6.2e-34 149.8 115 67.0
Hma1.2p1_1609F.1_g293480 Hydrangea macrophylla HOM05D006362 ORTHO05D008295 2.5e-27 127.9 136 56.6
SMO347G0562 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 3.6e-21 107.5 186 38.2
CBR_g57501 Chara braunii HOM05D006362 ORTHO05D008295 1.3e-20 105.5 121 47.1
SMO228G0126 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.8e-20 105.1 193 35.8
HPP92_009393 Vanilla planifolia HOM05D006362 ORTHO05D008295 3.0e-20 104.4 96 58.3
HanXRQChr16g0507081 Helianthus annuus HOM05D006362 ORTHO05D008295 4.8e-18 97.1 82 61.0
SMO111G0176 Selaginella moellendorffii HOM05D013632 ORTHO05D008295 8.5e-15 86.3 96 46.9
SMO167G0061 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.6e-13 82.0 148 37.8
Cc02_g13940 Coffea canephora HOM05D006362 ORTHO05D008295 7.9e-13 79.7 55 78.2
BcaB04g20946 Brassica carinata HOM05D006362 ORTHO05D008295 1.7e-10 72.0 45 71.1
SMO122G0015 Selaginella moellendorffii HOM05D006362 ORTHO05D374567 2.2e-10 71.6 128 33.6
SMO009G0006 Selaginella moellendorffii HOM05D013632 ORTHO05D379378 1.2e-08 65.9 142 33.8
SMO118G0508 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 1.5e-08 65.5 209 27.8
SMO014G0021 Selaginella moellendorffii HOM05D006362 ORTHO05D008295 2.2e-07 61.6 177 30.5
Lsat_1_v5_gn_3_32440 Lactuca sativa HOM05D006362 ORTHO05D228842 1.9e-06 58.5 51 62.7
Cpa.g.sc131.91 Carica papaya HOM05D006362 ORTHO05D116658 4.2e-06 57.4 37 73.0


User provided reference genes

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